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<datestamp>2018-01-11</datestamp>
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<title lang=en>Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks</title>
<creator>Derory, Jérémy</creator>
<creator>SCOTTI-SAINTAGNE, Caroline</creator>
<creator>Bertocchi, Evangelista</creator>
<creator>Le Dantec, Loick</creator>
<creator>Graignic, Noemie</creator>
<creator>Jauffres, A.</creator>
<creator>Casasoli, M.</creator>
<creator>Chancerel, Emilie</creator>
<creator>Bodénès, Catherine</creator>
<creator>Alberto, Florian</creator>
<creator>Kremer, Antoine</creator>
<contributor>Biodiversité, Gènes et Communautés ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Ecologie des forêts de Guyane (ECOFOG) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD) - Institut National de la Recherche Agronomique (INRA) - Université des Antilles et de la Guyane (UAG) - AgroParisTech - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Espèces Fruitières ; Institut National de la Recherche Agronomique (INRA)</contributor>
<contributor>Biodiversité, Gènes & Communautés (BioGeCo) ; Institut National de la Recherche Agronomique (INRA) - Université de Bordeaux (UB)</contributor>
<source>ISSN: 0018-067X</source>
<source>EISSN: 0018-067X</source>
<source>Heredity</source>
<publisher>Nature Publishing Group</publisher>
<identifier>hal-01032156</identifier>
<identifier>https://hal.archives-ouvertes.fr/hal-01032156</identifier>
<source>https://hal.archives-ouvertes.fr/hal-01032156</source>
<source>Heredity, Nature Publishing Group, 2010, 105 (4), pp.401-411. 〈10.1038/hdy.2009.170〉</source>
<identifier>DOI : 10.1038/hdy.2009.170</identifier>
<relation>info:eu-repo/semantics/altIdentifier/doi/10.1038/hdy.2009.170</relation>
<language>en</language>
<subject lang=fr>nucleotide diversity</subject>
<subject lang=fr>candidate gene</subject>
<subject lang=fr>QTL</subject>
<subject lang=fr>locus à effets quantitatifs</subject>
<subject lang=fr>chêne rouvre</subject>
<subject lang=fr>quercus petraea</subject>
<subject>[SDV.MHEP] Life Sciences [q-bio]/Human health and pathology</subject>
<type>info:eu-repo/semantics/article</type>
<type>Journal articles</type>
<description lang=en>Nucleotide diversity was assessed within nine candidate genes (in total 4.6 kb) for the time of bud burst in nine sessile oak (Quercus petraea) populations distributed in central and northern Europe. The sampled populations were selected on the basis of their contrasting time of bud burst observed in common garden experiments (provenance tests). The candidate genes were selected according to their expression profiles during the transition from quiescent to developing buds and/or their functional role in model plants. The overall nucleotide diversity was large (pi(tot) - 6.15 x 10(-3); pi(silent) - 11.2 x 10(-3)), but population differentiation was not larger than for microsatellites. No outlier single-nucleotide polymorphism (SNP), departing from neutral expectation, was found among the total of 125 SNPs. These results contrasted markedly with the significant associations that were observed between the candidate genes and bud burst in segregating populations. Quantitative trait loci (QTLs) for bud burst were identified for 13 year*site seasonal observations in a cloned mapping pedigree. Nineteen QTLs were detected, and QTLs located on linkage groups 2, 5 and 9 contributed repeatedly to more than 12% of the phenotypic variation of the trait. Eight genes were polymorphic in the two parents of the pedigree and could be mapped on the existing genetic map. Five of them located within the confidence intervals of QTLs for bud burst. Interestingly, four of them located within the three QTLs exhibiting the largest contributions to bud burst.</description>
<date>2010</date>
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