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<title lang=en>The BioMart community portal: an innovative alternative to large, centralized data repositories</title>
<creator>Smedley, Damian</creator>
<creator>Haider, Syed</creator>
<creator>Durinck, Steffen</creator>
<creator>Pandini, Luca</creator>
<creator>Provero, Paolo</creator>
<creator>Allen, James</creator>
<creator>Arnaiz, Olivier</creator>
<creator>Awedh, Mohammad Hamza</creator>
<creator>Baldock, Richard</creator>
<creator>Barbiera, Giulia</creator>
<creator>Bardou, Philippe</creator>
<creator>Beck, Tim</creator>
<creator>Blake, Andrew</creator>
<creator>Bonierbale, Merideth</creator>
<creator>Brookes, Anthony J.</creator>
<creator>Bucci, Gabriele</creator>
<creator>Buetti, Iwan</creator>
<creator>Burge, Sarah</creator>
<creator>Cabau, Cédric</creator>
<creator>Carlson, Joseph W.</creator>
<creator>Chelala, Claude</creator>
<creator>Chrysostomou, Charalambos</creator>
<creator>Cittaro, Davide</creator>
<creator>Collin, Olivier</creator>
<creator>Cordova, Raul</creator>
<creator>Cutts, Rosalind J.</creator>
<creator>Dassi, Erik</creator>
<creator>Genova, Alex Di</creator>
<creator>Djari, Anis</creator>
<creator>Esposito, Anthony</creator>
<creator>Estrella, Heather</creator>
<creator>Eyras, Eduardo</creator>
<creator>Fernandez-Banet, Julio</creator>
<creator>Forbes, Simon</creator>
<creator>Free, Robert C.</creator>
<creator>Fujisawa, Takatomo</creator>
<creator>Gadaleta, Emanuela</creator>
<creator>Garcia-Manteiga, Jose M.</creator>
<creator>Goodstein, David</creator>
<creator>Gray, Kristian</creator>
<creator>Guerra-Assunção, José Afonso</creator>
<creator>Haggarty, Bernard</creator>
<creator>Han, Dong-Jin</creator>
<creator>Han, Byung Woo</creator>
<creator>Harris, Todd</creator>
<creator>Harshbarger, Jayson</creator>
<creator>Hastings, Robert K.</creator>
<creator>Hayes, Richard D.</creator>
<creator>Hoede, Claire</creator>
<creator>Hu, Shen</creator>
<creator>Hu, Zhi-Liang</creator>
<creator>Hutchins, Lucie</creator>
<creator>Kan, Zhengyan</creator>
<creator>Kawaji, Hideya</creator>
<creator>Keliet, Aminah</creator>
<creator>Kerhornou, Arnaud</creator>
<creator>Kim, Sunghoon</creator>
<creator>Kinsella, Rhoda</creator>
<creator>Klopp, Christophe</creator>
<creator>Kong, Lei</creator>
<creator>Lawson, Daniel</creator>
<creator>Lazarevic, Dejan</creator>
<creator>Lee, Ji-Hyun</creator>
<creator>Letellier, Thomas</creator>
<creator>Li, Chuan-Yun</creator>
<creator>Lió, Pietro</creator>
<creator>Liu, Chu-Jun</creator>
<creator>Luo, Jie</creator>
<creator>Maass, Alejandro</creator>
<creator>Mariette, Jérôme</creator>
<creator>Maurel, Thomas</creator>
<creator>Merella, Stefania</creator>
<creator>Mohamed, Azza Mostafa</creator>
<creator>Moreews, Francois</creator>
<creator>Nabihoudine, Ibounyamine</creator>
<creator>Ndegwa, Nelson</creator>
<creator>Noirot, Celine</creator>
<creator>Perez-Llamas, Cristian</creator>
<creator>Quattrone, Alessandro</creator>
<creator>Primig, Michael</creator>
<creator>Rambaldi, Davide</creator>
<creator>Sallou, Olivier</creator>
<creator>Reecy, James</creator>
<creator>Riba, Michela</creator>
<creator>Rosanoff, Steven</creator>
<creator>Saddiq, Amna Ali</creator>
<creator>Salas, Elisa</creator>
<creator>Quesneville, Hadi</creator>
<creator>Shepherd, Rebecca</creator>
<creator>Simon, Reinhard</creator>
<creator>Sperling, Linda</creator>
<creator>Spooner, William</creator>
<creator>Staines, Daniel M.</creator>
<creator>Steinbach, Delphine</creator>
<creator>Stone, Kevin</creator>
<creator>Stupka, Elia</creator>
<creator>Teague, Jon W.</creator>
<creator>Dayem Ullah, Abu Z.</creator>
<creator>Wang, Jun</creator>
<creator>Ware, Doreen</creator>
<creator>Wong-Erasmus, Marie</creator>
<creator>Youens-Clark, Ken</creator>
<creator>Zadissa, Amonida</creator>
<creator>Zhang, Shi-Jian</creator>
<creator>Kasprzyk, Arek</creator>
<contributor>European Bioinformatics Institute [Hinxton] (EMBL-EBI) ; European Molecular Biology Laboratory [Hinxton]</contributor>
<contributor>Computer Laboratory [Cambridge] ; University of Cambridge [UK] (CAM)</contributor>
<contributor>Genentech, Inc. ; Genentech, Inc. [San Francisco]</contributor>
<contributor>San Raffaele Scientific Institute ; Vita-Salute San Raffaele University and Center for Translational Genomics and Bioinformatics</contributor>
<contributor>Genetics, Biology and Biochemistry, Molecular Biotechnology Centre ; Genetics, Biology and Biochemistry, Molecular Biotechnology Centre</contributor>
<contributor>Centre de génétique moléculaire (CGM) ; Université Paris-Sud - Paris 11 (UP11) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>King Abdulaziz University</contributor>
<contributor>MRC Human Genetics Unit ; University of Edinburgh - Western General Hospital</contributor>
<contributor>Laboratoire de Génétique Cellulaire (LGC) ; Institut National de la Recherche Agronomique (INRA) - Ecole Nationale Vétérinaire de Toulouse</contributor>
<contributor>Department of Genetics [Leicester] ; University of Leicester</contributor>
<contributor>Medical Research Council Harwell (Mammalian Genetics Unit and Mary Lyon Centre) ; Medical Research Counc</contributor>
<contributor>International Potato Center ; International Potato Center</contributor>
<contributor>Department of Energy / Joint Genome Institute (DOE) ; Los Alamos National Laboratory (LANL)</contributor>
<contributor>Centre for Molecular Oncology and Imaging ; Centre for Molecular Oncology and Imaging, Barts Cancer Institute</contributor>
<contributor>Plateforme bioinformatique GenOuest [Rennes] ; Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA) ; CentraleSupélec - Université de Rennes 1 (UR1) - Télécom Bretagne - Institut National des Sciences Appliquées (INSA) - Institut National de Recherche en Informatique et en Automatique (Inria) - École normale supérieure - Rennes (ENS Rennes) - Centre National de la Recherche Scientifique (CNRS) - Université de Bretagne Sud (UBS) - CentraleSupélec - Université de Rennes 1 (UR1) - Télécom Bretagne - Institut National des Sciences Appliquées (INSA) - Institut National de Recherche en Informatique et en Automatique (Inria) - École normale supérieure - Rennes (ENS Rennes) - Centre National de la Recherche Scientifique (CNRS) - Université de Bretagne Sud (UBS) - Plateforme Génomique Santé Biogenouest® - Inria Rennes – Bretagne Atlantique ; Institut National de Recherche en Informatique et en Automatique (Inria)</contributor>
<contributor>University of Trento [Trento]</contributor>
<contributor>University of Chile [Santiago]</contributor>
<contributor>Unité de Biométrie et Intelligence Artificielle (UBIA) ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Pfizer Oncology ; Pfizer Oncology</contributor>
<contributor>Institució Catalana de Recerca i Estudis Avançats [Barcelona] (ICREA) ; Universitat de Barcelona (UB) - Fundació Catalana per a la Recerca i la Innovació (FCRI) - ICREA</contributor>
<contributor>Cancer Genome Project ; Wellcome Trust Sanger Institute</contributor>
<contributor>Kasuza DNA Research Institute ; Kasuza DNA Research Institute</contributor>
<contributor>Seoul National University [Seoul]</contributor>
<contributor>Cold Spring Harbor Laboratory (CSHL) ; Cold Spring Harbor Laboratory</contributor>
<contributor>RIKEN</contributor>
<contributor>School of Dentistry and Dental Research Institute [UCLA] ; University of California at Los Angeles [Los Angeles] (UCLA)</contributor>
<contributor>Department of Animal Science and Center for Integrated Animal Genomics ; Iowa State University (ISU)</contributor>
<contributor>Mouse Genomic Informatics Group (MGI) ; The Jackson Laboratory</contributor>
<contributor>Unité de Recherche Génomique Info (URGI) ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Center for Bioinformatics [Pekin] ; Peking University [Beijing]</contributor>
<contributor>Division of Industrial Ecology (KTH) ; Royal Institute of Technology [Stockholm] (KTH )</contributor>
<contributor>Institute of Molecular Medicine</contributor>
<contributor>Universidad de Santiago de Chile [Santiago] (USACH)</contributor>
<contributor>Centro de Regulación Génica (CRG) ; Universidad de Santiago de Chile [Santiago] (USACH) - Pontificia Universidad Católica de Chile - Universidad Andrés Bello</contributor>
<contributor>Centre de Modélisation Mathématique / Centro de Modelamiento Matemático (CMM) ; Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Unité Mathématiques et Informatique Appliquées de Toulouse (MIAT) ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Elevage [Rennes] (PEGASE) ; Institut National de la Recherche Agronomique (INRA) - AGROCAMPUS OUEST</contributor>
<contributor>Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRA) ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Mathématiques et Informatique Appliquées Toulouse ; Institut National de Recherche Agronomique</contributor>
<contributor>Universitat Pompeu Fabra [Barcelona]</contributor>
<contributor>Institut de recherche, santé, environnement et travail [Rennes] (Irset) ; Université d'Angers (UA) - Université des Antilles et de la Guyane (UAG) - Université de Rennes 1 (UR1) - École des Hautes Études en Santé Publique [EHESP] (EHESP) - Institut National de la Santé et de la Recherche Médicale (INSERM) - Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )</contributor>
<contributor>Department of Animal Science ; Iowa State University (ISU)</contributor>
<contributor>Eagle Genomics Ltd ; Eagle Genomics</contributor>
<contributor>State Key Laboratory of Lithospheric Evolution ; Institute of Geology and Geophysics, Chinese Academy of Sciences</contributor>
<contributor>University of the Chinese Academy of Sciences ; University of the Chinese Academy of Sciences</contributor>
<contributor>Ontario Institute for Cancer Research [Canada] (OICR) ; Ontario Institute for Cancer Research</contributor>
<description>International audience</description>
<source>ISSN: 0305-1048</source>
<source>EISSN: 1362-4962</source>
<source>Nucleic Acids Research</source>
<publisher>Oxford University Press</publisher>
<identifier>hal-01146849</identifier>
<identifier>https://hal-univ-rennes1.archives-ouvertes.fr/hal-01146849</identifier>
<source>https://hal-univ-rennes1.archives-ouvertes.fr/hal-01146849</source>
<source>Nucleic Acids Research, Oxford University Press, 2015, 43, pp.W589-W598. 〈10.1093/nar/gkv350〉</source>
<identifier>DOI : 10.1093/nar/gkv350</identifier>
<relation>info:eu-repo/semantics/altIdentifier/doi/10.1093/nar/gkv350</relation>
<identifier>PUBMED : 25897122</identifier>
<relation>info:eu-repo/semantics/altIdentifier/pmid/25897122</relation>
<language>en</language>
<subject>[SDV] Life Sciences [q-bio]</subject>
<type>info:eu-repo/semantics/article</type>
<type>Journal articles</type>
<description lang=en>The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.</description>
<date>2015</date>
</dc>
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