Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ISSN: 0003-4975

hal-01563338
http://hal.univ-brest.fr/hal-01563338
DOI : 10.1016/j.athoracsur.2016.03.093
PUBMED : 27262916

Résumé : During the years 1972-1993, kepone a persistent pesticide has been used in the banana fields of the French West Indies (Martinique and Guadeloupe) to content a weevil. A slow desorption of the molecule from soil induces its transfer to the sea through the rivers from leaching and erosion. This study intended to take stock on the contamination by kepone of the fishery species around the islands fifteen years after the kepone ban. Furthermore other chemical pollutants were sought in fish and shellfish around the Martinique island. The results confirmed persistence of marine fauna contamination by kepone, mainly in the alluvium areas in front of polluted rivers. They shown also that this contamination may spread more widely but with fast decreasing through the marine food webs. For the other pollutants sought, the results were in general lower than the statutory values. Within these substances, only mercury gave a signal close to the prescribed threshold for top predator samples. Finally, on the whole the observed systems appeared preserved from human chemical pollutants, apart from kepone.
Pendant les années 1972-1993 un pesticide persistant, la chlordécone, a été utilisé dans les bananeraies des Antilles françaises (Martinique et Guadeloupe) pour lutter contre un charançon. Une désorption lente de la molécule fixée dans les sols conduit à son transfert progressif dans les milieux aquatiques puis vers le domaine marin au gré du lessivage et de l'érosion des sols contaminés. La présente étude visait à faire le point sur la contamination de la faune halieutique côtière des Antilles françaises quinze ans après l'interdiction d'usage de la molécule. En parallèle, une recherche systématique d'autres polluants chimiques a été effectuée sur des poissons et des crustacés ainsi que dans des sédiments autour de la Martinique. Les résultats confirment la persistance d'une contamination de la faune par la chlordécone, particulièrement dans les zones alluvionnaires des cours d'eau contaminés. Ils montrent également que cette contamination diffuse plus largement en s'atténuant, à travers les réseaux trophiques marins. Parmi les autres substances recherchées, les résultats dans les espèces d'intérêt halieutique se situent en général sous les concentrations maximales admissibles fixées par la réglementation. Parmi ces molécules, seul le mercure donne un signal de contamination proche de ce seuil chez des grands prédateurs. Ce constat souligne l'état de préservation des milieux observés vis-à-vis de la contamination chimique environnementale, hormis bien évidemment le cas de la chlordécone.

Droits : 2010 Onema / Ifremer
http://archimer.ifremer.fr/doc/2009/rapport-6896.pdf
http://archimer.ifremer.fr/doc/00000/6896/

Éditeur(s) : Inter-Research
Résumé : The species richness pattern of groundfish species in the entire northern Mediterranean Sea was examined at 3 spatial scales: region, large biogeographical zone and basin. We analysed 1914 trawl hauls collected using a single sampling design in the trawlable areas of the continental shelves between the Strait of Gibraltar and the Strait of Dardanelles (from 36.3 to 45.7 degrees N and 5.3 degrees W to 28 E). Spatial pattern in species diversity was assessed using complementary methods (Chao2 estimates of total species richness, mean species richness and beta diversity). No matter which scale was used, the expected longitudinally decreasing trend in species richness, which has been widely described in previous studies, did not appear when comparing estimates of total species richness per unit of area. Only the mean species richness pattern showed a moderate eastwards decrease at the largest spatial scale, but the trend progressively disappeared as the scale of analysis was reduced. In contrast to what is usually expected, our results suggest that Atlantic inflow does not play a key role in the present spatial pattern of fish species richness within the northern Mediterranean Sea. Furthermore, we show that the Aegean Sea can no longer be considered the least species-diverse zone in the northern Mediterranean Sea. Our results provide the first description of a quantitative 'reference state', with which the temporal changes in species richness patterns throughout the entire northern Mediterranean Sea can be compared in the future.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2007-07 , Vol. 341 , P. 191-203

Droits : 2007 Inter-Research
http://archimer.ifremer.fr/doc/2007/publication-3569.pdf
DOI:10.3354/meps341191
http://archimer.ifremer.fr/doc/00000/3569/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Recent theoretical and field studies conducted in both terrestrial and marine ecosystems have suggested that diversity could be a more complex and multi-component concept than previously thought. However, it is still poorly understood to what extent the information provided by the various indices is complementary with regard to diversity, and to what extent this complementarity is reproducible in different situations or at different scales of observation. In the present work, we have analysed the reproducibility of the empirical relationships between 11 diversity indices related to four major aspects (components) of species diversity (species richness, rarity, evenness and species taxonomy) in order to determine whether there is a general pattern of redundancy or complementarity in diversity measures that holds across years, areas and spatial scales. We have applied this approach to groundfish diversity through the analysis of 2404 trawl hauls collected during the first large-scale annual surveys carried out using a single sampling design throughout the northern Mediterranean Sea (ranging from 36.3 to 45.7 degrees N, and 5.3 degrees W to 28 degrees E). Whatever the years, areas and scales studied, we found a strong reproducibility in the number and the nature of the main complementary components of diversity. The whole set of diversity indices considered may be roughly split into 6 complementary groups of descriptors. This result highlights that, in contrast to what is still the usual practice, monitoring diversity should not be based on only one or two of the most widely used components, even at large scale. Finally, in a context where developing tools for monitoring diversity is considered as a high priority worldwide, the strong reproducibility of the relationships between diversity indices we observed offers a basis for discussion of the feasibility and relevance of proposing a general shortlist of indices for monitoring diversity at different management scales.
Ecography (0906-7590) (Wiley-blackwell Publishing, Inc), 2010-12 , Vol. 33 , N. 6 , P. 1123-1135

Droits : 2010 The Authors / Ecography
http://archimer.ifremer.fr/doc/00029/14064/11382.pdf
DOI:10.1111/j.1600-0587.2009.06259.x
http://archimer.ifremer.fr/doc/00029/14064/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Aims: The aims of this study were to compare short-and long-term outcomes for clinical T2N0 oesophageal cancer with analysis of (i) primary surgery (S) versus neoadjuvant therapy plus surgery (NS), (ii) squamous cell carcinoma and adenocarcinoma subsets; and (iii) neoadjuvant chemoradiotherapy versus neoadjuvant chemotherapy.Methods: Data were collected from 30 European centres from 2000 to 2010. Among 2944 included patients, 355 patients (12.1%) had cT2N0 disease; 285 (S) and 70 (NS), were compared in terms of short-and long-term outcomes. Propensity score matching analyses were used to compensate for differences in baseline characteristics.Results: No significant differences between the groups were shown in terms of in hospital morbidity and mortality. Nodal disease was observed in 50% of S-group at the time of surgery, with 20% pN2/N3. Utilisation of neoadjuvant therapy was associated with significant tumour downstaging as reflected by increases in pT0, pN0 and pTNM stage 0 disease, this effect was further enhanced with neoadjuvant chemoradiotherapy. After adjustment on propensity score and confounding factors, for all patients and subset analysis of squamous cell and adenocarcinoma, neoadjuvant therapy had no significant effect upon survival or recurrence (overall, loco-regional, distant or mixed) compared to surgery alone. There were no significant differences between neoadjuvant chemotherapy and chemoradiotherapy in short-or long-term outcomes.Conclusion: The results of this study suggest that a surgery alone treatment approach should be recommended as the primary treatment approach for cT2N0 oesophageal cancer despite 50% of patients having nodal disease at the time of surgery.
ISSN: 0959-8049

hal-01666517
https://hal.univ-lorraine.fr/hal-01666517
DOI : 10.1016/j.ejca.2015.11.024

Éditeur(s) : Amer Geophysical Union
Résumé : After the January 12, 2010, Haiti earthquake, we deployed a mainly offshore temporary network of seismologic stations around the damaged area. The distribution of the recorded aftershocks, together with morphotectonic observations and mainshock analysis, allow us to constrain a complex fault pattern in the area. Almost all of the aftershocks have a N-S compressive mechanism, and not the expected left-lateral strike-slip mechanism. A first-order slip model of the mainshock shows a N264 degrees E north-dipping plane, with a major left-lateral component and a strong reverse component. As the aftershock distribution is sub-parallel and close to the Enriquillo fault, we assume that although the cause of the catastrophe was not a rupture along the Enriquillo fault, this fault had an important role as a mechanical boundary. The azimuth of the focal planes of the aftershocks are parallel to the north-dipping faults of the Transhaitian Belt, which suggests a triggering of failure on these discontinuities. In the western part, the aftershock distribution reflects the triggering of slip on similar faults, and/or, alternatively, of the south-dipping faults, such the Trois-Baies submarine fault. These observations are in agreement with a model of an oblique collision of an indenter of the oceanic crust of the Southern Peninsula and the sedimentary wedge of the Transhaitian Belt: the rupture occurred on a wrench fault at the rheologic boundary on top of the under-thrusting rigid oceanic block, whereas the aftershocks were the result of the relaxation on the hanging wall along pre-existing discontinuities in the frontal part of the Transhaitian Belt. Citation: Mercier de Lepinay, B., et al. (2011), The 2010 Haiti earthquake: A complex fault pattern constrained by seismologic and tectonic observations, Geophys. Res. Lett., 38, L22305, doi:10.1029/2011GL049799.
Geophysical Research Letters (0094-8276) (Amer Geophysical Union), 2011-11 , Vol. 38 , N. L22305 , P. 7 p.

Droits : 2011 by the American Geophysical Union
http://archimer.ifremer.fr/doc/00054/16557/14071.pdf
DOI:10.1029/2011GL049799
http://archimer.ifremer.fr/doc/00054/16557/

Éditeur(s) : Edp Sciences S A
Résumé : This work aims to define a typology of trawler f1eet in Sète, the main fishing harbour along the French Mediterranean coast, using several multivariate analysis methods. The fishing ships taken to account are represented by annual profiles of landing specific compositions. Five fishing strategies have been identified. A segmentation method using symbolic objects allows a formaI characterisation of the different strategies. These strategies are studied according to several general characteristics usually used for management rules elaboration (power, length, ship age). The typological analysis allows to characterise two main exploitation ways, one directed to the catch of a few species (Engraulis encrasicolus, Sardina pilchardus), the other characterised by the exploitation of a great diversity of species. By this way, it is possible to estimate how the catch of low represented species can significantly contribute to the exploitation of a resource.
Cette étude s'appuie sur l'utilisation successive de plusieurs méthodes d'analyses multivariées pour réaliser une typologie de la flottille chalutière du port de Sète, principal port de pêche français de la Méditerranée. Les unités de pêche étudiées sont représentées à l'aide d'un profil annuel de la composition spécifique de leurs débarquements. Cinq stratégies de pêche ont ainsi pu être identifiées. La mise en oeuvre d'une méthode de segmentation permet une caractérisation formelle de ces différentes stratégies à l'aide d'objets symboliques. Les stratégies sont étudiées en référence à plusieurs caractéristiques générales couramment utilisées en gestion des flottilles de pêche (puissance, longueur, âge du bateau, etc.). L'analyse typologique mise en oeuvre au cours de l'étude permet de caractériser nettement deux grandes logiques d'exploitation, l'une orientée vers la recherche d'un très petit nombre d'espèces (Engraulis encrasicolus, Sardina pilchardus), l'autre déterminée par une grande diversité des captures. Elle permet également d'apprécier comment les captures d'espèces peu représentées dans certaines stratégies peuvent contribuer significativement à l'exploitation d'une ressource
Aquatic Living Resources (0990-7440) (Edp Sciences S A), 1997 , Vol. 10 , N. 3 , P. 137-148

Droits : IFREMER-Gauthier-Villars
http://archimer.ifremer.fr/doc/00113/22404/20101.pdf
DOI:10.1051/alr:1997015
http://archimer.ifremer.fr/doc/00113/22404/

Éditeur(s) : Elsevier
Résumé : The multi-component aspect of species diversity of groundfish assemblages was examined on the basis of a set of experimental trawl surveys conducted on the east coast of Corsica. We analysed and compared the structuration of diversity within three different bathymetric strata: the continental shelf (60-120 m depth), the upper slope (250-400 m) and the lower slope (450-570 m). For each of these three bathymetric strata, we simultaneously analysed 12 indices that are theoretically complementary and relate to 4 diversity components: (1) the number of species, (2) rarity, (3) evenness and (4) taxonomic diversity. Principal component analysis based on Spearman's correlation coefficients was carried out to investigate empirical relationships between the selected indices. Our results showed not only that a single diversity index cannot provide a complete view of the groundfish diversity along the east coast of Corsica, but also that-in some cases-one index cannot even encapsulate a complete description of a specific diversity component. We also found that the nature and the number of independent diversity components slightly varied from one bathymetric stratum to another. The main differences-which mainly occurred in the deepest bathymetric stratum-might be associated with lower density of individuals and lower dominance of some species at deeper depths. Finally, this study is the first dealing with groundfish diversity in this area, which is currently characterized by one of the lowest fishing intensity rates in the northern Mediterranean Sea. It might be considered as a first '' reference state '' with a view to monitoring the spatio-temporal changes in species diversity patterns along the east coast of Corsica in the future. (C) 2007 Elsevier B.V. All rights reserved.
Fisheries Research (0165-7836) (Elsevier), 2007-12 , Vol. 88 , N. 1-3 , P. 120-132

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3512.pdf
DOI:10.1016/j.fishres.2007.08.003
http://archimer.ifremer.fr/doc/00000/3512/

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Late Jurassic coral reefs are present in the Western High Atlas of Morocco along the eastern paleomargin of the young Atlantic Ocean. The Izwarn section shows two reef units made of scleractinian corals and microbialites, included in a progradational shallowing-upward succession. Changes in reefal composition and structure observed in a ca. 50 cm-thick interval at the base of the reef unit 1 are interpreted to represent the first well-documented ecological succession in Late Jurassic reefs. Bioclastic deposits, sparse and poorly diversified corals (five genera) preserved in life position, and finally a more diversified coral assemblage (11 genera) building a reef framework with stromatolitic crusts reflect pioneer, colonization and diversification stages, respectively. A specific depth window, where light was reduced but sufficient for a catch-up growth mode and below the erosive action of waves, probably at the lower slope of a fore-reef area, has made possible the development and the record of this ecological succession. With a more diversified coral assemblage (16 genera), the reef unit 2 reflects shallower and well-agitated waters of a fore-reef area. Overlaying this second reef unit, the upper part of the section reveals back-reef deposits made of reworked reef elements, whereas a putative reef crest area is not recorded.
ISSN: 0016-6995

hal-00795549
https://hal.archives-ouvertes.fr/hal-00795549
DOI : 10.1016/j.geobios.2012.05.002

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Treacher Collins/Franceschetti syndrome (TCS; OMIM 154500) is a disorder of craniofacial development belonging to the heterogeneous group of mandibulofacial dysostoses. TCS is classically characterized by bilateral mandibular and malar hypoplasia, downward-slanting palpebral fissures, and microtia. To date, three genes have been identified in TCS:,TCOF1, POLR1D, and POLR1C. We report a clinical and extensive molecular study, including TCOF1, POLR1D, POLR1C, and EFTUD2 genes, in a series of 146 patients with TCS. Phenotype-genotype correlations were investigated for 19 clinical features, between TCOF1 and POLR1D, and the type of mutation or its localization in the TCOF1 gene. We identified 92/146 patients (63%) with a molecular anomaly within TCOF1, 9/146 (6%) within POLR1D, and none within POLR1C. Among the atypical negative patients (with intellectual disability and/or microcephaly), we identified four patients carrying a mutation in EFTUD2 and two patients with 5q32 deletion encompassing TCOF1 and CAMK2A in particular. Congenital cardiac defects occurred more frequently among patients with TCOF1 mutation (7/92, 8%) than reported in the literature. Even though TCOF1 and POLR1D were associated with extreme clinical variability, we found no phenotype-genotype correlation. In cases with a typical phenotype of TCS, 6/146 (4%) remained with an unidentified molecular defect.
ISSN: 1098-3600

hal-01134364
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134364
DOI : 10.1038/gim.2015.29
PUBMED : 25790162

Éditeur(s) : Oxford university press
Résumé : The results of a survey on fishers' perceptions of recent changes in the eastern English Channel ecosystem carried out in 2006 were compared with fishery and bottom-trawl survey data. A hypothesis-testing framework was used, testing the null hypothesis that fishers' statements were true, which permitted evaluation of both agreement and disagreement. Overall good agreement between fishers' statements and scientific data was found, and both sources suggested that the fish community in the Channel is undergoing large changes, among which are decreases in some commercially important species; in addition, a number of human pressures impact the ecosystem. Fishers had an accurate perception of changes and their time-frames, but not necessarily of their causes. They had a greater power than survey data to detect recent changes, showing that fishers' perceptions have great potential as early warning signals.
ICES Journal of Marine Science (1054-3139) (Oxford university press), 2008-09 , Vol. 65 , N. 6 , P. 1057-1068

Droits : 2008 International Council for the Exploration of the Sea. Published by Oxford Journals.
http://archimer.ifremer.fr/doc/2008/publication-4474.pdf
DOI:10.1093/icesjms/fsn062
http://archimer.ifremer.fr/doc/00000/4474/

Éditeur(s) : Inter-Research
Résumé : The spatial structure of demersal fish assemblages on the continental shelf of the NW Mediterranean Sea was examined on a large scale between the Straits of Gibraltar and the Gulf of Lions. In contrast to its predominant role in the spatial distribution of species composition, described worldwide, it seems depth has only a limited effect on the distribution patterns of the total abundance and diversity of demersal fishes. In addition, evidence is provided for the division of the whole study area into 3 geographical fish assemblages. The influence of Atlantic inputs and the semi-permanent Almena-Oran hydrographic front play a key role in defining the Alboran Sea as a specific fish fauna area. Moreover, the clear differentiation between 2 distinct assemblages in the Gulf of Lions and the Catalan Sea could be partly linked to the North Balearic front. These results contribute to the current debate on the definition of spatial units for the purpose of demersal fisheries management. They also stress the complexity of developing an ecosystem approach which deals simultaneously with species composition and biodiversity aspects of ecosystems management.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2005-08 , Vol. 297 , P. 245-257

Droits : Inter-Research 2005
http://archimer.ifremer.fr/doc/2005/publication-3623.pdf
DOI:10.3354/meps297245
http://archimer.ifremer.fr/doc/00000/3623/

Résumé : In the French West Indies islands, the transfer of chlordecone (kepone) from treated grounds towards the marine environment has been proved since the beginning of 2000s. In 2008, a maximal residue limit (MRL) was set at 20 µg / kg wet weight in fish and seafood, and therefore intensified the concern about the risks of high human exposure to the pesticide due to the consumption of contaminated marine products. To answer this concern, several sampling cruises were carried by public authorities and by Ifremer in order to analyze the contamination of the fish fauna around the Guadeloupe island. The data collected within these surveys improved our knowledge on the characteristics of the contamination of fish fauna and allowed to assess the distribution of this contamination in relation with optional geographical plans of the marine area around the Guadeloupe island. Further, this study was completed by an assessment of the fishery activity in areas which are the more exposed to the chlordecone contamination, taking into account data from a fishery observatory which has been set up in the archipelago since 2007. The results allow to precise two main characteristics of distribution of the contamination: its spatial and specific dimensions. About the spatial aspect, contamination of the fish fauna is centred on marine areas which are closely downstream contaminated watersheds. Concerning the marine fauna, two species groups are particularly exposed: the very coastal ones, particularly those living at or close to the mouth of rivers, and crustaceans wherever they live. Among fishes, the most contaminated species belong to many various groups which are present in the very coastal belt, more or less regularly. Lastly, this study provided orders of magnitude on the relative part of the fishery activity around the archipelagos for which the contamination is of great concern.
Aux Antilles, l’existence d’un transfert de la molécule de chlordécone des sols traités vers le milieu marin est avérée depuis le début des années 2000. L’établissement d’une limite maximale de résidus à 20 µg/kg pf pour tous les produits marins en 2008 y a intensifié la préoccupation vis-à-vis des risques d’exposition des populations humaines par les produits de la pêche. Pour répondre à cette préoccupation, depuis 2008, plusieurs campagnes d’échantillonnage ont été réalisées par les services de l’Etat (DAAF) et par l’Ifremer pour analyser la contamination de la faune halieutique autour de la Guadeloupe. Les données collectées de 2008 à 2011 par ces plans d’observation ont été utilisées pour actualiser les connaissances sur les caractéristiques de la contamination de la faune halieutique autour de la Guadeloupe, et analyser cette distribution en référence à différents schémas de segmentation du domaine marin. L’étude a été complétée par une analyse de l’activité halieutique dans les secteurs les plus sensibles à la contamination, à partir des données du système d’informations halieutiques déployé dans l’archipel depuis 2007. L’analyse a permis de préciser deux traits majeurs de cette distribution : sa dimension spatiale et son caractère spécifique. Sur le plan spatial, la contamination de la faune halieutique est centrée sur les espaces maritimes situées immédiatement en aval des bassins versants contenant des sols contaminés. Sur le plan faunistique, deux groupes apparaissent particulièrement sensibles, les espèces très côtières, en particulier celles fréquentant les embouchures des cours d’eau, et les crustacés, quelque soit leur milieu de vie. Chez les poissons, parmi les espèces contaminées, on trouve un large cortège d’espèces fréquentant plus ou moins régulièrement la bande littorale. Enfin, l’étude a permis de fournir des ordres de grandeur sur la part de l’activité halieutique de l’archipel directement concernée par cette pollution.

Droits : 2013 Ifremer
http://archimer.ifremer.fr/doc/00136/24762/22840.pdf
http://archimer.ifremer.fr/doc/00136/24762/

Droits : 2010 Ifremer/Observatoire du Patrimoine Naturel de Bretagne
http://archimer.ifremer.fr/doc/00026/13737/10865.pdf
http://archimer.ifremer.fr/doc/00026/13737/

Éditeur(s) : Elsevier
Résumé : The present work is based on a set of bottom trawl surveys performed in the Gulf of Lions between 1983 and 1992. A new method which couples the STATIS multitable approach with the logic of correspondence analysis (CoA) is proposed to study the stability of spatial organization of demersal assemblages in terms of species composition. This CoA version of STATIS has provided a clear representation of the stable part of the spatial structure of the assemblages. In addition, it gave an insight into the interannual variations of the distribution of each population around the reference structure. Our results showed that the demersal assemblages of the Gulf of Lions exhibited strong spatial structuring, mainly orientated along a bathymetric gradient. This gradient is structured around three major regions: the coast, the continental shelf and the continental slope. Despite sampling variations that occurred during the course of the study, the analysis showed a high degree of reproducibility for this spatial pattern. With the exception of Mullus surmuletus, the species considered in this investigation exhibit limited variations in their spatial distribution. Finally, in the absence of log-books covering the activities of commercial fishing vessels, these findings constitute a base of reference for the analysis of the dynamics of fishing fleets exploiting the demersal resources of the Gulf of Lions.
Ce travail porte sur une série de campagnes de chalutage de fond réalisé dans le golfe du Lion entre 1983 et 1992. Une nouvelle méthode fondée sur le couplage de la technique multitableaux STATIS et de l'analyse factorielle des correspondances (AFC) est proposée afin d'étudier l'organisation spatio-temporelle des assemblages démersaux, poissons et quelques céphalopodes, en terme de composition spécifique. Cette version AFC de STATIS a fourni une représentation claire de la part stable de l'organisation spatiale des assemblages. De plus, elle nous a permis d'appréhender les variations interannuelles de la distribution de chaque population autour de la structure de référence. Nos résultats montrent que les assemblages démersaux du golfe du Lion présentent une forte structuration spatiale, principalement orientée selon un gradient bathymétrique. Ce dernier est structuré en trois grandes régions: la côte, le plateau continental et le talus continental. En dépit des variations d'échantillonnage survenues au cours de la période d'étude, l'analyse a mis en évidence une forte reproductibilité de ce schéma d'organisation. A l'exception de Mullus surmuletus, les espèces considérées dans ce travail présentent des variations limitées de leur distribution spatiale. Enfin, en l'absence de livres de bord sur l'activité des navires professionnels, ces résultats constituent une base de référence pour l'analyse de la dynamique des flottilles exploitant les ressources démersales dans le golfe du Lion.
Aquatic Living Resources (Elsevier), 1998-03 , Vol. 11 , N. 2 , P. 75-85

Droits : 1998 Published by Elsevier SAS
http://archimer.ifremer.fr/doc/1998/publication-875.pdf
DOI:10.1016/S0990-7440(98)80063-6
http://archimer.ifremer.fr/doc/00000/875/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Background & Aims: The severity of liver diseases is exacerbated by the death of hepatocytes, which can be induced by the sensing of pathogen associated molecular patterns (PAMPs) derived from the gut microbiota. The molecular mechanisms regulating these cell death pathways are poorly documented. In this study, we investigated the role of the receptor interacting protein kinase 1 (RIPK1), a protein known to regulate cell fate decisions, in the death of hepatocytes using two in vivo models of PAMP-induced hepatitis. Methods: Hepatitis was induced in mice by independent injections of two different bacterial PAMPs: lipopolysaccharide (LPS) and unmethylated CpG oligodeoxynucleotide (CpG-DNA) motifs. The role of RIPK1 was evaluated by using mice specifically lacking RIPK1 in liver parenchymal cells (Ripk1(LPC-KO)). Administration of liposome-encapsulated clodronate served to investigate the role of Kupffer cells in the establishment of the disease. Etanercept, a tumor necrosis factor (TNF)-decoy receptor, was used to study the contribution of TNF-alpha during LPS-mediated liver injury. Results: Whereas RIPK1 deficiency in liver parenchymal cells did not trigger basal hepatolysis, it greatly sensitized hepatocytes to apoptosis and liver damage following a single injection of LPS or CpG-DNA. Importantly, hepatocyte death was prevented by previous macrophage depletion or by TNF inhibition. Conclusions: Our data highlight the pivotal function of RIPK1 in maintaining liver homeostasis in conditions of macrophage-induced TNF burst in response to PAMPs sensing. Lay summary: Excessive death of hepatocytes is a characteristic of liver injury. A new programmed cell death pathway has been described involving upstream death ligands such as TNF and downstream kinases such as RIPK1. Here, we show that in the presence of LPS liver induced hepatic injury was due to secretion of TNF by liver macrophages, and that RIPK1 acts as a powerful protector of hepatocyte death. This newly identified pathway in the liver may be helpful in the management of patients to predict their risk of developing acute liver failure. (C) 2017 European Association for the Study of the Liver. Published by Elsevier B.V. All rights reserved.
ISSN: 0168-8278

hal-01532060
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01532060
DOI : 10.1016/j.jhep.2017.01.005
PUBMED : 28088582

Résumé : La chlordécone est un insecticide organochloré qui a été utilisé aux Antilles de 1972 à 1993 afin de combattre un charançon s’attaquant aux racines des bananiers. Très persistant dans le milieu, la molécule est véhiculée des terres contaminées vers les systèmes aquatiques par le biais des matières particulaires fines, contaminant ainsi le milieu marin côtier. L’objectif de l'étude était de caractériser le devenir de la chlordécone dans les réseaux trophiques de la macrofaune côtière. Il s'agissait en particulier de tenter d’identifier ses voies d’entrée à partir des apports terrigènes et sa propagation au sein de ces réseaux. Le modèle d'étude est une baie de la Martinique, avec les herbiers à phanérogamme comme système de production primaire. Les résultats obtenus ont montré que les apports terrigènes ont une influence sur les niveaux de contamination de la faune marine, les individus d’une même espèce et aux caractéristiques comparables apparaissant plus contaminés lorsqu’ils sont proches des exutoires des rivières que lorsqu’ils en sont plus éloignés. Cette contamination présente une bioamplification le long des réseaux trophiques, depuis les producteurs primaires jusqu’aux espèces de rang trophique élevé tels que les carnivores de deuxième ordre (facteur de bioamplification trophique estimé entre 1,4 et 1,9). Le lieu de vie et le mode d’alimentation ont ainsi été identifiés comme jouant une rôle important sur les niveaux de contamination. Des phénomènes de bioaccumulation ont été avérés chez deux espèces pour lesquelles le niveau de contamination par la chlordécone est élevé, Chloroscombrus chrysurus et Callinectes danae. Mais cette caractéristique ne s’applique pas à toutes les espèces étudiées. Une diminution des niveaux de contamination a même été observée au cours de la vie de la langouste blanche Panulirus argus. Elle est principalement attribuée à une migration de l’espèce vers le large entre les phases juvéniles et adultes. Le présent rapport apporte ainsi des connaissances nouvelles sur les modalité de transfert de la chlordécone en milieu marin, en particulier sur la capacité de transfert de la molécule dans les réseaux trophiques, sur la capacité des organismes à la bioaccumuler ainsi que sur l'influence du mode de vie et de l’alimentation des espèces sur leurs niveaux de contamination. Il met en évidence le rôle de l’écologie des espèces dans les niveaux de contamination. Malgré les progrès accomplis, ces résultats restent encore fragmentaires.

Droits : 2011 Ifremer
http://archimer.ifremer.fr/doc/00036/14684/11986.pdf
http://archimer.ifremer.fr/doc/00036/14684/

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
After the January 12, 2010, Haiti earthquake, we deployed a mainly offshore temporary network of seismologic stations around the damaged area. The distribution of the recorded aftershocks, together with morphotectonic observations and mainshock analysis, allow us to constrain a complex fault pattern in the area. Almost all of the aftershocks have a N‐S compressive mechanism, and not the expected left‐lateral strike‐slip mechanism. A first‐order slip model of the mainshock shows a N264°E north‐dipping plane, with a major left‐lateral component and a strong reverse component. As the aftershock distribution is sub‐parallel and close to the Enriquillo fault, we assume that although the cause of the catastrophe was not a rupture along the Enriquillo fault, this fault had an important role as a mechanical boundary. The azimuth of the focal planes of the aftershocks are parallel to the north‐dipping faults of the Transhaitian Belt, which suggests a triggering of failure on these discontinuities. In the western part, the aftershock distribution reflects the triggering of slip on similar faults, and/or, alternatively, of the south‐dipping faults, such the Trois‐Baies submarine fault. These observations are in agreement with a model of an oblique collision of an indenter of the oceanic crust of the Southern Peninsula and the sedimentary wedge of the Transhaitian Belt: the rupture occurred on a wrench fault at the rheologic boundary on top of the under‐thrusting rigid oceanic block, whereas the aftershocks were the result of the relaxation on the hanging wall along pre‐existing discontinuities in the frontal part of the Transhaitian Belt.
ISSN: 0094-8276

insu-00643489
https://hal-insu.archives-ouvertes.fr/insu-00643489
https://hal-insu.archives-ouvertes.fr/insu-00643489/document
https://hal-insu.archives-ouvertes.fr/insu-00643489/file/GRL-haiti.2011.pdf
DOI : 10.1029/2011GL049799

Éditeur(s) : Communication, ICES Conference and Meeting (CM), 2010, Nantes
Résumé : Chlordecone is a very persistent insecticide used in banana plantations of the French West Indies between 1972 and 1993. Chlordecone residues were found in inland water, in agricultural and freshwater products, and in marine organisms. This pollution has become of great concern in 2007. Therefore, a governmental action Plan was launched to better assess the pollution and to improve the consumer’s protection. Within this plan, 1048 samples from 69 different species of marine fishes and crustaceans were collected all around both the Guadeloupe and the Martinique Islands and analyzed. The results confirm the presence of chlordecone in marine organisms, with highly variable concentrations (from the detection limit to 1000 μg.kg-1). In 17.9 % of the samples, concentrations exceeded 20 μg.kg-1, the maximum acceptable level in fish according to the French regulation (Anon, 2008). Two main features of this contamination were characterized. 1) Because of the sedimentation of contaminated suspended soil particles, the sheltered bays are more exposed to chlordecone than the open coast where terrigenous flux are dispersed. 2) Species biology, particularly their lifestyle and diet, appear to influence contamination levels. Thus, the more contaminated species live in relation with sediment or are at high trophic level. These results have directly supported political decisions in order to prevent too high exposure of consumers to chlordecone. Fishing activities in sheltered bays have been forbidden for potentially highly contaminated species like benthic crustaceans and top predators. Further studies are under way to assess the importance of the trophic transport of chlordecone within the foodweb, and to evaluate the historical deposition of this insecticide in sediment and its further bioavailability.

Droits : 2010 ICES/CIEM ; Ifremer
http://archimer.ifremer.fr/doc/00014/12511/9361.pdf
http://archimer.ifremer.fr/doc/00014/12511/