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<publisher>HAL CCSD</publisher>
<title lang=en>Patterns of Rare and Abundant Marine Microbial Eukaryotes</title>
<creator>Logares, Ramiro</creator>
<creator>Audic, Stéphane</creator>
<creator>Bass, David</creator>
<creator>Bittner, Lucie</creator>
<creator>Boutte, Christophe</creator>
<creator>Christen, Richard</creator>
<creator>Claverie, Jean-Michel</creator>
<creator>Decelle, Johan</creator>
<creator>Dolan, John R</creator>
<creator>Dunthorn, Micah</creator>
<creator>Edvardsen, Bente</creator>
<creator>Gobet, Angélique</creator>
<creator>Kooistra, Wiebe H.C.F.</creator>
<creator>Mahé, Frédéric</creator>
<creator>Not, Fabrice</creator>
<creator>Ogata, Hiroyuki</creator>
<creator>Pawlowski, Jan</creator>
<creator>Pernice, Massimo C</creator>
<creator>Romac, Sarah</creator>
<creator>Shalchian-Tabrizi, Kamran</creator>
<creator>Simon, Nathalie</creator>
<creator>Stoeck, Thorsten</creator>
<creator>Santini, Sébastien</creator>
<creator>Siano, Raffaele</creator>
<creator>Wincker, Patrick</creator>
<creator>Zingone, Adriana</creator>
<creator>Richards, Thomas A</creator>
<creator>, </creator>
<creator>Massana, Ramon</creator>
<contributor>Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM) ; Consejo Superior de Investigaciones Científicas [Spain] (CSIC)</contributor>
<contributor>Evolution des Protistes et Ecosystèmes Pélagiques (EPEP) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Department of life sciences ; The Natural History Museum [London]</contributor>
<contributor>Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Department of ecology ; Universität Kaiserslautern</contributor>
<contributor>Evolution Paris Seine ; Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Centre National de la Recherche Scientifique (CNRS) - Université des Antilles et de la Guyane (UAG) - Université Pierre et Marie Curie - Paris 6 (UPMC)</contributor>
<contributor>Information génomique et structurale (IGS) ; Aix Marseille Université (AMU) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Laboratoire d'océanographie de Villefranche (LOV) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Institut national des sciences de l'Univers (INSU - CNRS) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Department of biosciences ; University of Oslo (UiO)</contributor>
<contributor>Laboratory of Ecology and Evolution of Plankton ; Stazione Zoologica A. Dorhn</contributor>
<contributor>Diversité et Interactions au sein du Plancton Océanique (DIPO) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Education academy of computational life sciences ; Tokyo Institute of Technology [Tokyo] (TITECH)</contributor>
<contributor>Department of genetics and evolution ; University of Geneva [Switzerland]</contributor>
<contributor>Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)</contributor>
<contributor>Génomique métabolique (UMR 8030) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA) - Université d'Évry-Val-d'Essonne (UEVE) - Université Paris-Saclay - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Biosciences, Geoffrey Pope Builing ; University of Exeter</contributor>
<description>International audience</description>
<source>ISSN: 0960-9822</source>
<source>EISSN: 1879-0445</source>
<source>Current Biology - CB</source>
<publisher>Elsevier</publisher>
<identifier>hal-01149637</identifier>
<identifier>http://hal.upmc.fr/hal-01149637</identifier>
<identifier>http://hal.upmc.fr/hal-01149637/document</identifier>
<identifier>http://hal.upmc.fr/hal-01149637/file/Logares_et_al_CurrentBiol_accepted.pdf</identifier>
<source>http://hal.upmc.fr/hal-01149637</source>
<source>Current Biology - CB, Elsevier, 2014, 24 (8), pp.813-821. 〈10.1016/j.cub.2014.02.050〉</source>
<identifier>DOI : 10.1016/j.cub.2014.02.050</identifier>
<relation>info:eu-repo/semantics/altIdentifier/doi/10.1016/j.cub.2014.02.050</relation>
<identifier>PUBMED : 24704080</identifier>
<relation>info:eu-repo/semantics/altIdentifier/pmid/24704080</relation>
<language>en</language>
<subject lang=en>next-generation sequencing</subject>
<subject lang=en>abundance distribution</subject>
<subject lang=en>microbial eukaryotes</subject>
<subject lang=en>community ecology</subject>
<subject lang=en>marine</subject>
<subject>[SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology</subject>
<subject>[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]</subject>
<subject>[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy</subject>
<type>info:eu-repo/semantics/article</type>
<type>Journal articles</type>
<description lang=en>Background : Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.Results : Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.Conclusions : We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time.</description>
<date>2014-04-14</date>
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