Éditeur(s) : HAL CCSD
Résumé : Carbon isotopic signature has been measured at the different stages of the soil CO2 efflux production in trenched and control plots to improve the knowledge about the physical and biochemical processes of the soil respiration. All the measurements of _13C have been performed using a mass-spectrometer.We have compared the isotopic signatures of the CO2 going out of the soil, the CO2 of the soil atmosphere, the organic carbon in the material that could be considered as the main soil respiration sources (live and dead roots, soil organic matter, aerial litter) and the CO2 produced by these sources in incubation jars. The aims of this study were to evaluate the possibilities to combine these different data sets to estimate the partitioning of soil respiration between its autotrophic and heterotrophic components, and to get more insight into potential fractionation during biochemical or diffusion processes. Measurements were conducted in a beech forest located at Hesse in the North East of France (site equipped with a flux tower and belonging to the CarboEurope network) and in a neotropical primary rainforest located at Paracou (French Guiana). Preliminary results show first a very tenuous difference between CO2 isotopic signatures of efflux coming from the trenched and control plots and, secondly, _13C significant divergences between bulk organic material and CO2 produced in the corresponding incubation jars. Our ability to use this kind of data for partitioning soil respiration into its main components will be discussed.
Geophysical Research Abstracts

hal-01031785
https://hal.archives-ouvertes.fr/hal-01031785

Éditeur(s) : HAL CCSD American Society for Biochemistry and Molecular Biology
Résumé : International audience
2-Amino-9H-pyrido[2,3-b]indole (AαC) is a carcinogenic heterocyclic aromatic amine (HAA) that arises in tobacco smoke. UDP-glucuronosyltransferases (UGTs) are important enzymes that detoxicate many procarcinogens, including HAAs. UGTs compete with P450 enzymes, which bioactivate HAAs by N-hydroxylation of the exocyclic amine group; the resultant N-hydroxy-HAA metabolites form covalent adducts with DNA. We have characterized the UGT-catalyzed metabolic products of AαC and the genotoxic metabolite 2-hydroxy-amino-9H-pyrido[2,3-b]indole (HONH-AαC) formed with human liver microsomes, recombinant human UGT isoforms, and human hepatocytes. The structures of the metabolites were elucidated by 1H-NMR and mass spectrometry. AαC and HONH-AαC underwent glucuronidation, by UGTs, to form, respectively, N2-(β-D-glucosidurony1)-2-amino-9H-pyrido[2,3-b]indole (AαC-N2-Gl) and N2-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AαC-HON2-Gl). HONH-AαC also underwent glucuronidation to form a novel O-glucuronide conjugate, O-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AαC-HN2-O-Gl). AαC-HN2-O-Gl is a biologically reactive metabolite that bound to calf thymus DNA (pH 5.0 or pH 7.0) to form the N-(deoxyguanosin-8-yl)-AαC (dG-C8-AαC) adduct at 20 to 50-fold higher levels than the adduct levels formed with HONH-AαC. Major UGT isoforms were examined for their capacity to metabolize AαC and HONH-AαC. UGT1A4 was the most catalytically efficient enzyme (Vmax/Km) at forming AαC-N2-Gl (0.67 μL mg protein-1 min-1), UGT1A9 was most catalytically efficient at forming AαC-HN-O-Gl (77.1 μL mg protein-1 min-1), whereas, UGT1A1 was most efficient at forming AαC-HON2-Gl (5.0 μL mg protein-1 min-1). Human hepatocytes produced AαC-N2-Gl and AαC-HN2-O-Gl in abundant quantities, but AαC-HON2-Gl was a minor product. Thus, UGTs, usually important enzymes in the detoxication of many procarcinogens, serve as a mechanism of bioactivation of HONH-AαC.
Journal of Biological Chemistry

hal-00688369
https://hal.archives-ouvertes.fr/hal-00688369
DOI : 10.1074/jbc.M111.320093
PUBMED : 22393056

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Unravelling the detailed pressure–temperature–time-deformation (P–T–t-D) evolution of magmatic and metamorphic rocks provides essential insights into the timing and duration of partial melting and related plutonism during crustal flow and migmatitic dome formation. The Montagne Noire Axial Zone (MNAZ) is a migmatitic dome located within the Variscan orogen in the southern French Massif Central. The timing of the main thermal event that was responsible for intense partial melting is still highly debated. In this study we present new laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) age data on micaschists, migmatites and granites that clarify the P–T–t-D evolution of the MNAZ. Structurally controlled samples were collected in order to constrain the timing of metamorphism, migmatization and plutonism regarding the main structural pattern D1, D2 and D3. D1 and D2 correspond to nappe stacking and dextral transpression, respectively. D3 is related to vertical shortening and coaxial thinning with a preferential NE–SW- to E–W-directed stretching. LA-ICP-MS analyses on the syntectonic Anglès, Soulié and Martys granites yielded U–Th/Pb monazite ages of 305 ± 1.5, 306 ± 1.9 and 314 ± 2 Ma, respectively. Five migmatitic rocks sampled in the eastern and central Espinouse area yielded in situ ages ranging between 312 ± 2 and 301 ± 2 Ma. Along the dome envelope, two garnet–staurolite-bearing micaschists near Saint-Pons-de-Thomières village gave in situ U–Th–Pb ages of 312.1 ± 2.1 and 309.0 ± 3.1 Ma. A fine-grained gneiss with a D3 fabrics in the eastern dome envelope yield a 208Pb/232Th mean age at 305.7 ± 3.9 Ma. All ages obtained in this study for the micaschists, migmatites and granites range between 315 and 301 Ma. We interpret this time span as the record of the high thermal event responsible for intense crustal partial melting within the lower and middle crust. The onset of partial melting occurred at ca. 315 Ma that marked the beginning of transpressional deformation D2. Based on structural and petrological studies, our new U–Th–Pb results suggest that (1) partial melting may have started at ca. 315 Ma and lasted 15–10 Myr and (2) D2 et D3 developed between 315 and 300 Ma and were synchronous. D1 deformation ended at 315 Ma. The onset and duration of D1 related to nappe stacking and crustal thickening is still uncertain.
ISSN: 1437-3254

hal-01526942
https://hal.archives-ouvertes.fr/hal-01526942
DOI : 10.1007/s00531-016-1417-x

Résumé : Les venins sont des armes sophistiquées, utilisées par les organismes venimeux pour se défendre des prédateurs, ainsi que pour paralyser et tuer leurs proies. Mais dans la nature, le bien n’est jamais très loin du mal, les toxines venimeuses pouvant se révéler être des agents thérapeutiques efficaces. Les peptides de venins de fourmis ont donc été étudiés dans cette thèse afin de déterminer le potentiel de ces toxines pour la découverte de molécules thérapeutiques innovantes. A l’instar des autres venins d’insectes, les venins de fourmis restent peu étudiés, principalement en raison de la petite taille de ces insectes et des quantités limitées de venins disponibles. Cependant, les fourmis offrent l’avantage d’être des insectes sociaux très abondants dans tous les milieux terrestres. En collectant les venins de plusieurs individus, il est donc possible d’obtenir des quantités suffisantes de venin pour les analyses biochimiques et pharmacologiques.Afin d’assurer la reproductibilité des analyses, une identification taxonomique correcte est nécessaire. Dans cette optique, un outil de chimiotaxonomie a été développé durant cette thèse (permettant ainsi de regrouper les venins provenant de plusieurs colonies afin de compenser les faibles quantités de matériel biologique par individu ou par colonie).Ensuite, nous nous sommes intéressés aux facteurs écologiques impliqués dans la diversification des venins de fourmis. Pour cela, la toxicité et la composition des venins de fourmis ont été analysés en relation avec le polyéthisme, la spécialisation alimentaire et la spécialisation défensive.La diversité écologique des fourmis a amplement contribuée à la diversification des venins. En étudiant les venins de 82 espèces de fourmis, nous avons révélé la grande diversité structurale des toxines. Bien que la majorité des peptidomes sont composés par de petits peptides linéaires, des peptides structurés par des ponts disulfure ont été révélés dans de nombreux venins et constituent de nouvelles familles structurales de toxines.La purification de certains de ces peptides à ponts disulfure a permis leur caractérisation biochimique et l’évaluation de leur rôle biologique. Ainsi nous avons décrit un groupe de peptides neurotoxiques, baptisés les formicitoxines qui sont capables de bloquer les canaux calcium humains de type L. La commutatoxine est, quant à elle, un peptide avec un pont disulfure qui semble activer les récepteurs humains TRPV1 et TRPV3 et laisse supposer une implication dans l’induction de la douleur chez les mammifères.La grande diversité des peptides mise en évidence dans les venins, associée à la grande diversité écologique et taxonomique des fourmis, suggère que les venins de fourmis constituent un nouveau champ d’exploration prometteur pour la recherche de molécules thérapeutiques et insecticides. Les venins de fourmis s’ajoutent à la chimiothèque conséquente déjà représentée par les venins des autres animaux venimeux.
Venoms are sophisticated weapons employed by venomous organisms to ward off predators, as well as to subdue and kill prey. However, in nature, good is never far from bad and venom toxins may prove to be efficient therapeutic agents. Ant venom peptides were investigated in the course of this thesis to evaluate their potential in the discovery of novel drugs. Like other insect venoms, ant venoms remain understudied, mainly due to the small size of individual ants and, so, the limited a mount of venom available. The ecological diversity of ants has largely contributed to venom diversification. By studying the venom peptidomes from 82 ant species, we have revealed the great structural diversity of the toxins. Although the majority of the peptidomes are comprised of small and linear peptides, peptides structured by disulfide bonds were also brought to light in numerous venoms and constitute novel structural classes of toxins. The purification of some of these disulfided peptides permitted their biochemical characterization and the assessment oft heir biological functions. The enormous peptide diversity revealed among venoms combined with the great ecological and taxonomical diversity of ants suggests that ant venoms constitute a promising new source in the search for both novel drugs and insecticides. Ant venom augments the vast bioactive molecules library represented by venoms from other venomous animals.

http://www.theses.fr/2015AGUY0829/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Cnidarian-dinoflagellate symbiosis mainly relies on nutrient recycling, thus providing both partners with a competitive advantage in nutrient-poor waters. Essential processes related to lipid metabolism can be influenced by various factors, including hyperthermal stress. This can affect the lipid content and distribution in both partners, while contributing to symbiosis disruption and bleaching. In order to gain further insight into the role and distribution of lipids in the cnidarian metabolism, we investigated the lipid composition of the sea anemone Anemonia viridis and its photosynthetic dinoflagellate endosymbionts (Symbiodinium). We compared the lipid content and fatty acid profiles of the host cellular layers, non-symbiotic epidermal and symbiont-containing gastrodermal cells, and those of Symbiodinium, in a mass spectrometry-based assessment. Lipids were more concentrated in Symbiodinium cells, and the lipid class distribution was dominated by polar lipids in all tissues. The fatty acid distribution between host cell layers and Symbiodinium cells suggested potential lipid transfers between the partners. The lipid composition and distribution was modified during short-term hyperthermal stress, mainly in Symbiodinium cells and gastrodermis. Exposure to elevated temperature rapidly caused a decrease in polar lipid C18 unsaturated fatty acids and a strong and rapid decrease in the abundance of polar lipid fatty acids relative to sterols. These lipid indicators could therefore be used as sensitive biomarkers to assess the physiology of symbiotic cnidarians, especially the effect of thermal stress at the onset of cnidarian bleaching. Overall, the findings of this study provide some insight on key lipids that may regulate maintenance of the symbiotic interaction.
ISSN: 1095-6433

hal-01546160
https://hal.archives-ouvertes.fr/hal-01546160
DOI : 10.1016/j.cbpa.2015.10.017

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We report trace element analyses from mineral phases in chondrules from carbonaceous chondrites (Vigarano, Renazzo, and Acfer 187), carried out by laser ablation inductively coupled plasma-mass spectrometry. Results are similar in all three meteorites. Mesostasis has rare earth element (REE) concentrations of 10-20 × CI. Low-Ca pyroxene has light REE (LREE) concentrations near 0.1 × CI and heavy REE (HREE) near 1 × CI, respectively. Olivine has HREE concentrations at 0.1-1 × CI and LREE around 10−2 × CI. The coarsest olivine crystals tend to have the most fractionated REE patterns, indicative of equilibrium partitioning. Low-Ca pyroxene in the most pyroxene-rich chondrules tends to have the lowest REE concentrations. Type I chondrules seem to have undergone a significant degree of batch crystallization (as opposed to fractional crystallization), which requires cooling rates slower than 1-100 K h−1. This would fill the gap between igneous calcium-aluminum-rich inclusions (CAIs) and type II chondrules. The anticorrelation between REE abundances and pyroxene mode may be understood as due to dilution by addition of silica to the chondrule melt, as in the gas-melt interaction scenario of Libourel et al. (2006). The rapid cooling rate (of the order of 1000 K h−1) which seems recorded by low-Ca pyroxene, contrasted with the more diverse record of olivine, may point to a nonlinear cooling history or suggest that formation of pyroxene-rich chondrule margins was an event distinct from the crystallization of the interior.
ISSN: 1086-9379

hal-00795434
https://hal.archives-ouvertes.fr/hal-00795434
DOI : 10.1111/maps.12005