Éditeur(s) : Wiley-Blackwell Wiley-Blackwell
Résumé : (Acquisition) Collected for University of Florida's Institutional Repository by the UFIR Self-Submittal tool. Submitted by Yasemin Akdas.
(Publication Status) Published.
(Citation/Reference) This is the author's post-print. Please cite the final version of the article, available from the link on the cover page.

Droits : All rights reserved by the submitter.
http://ufdc.ufl.edu/IR00004302/00001

Éditeur(s) : Wiley-Blackwell
Résumé : The Climate Forecast System Reanalysis (CFSR) provides a wealth of information spanning 1979–2009 for investigation of ocean wind and wave climate. Preprocessing of the data is necessary to remove the dominant seasonal signals and to create time series of semimonthly averaged wind speed and significant wave height over a 0.5° global grid. We perform an empirical orthogonal function (EOF) analysis to extract the dominant space-time patterns. The results for the three major ocean basins show strong zonal structures in the winds and saturation of the swells corroborating prior works with various data sets. We reexamine the CFSR data in the frequency domain to identify periodic signals associated with published climate indices. The Fourier transform of the preprocessed time series generates spectra ranging from 1 month to 15 years period for an EOF analysis. The results demonstrate the spatial structures and periods of climate phenomena. The Arctic Oscillation dominates the Atlantic basin with a broad range of intra-annual signals off the European coasts. The Indian and Pacific Oceans are strongly influenced by inter-annual cycles of the El Niño Southern Oscillation (ENSO) and the Antarctica Oscillation. The Indian Ocean also has strong intra-annual components ranging from 50 to 80 days period. The ENSO proves to be a ubiquitous signal around the globe, and in particular, saturates the Pacific with strong influences in the equatorial region and the Southern Hemisphere Westerlies. A commonality of all basins is that the magnitude and the spatial structure of the intra-annual and inter-annual signals are similar suggesting a wide range of periods in each of the climate cycles examined.
Journal of Geophysical Research: Oceans (21699275) (Wiley-Blackwell), 2014-08 , Vol. 119 , N. 8 , P. 5563-5584

Droits : 2014. American Geophysical Union. All Rights Reserved.
http://archimer.ifremer.fr/doc/00210/32149/30606.pdf
http://archimer.ifremer.fr/doc/00210/32149/30607.pdf
DOI:10.1002/2013JC009729
http://archimer.ifremer.fr/doc/00210/32149/

Éditeur(s) : Wiley
Résumé : This paper investigates some economic consequences of creating a marine reserve on both fishing and ecotourism, when the range of controllability of fishing effort is limited and the impact of the reserve on ecosystem is considered. The issue is illustrated by the example of creating a no-take zone in part of a region where fishing is managed through a limited entry license system, and which is inhabited by two interacting stocks: a stock of prey (fish) and a stock of predators (seals). While the former is targeted by commercial fishing, the latter is not subject to harvest but is a potential basis for a commercial non-extractive activity (seal watching). Analysis is conducted with the help of a bioeconomic model combining the features of marine reserve modeling and of multispecies modeling. Following a description of the model, results of several simulation runs are presented. These show that creating a marine reserve has more complex economic implications than predicted in studies focused exclusively on one stock and/or commercial fisheries. More specifically, the model shows that the dynamics of the two interacting stocks reduces the benefits of the no-take zone for the fishing industry, while it makes the creation of this zone provide an opportunity for the development of ecotourism. Due to this dynamics, the model suggests that the optimal size of the reserve is larger when ecotourism is taken into account along with fishing activities.
Natural Resource Modeling (1939-7445) (Wiley), 2002-12 , Vol. 15 , N. 4 , P. 387–411

Droits : 2002 Rocky Mountain Mathematics Consortium
http://archimer.ifremer.fr/doc/00244/35506/34010.pdf
DOI:10.1111/j.1939-7445.2002.tb00095.x
http://archimer.ifremer.fr/doc/00244/35506/

Éditeur(s) : HAL CCSD Wiley-Blackwell Wiley
Résumé : The Late Early-to-Early Middle Eocene Zegdoumyidae are the oldest representatives of the order Rodentia to be known in Africa thus far. Despite the fragmentary nature of their fossil record, these early African rodents have been central in discussions surrounding the early evolutionary history of the Anomaluroidea clade (the living forms of which are the ‘scaly-tailed squirrels’, i.e. Anomaluridae). Here, we describe new dental remains attributable to Zegdoumys sbeitlai, a zegdoumyid from Tunisia (Djebel Chambi, CBI-1) dated at ca 50–45 Ma. The original material referred to this taxon was limited to four teeth documenting few dental loci. The new gathered material comprises practically all dental loci (except P4), thereby allowing a better description and characterization of this taxon. This Tunisian species is clearly distinct from its roughly coeval Algerian counterpart (Z. lavocati) or from the younger species recorded from Namibia (Z. namibiensis). We investigated the phylogenetic positions of Z. sbeitlai and the Zegdoumyidae in a high-level rodent phylogeny with a cladistic assessment of the dental evidence. Our results show that zegdoumyids represent the earliest offshoots (pectinately arranged) of a large clade that also encompasses the more advanced Eocene anomaluroids (here named Nementchamyidae), the Miocene Nonanomaluridae, and the stem and crown Anomaluridae. In this phylogenetic context, the species of Zegdoumys are the basalmost members of this large Anomaluroidea clade. Zegdoumyid taxa are therefore the oldest stem anomaluroid candidates, a statement which strengthens support for the hypothesis of the great antiquity of the Anomaluroidea clade in Africa. From a historical biogeography perspective, this assumption suggests that anomaluroids invaded Asia from Afro-Arabia sometime during the Middle Eocene, a dispersal event which was likely concomitant but opposite to the dispersals envisaged for the hystricognathous rodents and anthropoid primates from Asia to Afro-Arabia.
ISSN: 0300-3256

hal-01172007
https://hal.archives-ouvertes.fr/hal-01172007
DOI : 10.1111/zsc.12095

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Recent theoretical and field studies conducted in both terrestrial and marine ecosystems have suggested that diversity could be a more complex and multi-component concept than previously thought. However, it is still poorly understood to what extent the information provided by the various indices is complementary with regard to diversity, and to what extent this complementarity is reproducible in different situations or at different scales of observation. In the present work, we have analysed the reproducibility of the empirical relationships between 11 diversity indices related to four major aspects (components) of species diversity (species richness, rarity, evenness and species taxonomy) in order to determine whether there is a general pattern of redundancy or complementarity in diversity measures that holds across years, areas and spatial scales. We have applied this approach to groundfish diversity through the analysis of 2404 trawl hauls collected during the first large-scale annual surveys carried out using a single sampling design throughout the northern Mediterranean Sea (ranging from 36.3 to 45.7 degrees N, and 5.3 degrees W to 28 degrees E). Whatever the years, areas and scales studied, we found a strong reproducibility in the number and the nature of the main complementary components of diversity. The whole set of diversity indices considered may be roughly split into 6 complementary groups of descriptors. This result highlights that, in contrast to what is still the usual practice, monitoring diversity should not be based on only one or two of the most widely used components, even at large scale. Finally, in a context where developing tools for monitoring diversity is considered as a high priority worldwide, the strong reproducibility of the relationships between diversity indices we observed offers a basis for discussion of the feasibility and relevance of proposing a general shortlist of indices for monitoring diversity at different management scales.
Ecography (0906-7590) (Wiley-blackwell Publishing, Inc), 2010-12 , Vol. 33 , N. 6 , P. 1123-1135

Droits : 2010 The Authors / Ecography
http://archimer.ifremer.fr/doc/00029/14064/11382.pdf
DOI:10.1111/j.1600-0587.2009.06259.x
http://archimer.ifremer.fr/doc/00029/14064/

Éditeur(s) : Wiley / Blackwell
Résumé : P>New seismic reflection data from the Grand Banks of Newfoundland and the Newfoundland Basin add to the growing knowledge of the composition, structure and history of this non-volcanic margin. Geophysical imaging is now approaching the extent of that done previously on the conjugate margin along Iberia, providing a valuable database for the development of rifting models. Two parallel profiles over the shelf platform image deep crustal fabric representing Precambrian or possibly Appalachian deformation as well as Mesozoic extension. Progressively more intense extension of continental crust is imaged oceanwards without the highly reflective detachments frequently seen on profiles off Galicia. A landward-dipping event 'L' is imaged sporadically and appears to be analogous to a similar event on the Iberian IAM9 profile. The transition zone is probably exposed serpentinized mantle as interpreted off the Iberian margin although there appears to be a difference in the character of ridge development and reflectivity. The distinctive 'U' reflection identified previously at the base of the Newfoundland Basin deep water sedimentary section and recently identified as one or more thin basalt sills is imaged on newly presented profiles that connect previously published profiles SCR3 and SCR2 showing that 'U' is highly regular and continuous except where interrupted by basement highs. 'U' is also seen to have a major impact on the ability to image underlying basement. A full transect beginning over completely unextended continental crust through to oceanic crust has provided a data set from which estimates of extension and the pre-rifting location of the present continental edge can be made. Two estimates were obtained; 85 km based on faulting and 120 km based on crustal thickness.
Geophysical Journal International (0956-540X) (Wiley / Blackwell), 2009-08 , Vol. 178 , N. 2 , P. 1004-1020

Droits : 2009 Wiley / Blackwell
http://archimer.ifremer.fr/doc/2009/publication-6919.pdf
DOI:10.1111/j.1365-246X.2009.04162.x
http://archimer.ifremer.fr/doc/00000/6919/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : P>Torsvik et al. recently presented a revised model for the opening of the South Atlantic Ocean. According to these authors, this new plate tectonic model is internally consistent and consistent with globally balanced plate motion solutions and takes into account realistic intraplate deformation. However, this model shows a number of kinematic and geological problems that we underline here, together with some comparisons with the new kinematic model recently proposed by Moulin et al.
Geophysical Journal International (0956-540X) (Wiley-blackwell Publishing, Inc), 2010-10 , Vol. 183 , N. 1 , P. 20-28

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00014/12504/9878.pdf
DOI:10.1111/j.1365-246X.2010.04727.x
http://archimer.ifremer.fr/doc/00014/12504/

Éditeur(s) : Wiley InterScience
Résumé : This paper reports on the status and design of the operational remotely operated vehicle Victor 6000, rated for 6000 m depth and of the 3000 m depth autonomous underwater vehicle Asterxx operated by Ifremer the French Institute for Sea Exploitation. Victor 6000 is part of a global system built of subsystems, scientific modules, winch and cable, dead weight and umbilical, positioning subsystem using acoustic ultra short base line (USBL) techniques, and software for data and dive management. In 2005 the system was equipped with a second toolsled dedicated to high resolution mapping of the sea bed, with both acoustical and optical devices. Asterxx, the first autonomous underwater vehicle (AUV) developed by IFREMER, is 4.5 m in length with a diameter of 0.69 m. Depending on the payload, its weight is between 600 and 800 kg in air,with a diving depth of 3000 m. Its cruising speed is between 0.5 and 2.5 ms. The AUV is capable of carrying various payloads for a wide spectrum of applications. The vehicle can cruise up to 100 km. For coastal applications this vehicle is operable by a limited crew potentially from a nonspecialized vessel. Both vehicles are used for oceanography as well as to continually evolve underwater systems to address new scientific challenges.
Journal of Field Robotics (1556-4959) (Wiley InterScience), 2007-06 , Vol. 24 , N. 6 , P. 449-459

Droits : 2007 Wiley InterScience
http://archimer.ifremer.fr/doc/2007/publication-2806.pdf
DOI:10.1002/rob.20195
http://archimer.ifremer.fr/doc/00000/2806/

Éditeur(s) : Wiley / Blackwell
Résumé : P>The distribution of the archaeal communities in deep subseafloor sediments [0-36 m below the seafloor (mbsf)] from the New Caledonia and Fairway Basins was investigated using DNA- and RNA-derived 16S rRNA clone libraries, functional genes and denaturing gradient gel electrophoresis (DGGE). A new method, Co-Migration DGGE (CM-DGGE), was developed to access selectively the active archaeal diversity. Prokaryotic cell abundances at the open-ocean sites were on average similar to 3.5 times lower than at a site under terrestrial influence. The sediment surface archaeal community (0-1.5 mbsf) was characterized by active Marine Group 1 (MG-1) Archaea that co-occurred with ammonia monooxygenase gene (amoA) sequences affiliated to a group of uncultured sedimentary Crenarchaeota. However, the anoxic subsurface methane-poor sediments (below 1.5 mbsf) were dominated by less active archaeal communities, such as the Thermoplasmatales, Marine Benthic Group D and other lineages probably involved in the methane cycle (Methanosarcinales, ANME-2 and DSAG/MBG-B). Moreover, the archaeal diversity of some sediment layers was restricted to only one lineage (Uncultured Euryarchaeota, DHVE6, MBG-B, MG-1 and SAGMEG). Sequences forming two clusters within the Thermococcales order were also present in these cold subseafloor sediments, suggesting that these uncultured putative thermophilic archaeal communities might have originated from a different environment. This study shows a transition between surface and subsurface sediment archaeal communities.
Environmental Microbiology (1462-2912) (Wiley / Blackwell), 2009-09 , Vol. 11 , N. 9 , P. 2446-2462

Droits : 2009 Society for Applied Microbiology and Wiley - Blackwell Publishing Ltd.
http://archimer.ifremer.fr/doc/2009/publication-6801.pdf
DOI:10.1111/j.1462-2920.2009.01976.x
http://archimer.ifremer.fr/doc/00000/6801/

Éditeur(s) : John Wiley & Sons
Résumé : Based on all available seismic refraction data, the seismic structure of the Western Approaches to the English Channel and the South Armorican continental shelf has been established. The correlation of seismic velocities showed a three-fold structure, related to geological layers as follows: 1. High-velocity, deep sequence (4.4-6.6km/sec): metamorphic basement and Lower to Middle Palaeozoic. 2. Intermediate sequence (3.6-4.3km/sec): Permo-Triassic (and Jurassic?) and possibly also Lower Cretaceous on the margin of the Western Approaches. 3. Upper sequence (1.9-3.6km/sec): Cretaceous and Cenozoic sediments. An acoustic unconformity appears to be present between the Upper sequence and the High velocity and Intermediate sequences. Different geomorphology characterizes these layers: the Palaeozoic is tectonized and generally follows the Hercynian structural trends; mainly Permo-Triassic sediments fill the depressions of the Palaeozoic floor, but only in the Western Approaches; eastwards-transgressive Cretaceous and Cenozoic sediments cover discordantly the preceding layers. [NOT CONTROLLED OCR]
Petroleum and the continental shelf of North-west Europe (John Wiley & Sons), 1975 , P. 29-43

Droits : John Wiley & Sons
http://archimer.ifremer.fr/doc/1975/publication-5465.pdf
http://archimer.ifremer.fr/doc/00000/5465/

Éditeur(s) : Wiley-blackwell
Résumé : Aim The aims of this study were: (1) to identify global communities of tuna and billfish species through quantitative statistical analyses of global fisheries data; (2) to describe the spatial distribution, main environmental drivers and species composition of each community detected; and (3) to determine whether the spatial distribution of each community could be linked to the environmental conditions that affect lower trophic levels by comparing the partitions identified in this study with Longhursts biogeochemical provinces. Location The global ocean from 60 degrees S to 65 degrees N. Methods We implemented a new numerical procedure based on a hierarchical clustering method and a nonparametric probabilistic test to divide the oceanic biosphere into biomes and ecoregions. This procedure was applied to a database that comprised standardized data on commercial longline catches for 15 different species of tuna and billfish over a period of more than 50 years (i.e. 1953-2007). For each ecoregion identified (i.e. characteristic tuna and billfish community), we analysed the relationships between species composition and environmental factors. Finally, we compared the biogeochemical provinces of Longhurst with the ecoregions that we identified. Results Tuna and billfish species form nine well-defined communities across the global ocean. Each community occurs in regions with specific environmental conditions and shows a distinctive species composition. High similarity (68.8% homogeneity) between the spatial distribution of the communities of tuna and billfish and the biogeochemical provinces suggests a strong relationship between these species and the physical and chemical characteristics of the global ocean. Main conclusions Despite their high tolerance for a wide range of environmental conditions, these highly migratory species are partitioned into clear geographical communities in the ocean at a global scale. The similarity between biogeochemical and biotic divisions in the ocean suggests that the global ocean is a mosaic of large biogeographical ecosystems, each characterized by specific environmental conditions that have a strong effect on the composition of the trophic web.
Journal Of Biogeography (0305-0270) (Wiley-blackwell), 2012-01 , Vol. 39 , N. 1 , P. 114-129

Droits : 2011 Blackwell Publishing Ltd
http://archimer.ifremer.fr/doc/00060/17141/14716.pdf
DOI:10.1111/j.1365-2699.2011.02582.x
http://archimer.ifremer.fr/doc/00060/17141/

Éditeur(s) : Wiley-blackwell
Résumé : A new benthic dinoflagellate species, Prorocentrum bimaculatum sp. nov., is studied from Kuwaits marine sediments, based on detailed morphological and molecular data. Cells are large, oblong oval in shape. They are 49.955.3 mu m long and 38.443.2 mu m wide. The ornamentation of this new species is peculiar, and characterized by smooth valves with large pores (0.320.50 mu m) scattered on their surface, except in two circular patches of similar to 15 mu m in diameter, devoid of ornamentation and located on both sides of the valve centers. The periflagellar area is widely triangular, located in a moderate excavation of the right valve, and comprises nine platelets. The intercalary band of P. bimaculatum is smooth. The molecular phylogenetic position of this new taxon was inferred from SSU and LSU rDNA genes. In both phylogenetic analyses, P. bimaculatum branched with high support with Prorocentrum consutum and formed a clade sister to the one including P. lima and related species such as P. arenarium, P. belizeanum, P. hoffmannianum, and P. maculosum. From the phylogenetic study, since most species related to P. bimaculatum are known for their toxic effects and production of okadaic acid, this new species can be considered as a potential toxin producer, but this has to be analyzed.
Journal Of Phycology (0022-3646) (Wiley-blackwell), 2012-02 , Vol. 48 , N. 1 , P. 211-221

Droits : 2012 Phycological Society of America
http://archimer.ifremer.fr/doc/00066/17756/15698.pdf
DOI:10.1111/j.1529-8817.2011.01102.x
http://archimer.ifremer.fr/doc/00066/17756/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Microalgae in the division Haptophyta play key roles in the marine ecosystem and in global biogeochemical processes. Despite their ecological importance, knowledge on seasonal dynamics, community composition and abundance at the species level is limited due to their small cell size and few morphological features visible under the light microscope. Here, we present unique data on haptophyte seasonal diversity and dynamics from two annual cycles, with the taxonomic resolution and sampling depth obtained with high-throughput sequencing. From outer Oslofjorden, S Norway, nano- and picoplanktonic samples were collected monthly for 2years, and the haptophytes targeted by amplification of RNA/cDNA with Haptophyta-specific 18S rDNA V4 primers. We obtained 156 operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented uncultured and/or not yet 18S rDNA-sequenced species. Haptophyte OTU richness and community composition exhibited high temporal variation and significant yearly periodicity. Richness was highest in September-October (autumn) and lowest in April-May (spring). Some taxa were detected all year, such as Chrysochromulina simplex, Emiliania huxleyi and Phaeocystis cordata, whereas most calcifying coccolithophores only appeared from summer to early winter. We also revealed the seasonal dynamics of OTUs representing putative novel classes (clades HAP-3-5) or orders (clades D, E, F). Season, light and temperature accounted for 29% of the variation in OTU composition. Residual variation may be related to biotic factors, such as competition and viral infection. This study provides new, in-depth knowledge on seasonal diversity and dynamics of haptophytes in North Atlantic coastal waters. See also the Perspective by Massana
ISSN: 0962-1083

hal-01545321
https://hal.archives-ouvertes.fr/hal-01545321
DOI : 10.1111/mec.13160

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
TMPRSS2/ERG fusion resulting in ERG overexpression occurs in 30 to 50% of prostate cancer (PCa) in Caucasian patients, but its prognostic relevance remains controversial. In the present study, we investigated ERG expression in all stages of PCa progression, and evaluated the prognostic impact of ERG status in clinically localized PCa (CLC) and in castration resistant disease (CRPC). ERG and AR expressions were evaluated by immunohistochemistry on tissue microarrays containing samples of high grade PIN (n = 57), CLC surgically treated (n = 299, including 185 Caucasians and 114 African-Caribbeans), metastases (n = 17), and CRPC (n = 41). In Caucasians, ERG expression significantly increased from high grade PIN (17.5%) to pT2 (27%) and pT3 CLC (43%), then to metastases (53%). In CLC, stainings for ERG and AR were correlated, and ERG expression was less frequent in African-Caribbeans compared to Caucasians (11.5% vs. 33%). In Caucasians CLC, ERG was associated with longer recurrence free survival, after adjusting for classical prognostic markers. In CRPC, ERG was expressed in 29% of cases, and was associated with a longer overall survival. Our results confirm that ERG expression is less frequent in PCa from patients of African descent. Although ERG expression increases during PCa natural history, positive ERG status is associated with better outcome in both CLC and CRPC. This paradox could be explained in part by the fact that ERG expression is AR dependant, then ERG positive cancers are likely to progress in a rich androgen environment, with a better response to androgen suppression.
ISSN: 0270-4137

hal-01118555
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118555
DOI : 10.1002/pros.22863
PUBMED : 25175352

Éditeur(s) : HAL CCSD Wiley
Résumé : The allocation and cycling of carbon (C) within forests is an important component of the biospheric C cycle, but is particularly understudied within tropical forests. We synthesise reported and unpublished results from three lowland rainforest sites in Amazonia (in the regions of Manaus, Tapajos and Caxiuana), all major sites of the Large-Scale Biosphere-Atmosphere Programme (LBA). We attempt a comprehensive synthesis of the C stocks, nutrient status and, particularly, the allocation and internal C dynamics of all three sites. The calculated net primary productivities (NPP) are 10.1 +/- 1.4 Mg C ha(-1) yr(-1) (Manaus), 14.4 +/- 1.3 Mg C ha(-1) yr(-1) (Tapajos) and 10.0 +/- 1.2 Mg C ha(-1) yr(-1) (Caxiuana). All errors bars report standard errors. Soil and leaf nutrient analyses indicate that Tapajos has significantly more plant-available phosphorus and calcium. Autotrophic respiration at all three sites (14.9-21.4 Mg C ha yr(-1)) is more challenging to measure, with the largest component and greatest source of uncertainty being leaf dark respiration. Comparison of measured soil respiration with that predicted from C cycling measurements provides an independent constraint. It shows general good agreement at all three sites, with perhaps some evidence for measured soil respiration being less than expected. Twenty to thirty percent of fixed C is allocated belowground. Comparison of gross primary productivity (GPP), derived from ecosystem flux measurements with that derived from component studies (NPP plus autotrophic respiration) provides an additional crosscheck. The two approaches are in good agreement, giving increased confidence in both approaches to estimating GPP. The ecosystem carbon-use efficiency (CUEs), the ratio of NPP to GPP, is similar at Manaus (0.34 +/- 0.10) and Caxiuana (0.32 +/- 0.07), but may be higher at Tapajos (0.49 +/- 0.16), although the difference is not significant. Old growth or infertile tropical forests may have low CUE compared with recently disturbed and/or fertile forests.
ISSN: 1354-1013

hal-01032150
https://hal.archives-ouvertes.fr/hal-01032150
DOI : 10.1111/j.1365-2486.2008.01780.x

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Benthic microbial fuel cells (BMFCs) are continuous electricity generators using electroactive microorganisms and organic matter from aquatic environment, respectively, as catalysts and substrate. In this paper, first a low-cost PVC-made structure is constructed to harvest electricity from mangrove environment located in French Guiana. An in situ BMFC has given power density of 30 mW/m2 of the anodic surface area. This performance has been confirmed by experience in laboratory where inter-electrode distance and electrode surface area appeared to be power increasing factors. However, the output power of one BMFC is not used to supply real devices such as autonomous sensors. Second, to meet this expectation, in parallel and in series associations were considered. These associations were made in order to increase the output voltage and consequently the power, to reach levels that can supply small sensors (about 3 V). Finally, to improve the performance of the series association and to avoid the voltage reversal phenomenon, a voltage balancing circuit was simulated and added to the series connections. With balancing method, the cell voltage of BMFCs can be equalized, and the performances can be improved. This allows an optimal energy harvesting and a better global efficiency of the set.
ISSN: 0363-907X

hal-01683128
https://hal.univ-antilles.fr/hal-01683128
DOI : 10.1002/er.3270

Éditeur(s) : HAL CCSD Wiley
Résumé : Unveiling the genetic basis of local adaptation to environmental variation is a major goal in molecular ecology. In rugged landscapes characterized by environmental mosaics, living populations and communities can experience steep ecological gradients over very short geographical distances. In lowland tropical forests, interspecific divergence in edaphic specialization (for seasonally flooded bottomlands and seasonally dry terra firme soils) has been proven by ecological studies on adaptive traits. Some species are nevertheless capable of covering the entire span of the gradient; intraspecific variation for adaptation to contrasting conditions may explain the distribution of such ecological generalists. We investigated whether local divergence happens at small spatial scales in two stands of Eperua falcata (Fabaceae), a widespread tree species of the Guiana Shield. We investigated Single Nucleotide Polymorphisms (SNP) and sequence divergence as well as spatial genetic structure (SGS) at four genes putatively involved in stress response and three genes with unknown function. Significant genetic differentiation was observed among sub-populations within stands, and eight SNP loci showed patterns compatible with disruptive selection. SGS analysis showed genetic turnover along the gradients at three loci, and at least one haplotype was found to be in repulsion with one habitat. Taken together, these results suggest genetic differentiation at small spatial scale in spite of gene flow. We hypothesize that heterogeneous environments may cause molecular divergence, possibly associated to local adaptation in E. falcata.
ISSN: 1010-061X

hal-01032412
https://hal.archives-ouvertes.fr/hal-01032412
DOI : 10.1111/jeb.12069

Éditeur(s) : Wiley-blackwell
Résumé : Marine bacteria are a rich source of bioactive metabolites. However, the microbial diversity of marine ecosystem still needs to be explored. The aim of this study was to isolate and characterize bacteria with antimicrobial activities from various marine coastal environment of New Caledonia. We obtained 493 marine isolates from various environments and samples of which 63 (12.8%) presented an antibacterial activity against a panel of reference pathogenic strains (Staphylococcus aureus, Pseudomonas aeruginosa, Escherichia coli and Enterococcus faecalis). Ten out of the most promising strains were cultured, fractionated and screened for antibacterial activity. Four of them (NC282, NC412, NC272 and NC120) showed at least an activity against reference and multidrug-resistant pathogenic strains and were found to belong to the genus Pseudoalteromonas, according to the 16S phylogenetic analysis. The NC282 strain does not belong to any described Pseudoalteromonas species and might be of interest for further chemical and biological characterization. These findings suggest that the identified strains may contribute to the discovery for new sources of antimicrobial substances to develop new therapies to treat infections caused by multidrug-resistant bacteria.
Letters In Applied Microbiology (0266-8254) (Wiley-blackwell), 2014-02 , Vol. 58 , N. 2 , P. 102-108

Droits : 2013 The Society for Applied Microbiology
http://archimer.ifremer.fr/doc/00174/28552/26994.pdf
DOI:10.1111/lam.12162
http://archimer.ifremer.fr/doc/00174/28552/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
1. Estimating forest above-ground biomass (AGB), or carbon (AGC), in tropical forests has become a majorconcern for scientists and stakeholders. However, AGB assessment procedures are not fully standardized andeven more importantly the uncertainty associated with AGB estimates is seldom assessed.2. Here, we present an R package designed to compute both AGB/AGC estimate and its associated uncertaintyfrom forest plot datasets, using a Bayesian inference procedure. The package builds upon previous work onpantropical and regional biomass allometric equations and published datasets by default but it can alsointegrate unpublished or complementary datasets in many steps.3. BIOMASS performs a number of standard tasks on input forest tree inventories: i) tree speciesidentification, if available, is automatically corrected; ii) wood density is estimated from tree species identity;iii) if height data are available, a local height-diameter allometry may be built; else height is inferred frompantropical or regional models; iv) finally, AGB/AGC are estimated by propagating the errors associated withall the calculation steps up to the final estimate. R code is given in the paper and in the appendix forillustration purpose.4. The BIOMASS package should contribute to improved standards for AGB calculation for tropical foreststands, and will encourage users to report the uncertainties associated with stand-level AGB/AGC estimatesin future studies.
ISSN: 2041-210X

hal-01558180
https://hal.archives-ouvertes.fr/hal-01558180
DOI : 10.1111/2041-210X.12753

Éditeur(s) : HAL CCSD Wiley
Résumé : absent
ISSN: 0014-3820

hal-01032044
https://hal.archives-ouvertes.fr/hal-01032044