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<title lang=en>Benthic protists: the under-charted majority</title>
<creator>Forster, Dominik</creator>
<creator>Dunthorn, Micah</creator>
<creator>Mahé, Fréderic</creator>
<creator>Dolan, John R.</creator>
<creator>Audic, Stéphane</creator>
<creator>Bass, David</creator>
<creator>Bittner, Lucie</creator>
<creator>Boutte, Christophe</creator>
<creator>Christen, Richard</creator>
<creator>Claverie, Jean-Michel</creator>
<creator>Decelle, Johan</creator>
<creator>Edvardsen, Bente</creator>
<creator>Egge, Elianne</creator>
<creator>Eikrem, Wenche</creator>
<creator>Gobet, Angélique</creator>
<creator>Kooistra, Wiebe H.C.F.</creator>
<creator>Logares, Ramiro</creator>
<creator>Massana, Ramon</creator>
<creator>Montresor, Marina</creator>
<creator>Not, Fabrice</creator>
<creator>Ogata, Hiroyuki</creator>
<creator>Pawlowski, Jan</creator>
<creator>Pernice, Massimo C.</creator>
<creator>Romac, Sarah</creator>
<creator>Shalchian-Tabrizi, Kamran</creator>
<creator>Simon, Nathalie</creator>
<creator>Richards, Thomas A.</creator>
<creator>Santini, Sébastien</creator>
<creator>Sarno, Diana</creator>
<creator>Siano, Raffaele</creator>
<creator>Vaulot, Daniel</creator>
<creator>Wincker, Patrick</creator>
<creator>Zingone, Adriana</creator>
<creator>de Vargas, Colomban</creator>
<creator>Stoeck, Thorsten</creator>
<contributor>University of Kaiserslautern [Kaiserslautern]</contributor>
<contributor>Laboratoire d'océanographie de Villefranche (LOV) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Institut national des sciences de l'Univers (INSU - CNRS) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Evolution des Protistes et Ecosystèmes Pélagiques (EPEP) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>The Natural History Museum [London]</contributor>
<contributor>Centre for Environment, Fisheries and Aquaculture Science [Weymouth] (Cefas)</contributor>
<contributor>Analyse des Données à Haut Débit en Génomique (ADHDG) ; Systématique, adaptation, évolution (SAE) ; Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Evolution Paris Seine ; Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Centre National de la Recherche Scientifique (CNRS) - Université des Antilles et de la Guyane (UAG) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Université des Antilles et de la Guyane (UAG)</contributor>
<contributor>Symbiose Marine (SM) ; Systématique, adaptation, évolution (SAE) ; Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Evolution Paris Seine ; Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Centre National de la Recherche Scientifique (CNRS) - Université des Antilles et de la Guyane (UAG) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Université des Antilles et de la Guyane (UAG)</contributor>
<contributor>Information génomique et structurale (IGS) ; Aix Marseille Université (AMU) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>University of Oslo (UiO)</contributor>
<contributor>Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Stazione Zoologica Anton Dohrn ; Stazione Zoologica Anton Dohrn</contributor>
<contributor>Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM) ; Consejo Superior de Investigaciones Científicas [Spain] (CSIC)</contributor>
<contributor>Diversité et Interactions au sein du Plancton Océanique (DIPO) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Kyoto University [Kyoto]</contributor>
<contributor>Department of Genetics and Evolution [Genève] ; University of Geneva [Switzerland]</contributor>
<contributor>University of Exeter</contributor>
<contributor>IFREMER - Centre de Brest ; Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)</contributor>
<contributor>Genoscope - Centre national de séquençage [Evry] (GENOSCOPE) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)</contributor>
<description>International audience</description>
<source>ISSN: 0168-6496</source>
<source>EISSN: 1574-6941</source>
<source>FEMS Microbiology Ecology</source>
<publisher>Wiley-Blackwell</publisher>
<identifier>hal-01383722</identifier>
<identifier>http://hal.upmc.fr/hal-01383722</identifier>
<identifier>http://hal.upmc.fr/hal-01383722/document</identifier>
<identifier>http://hal.upmc.fr/hal-01383722/file/Forster_2016_Benthic_protists.pdf</identifier>
<source>http://hal.upmc.fr/hal-01383722</source>
<source>FEMS Microbiology Ecology, Wiley-Blackwell, 2016, 92 (8), pp.fiw120. 〈10.1093/femsec/fiw120〉</source>
<identifier>DOI : 10.1093/femsec/fiw120</identifier>
<relation>info:eu-repo/semantics/altIdentifier/doi/10.1093/femsec/fiw120</relation>
<language>en</language>
<subject>[SDV.MP.PRO] Life Sciences [q-bio]/Microbiology and Parasitology/Protistology</subject>
<subject>[SDV.BID] Life Sciences [q-bio]/Biodiversity</subject>
<subject>[SDE.BE] Environmental Sciences/Biodiversity and Ecology</subject>
<type>info:eu-repo/semantics/article</type>
<type>Journal articles</type>
<description lang=en>Marine protist diversity inventories have largely focused on planktonic environments, while benthic protists have received relatively little attention. We therefore hypothesize that current diversity surveys have only skimmed the surface of protist diversity in marine sediments, which may harbor greater diversity than planktonic environments. We tested this by analyzing sequences of the hypervariable V4 18S rRNA from benthic and planktonic protist communities sampled in European coastal regions. Despite a similar number of OTUs in both realms, richness estimations indicated that we recovered at least 70% of the diversity in planktonic protist communities, but only 33% in benthic communities. There was also little overlap of OTUs between planktonic and benthic communities, as well as between separate benthic communities. We argue that these patterns reflect the heterogeneity and diversity of benthic habitats. A comparison of all OTUs against the Protist Ribosomal Reference database showed that a higher proportion of benthic than planktonic protist diversity is missing from public databases; similar results were obtained by comparing all OTUs against environmental references from NCBI's Short Read Archive. We suggest that the benthic realm may therefore be the world's largest reservoir of marine protist diversity, with most taxa at present undescribed.</description>
<date>2016</date>
</dc>
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