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<datestamp>2018-01-11</datestamp>
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<publisher>HAL CCSD</publisher>
<title lang=en>Aozan: an automated post-sequencing data-processing pipeline</title>
<creator>Perrin, Sandrine</creator>
<creator>Firmo, Cyril</creator>
<creator>Lemoine, Sophie</creator>
<creator>Le Crom, Stephane</creator>
<creator>Jourdren, Laurent</creator>
<contributor>Analyse des Données à Haut Débit en Génomique (ADHDG) ; Systématique, adaptation, évolution (SAE) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Evolution Paris Seine ; Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Centre National de la Recherche Scientifique (CNRS) - Université des Antilles et de la Guyane (UAG) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Université des Antilles et de la Guyane (UAG)</contributor>
<description>International audience</description>
<source>Bioinformatics</source>
<identifier>hal-01545317</identifier>
<identifier>https://hal.archives-ouvertes.fr/hal-01545317</identifier>
<source>https://hal.archives-ouvertes.fr/hal-01545317</source>
<source>Bioinformatics, 2017, pp.2212-2213. 〈10.1093/bioinformatics/btx154〉</source>
<identifier>DOI : 10.1093/bioinformatics/btx154</identifier>
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<language>en</language>
<subject>[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]</subject>
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<type>Journal articles</type>
<description lang=en>Motivation: Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports. Availability and Implementation: Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http://www.outils.genomique.biologie.ens.fr/aozan/. Aozan source code is available on GitHub: https://github.com/GenomicParisCentre/aozan.</description>
<date>2017-03</date>
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