Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The yeast Candida glabrata has become the second cause of systemic candidemia in humans. However, relatively few genome-wide studies have been conducted in this organism and our knowledge of its transcriptional regulatory network is quite limited. In the present work, we combined genome-wide chromatin immunoprecipitation (ChIP-seq), transcriptome analyses, and DNA binding motif predictions to describe the regulatory interactions of the seven Yap (Yeast AP1) transcription factors of C. glabrata. We described a transcriptional network containing 255 regulatory interactions and 309 potential target genes. We predicted with high confidence the preferred DNA binding sites for 5 of the 7 CgYaps and showed a strong conservation of the Yap DNA binding properties between S. cerevisiae and C. glabrata. We provided reliable functional annotation for 3 of the 7 Yaps and identified for Yap1 and Yap5 a core regulon which is conserved in S. cerevisiae, C. glabrata, and C. albicans. We uncovered new roles for CgYap7 in the regulation of iron-sulfur cluster biogenesis, for CgYap1 in the regulation of heme biosynthesis and for CgYap5 in the repression of GRX4 in response to iron starvation. These transcription factors define an interconnected transcriptional network at the crossroads between redox homeostasis, oxygen consumption, and iron metabolism.
ISSN: 1664-302X

Droits : http://creativecommons.org/licenses/by/
hal-01323791
http://hal.upmc.fr/hal-01323791
http://hal.upmc.fr/hal-01323791/document
http://hal.upmc.fr/hal-01323791/file/fmicb-07-00645.pdf
DOI : 10.3389/fmicb.2016.00645

Éditeur(s) : HAL CCSD Elsevier
Résumé : We have integrated the relatively unknown distal domains of the Lower Congo basin, where the main depocenters of the Congo submarine fan are located, with the better-constrained successions on the shelf and upper slope, through the analysis of thousands of km of 2D seismic reflection profiles off-shore the Congo-Angola passive margin. The basin architecture is depicted by two ca. 800-km-long regional cross sections through the northern (Congo) and southern (Angola) margin. A large unit deposited basinward of the Aptian salt limit is likely to be the abyssal-plain equivalent of the upper-Cretaceous carbonate shelf that characterized the first post-rift deposits in West-equatorial African margins. A latest-Turonian shelf-deepening event is recorded in the abyssal plain as a long period (Coniacian-Eocene) of condensed sedimentation and basin starvation. The onset of the giant Tertiary Congo deep-sea fan in early Oligocene following this event reactivates the abyssal plain as the main depocenter of the basin. The time-space partitioning of sedimentation within the deep-sea fan results from the interplay among increasing sediment supply, margin uplift, rise of the Angola salt ridge, and canyon incision throughout the Neogene. Oligocene-early Miocene turbidite sedimentation occurs mainly in NW-SE grabens and ponded inter-diapir basins on the southern margin (Angola). Seaward tilting of the margin and downslope salt withdrawal activates the up-building of the Angola escarpment, which leads to a northward (Congo) shift of the transfer zones during late Miocene. Around the Miocene-Pliocene boundary, the incision of the Congo submarine canyon confines the turbidite flows and drives a general basinward progradation of the submarine fan into the abyssal plain The slope deposition is dominated by fine-grained hemipelagic deposits ever since. Results from this work contribute to better understand the signature in the ultra-deep deposits of processes acting on the continental margin as well as the basin-wide sediment redistribution in areas of high river input.
ISSN: 0040-1951

hal-00424533
https://hal.archives-ouvertes.fr/hal-00424533
DOI : 10.1016/j.tecto.2008.04.009

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Cnidarian-dinoflagellate symbiosis disruption and subsequent bleaching are major concerns, especially regarding their ecological consequences on coral reefs and temperate coralligenous communities. Cnidarian bleaching is caused by a variety of environmental stressors, such as elevated seawater temperature associated with global climate change, and by pollutants, such as herbicides and metals. Several cellular events have been described to explain symbiosis dysfunction and bleaching. Excess or damaged Symbiodinium symbionts are removed through a variety of mechanisms, including exocytosis, apoptosis, necrosis and autophagy. However, few studies have compared in the same species the relative involvement of these mechanisms, according to the stress inducing the bleaching. In this study, we used two different treatments —temperature and menthol— to induce bleaching in the sea anemone Anemonia viridis. By monitoring the ultrastructural tissue modifications, in control specimens we observed a basal rate of in situ symbiont digestion —or symbiophagy— induced by starvation. Symbiophagy was strongly induced in menthol-treated specimens and was the main cellular process of bleaching, whereas apoptosis and necrosis predominated in hyperthermal-induced bleaching. These results suggested a host effect through autophagy in menthol-treated specimens. These observations also suggested that symbiont removal may result from reengagement of the phagosomal maturation process in the host. These overall data demonstrate that several Symbiodinium cell removal mechanisms coexist and that stressors can activate one or more of these pathways, depending on the stress type, intensity or duration.
ISSN: 0334-5114

hal-01546908
http://hal.upmc.fr/hal-01546908
DOI : 10.1007/s13199-016-0406-y

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In chemoautotrophic associations, sequence comparison of 16S rRNA has been the method of choice to study bacterial diversity in the context of host/symbiont coevolution. However, the relative low rate of evolution of 16S rRNA has been shown to result in a diminished capacity to discriminate between closely related bacterial strains or species. Within chemoautotrophic associations, as described in several studies, the use of other genetic markers may reveal previously unobserved strain diversity among gill endosymbionts. Herein, we conducted a survey of symbionts harbored by six species within the Lucinidae family using five genetic markers (dnaE, gyrB, aprA, cbbL genes and the 16S-23S internal transcribed spacer). Thus, within the already described SoLuc₁ bacterial species shared by six host species we observed an obvious bacterial strain diversity. This diversity is structured in function of the geographic location of the hosts and not in function of ecological parameters or host phylogeny. Interestingly at the local level (same seagrass bed environment), we observed an unexpected specificity in host species/bacterial strain association (i.e., all individuals of the same host species harbor the same symbiotic sequence type). This specificity of association implied that there was a control of symbiont strain acquisition by the host, which was confirmed by a cross-infection experiment of starved adults performed in our study. Based upon our results and other evidence from the literature, we hypothesize that this pattern may be due to a ``capture/escape'' type antagonist evolution of the two partners.
ISSN: 0025-3162

hal-01544753
https://hal.archives-ouvertes.fr/hal-01544753
DOI : 10.1007/s00227-016-2949-0

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
During ODP Leg 209, a magma-starved area of the Mid-Atlantic Ridge (MAR) was drilled in the vicinity of the Fifteen-Twenty Fracture Zone (FZ) that offsets one of the slowest portions of the spreading ridge. We present here the results of a bulk rock multi-elemental study of 27 peridotites drilled at Sites 1272 and 1274 (to the south and the north of the FZ, respectively). The peridotites comprise mainly of harzburgites with minor dunites. Clinopyroxene (Cpx), which is interstitial and interpreted as secondary, is observed in Site 1274 peridotites. Sites 1272 and 1274 peridotites have low Al2O3 contents (<= 1 anhydrous wt.%), high Mg# (>91.5), and bulk rock trace elements compositions mostly below 0.1 x primitive mantle (PM). These peridotites, and in particular Site 1272 peridotites, represent the most depleted peridotites yet sampled at a slow spreading ridge. Their compositions indicate high degrees of partial melting and melt extraction. A single open-system melting event (melting plus percolation of melts produced within upwelling mantle) can explain their highly depleted yet linear chondrite-normalized REE patterns, characterized by a steady depletion from HREE to LREE. Late melt-rock reactions and precipitation of Cpx explains the slightly less depleted compositions of Site 1274 peridotites. Hence, the differences in composition between Sites 1272 and 1274 peridotites do not provide evidence for regional variations in the degrees of partial melting from the south to the north of the FZ. The occurrence of highly refractory peridotites in the Fifteen-Twenty area suggests we sampled a more actively convecting mantle than generally supposed below slow spreading centers.
ISSN: 0012-821X

hal-00412001
https://hal.archives-ouvertes.fr/hal-00412001
DOI : 10.1016/j.epsl.2007.11.058

Éditeur(s) : HAL CCSD Elsevier
Résumé : Detailed sedimentological investigations on numerous outcrops and drill-core sections in the 2.1-Ga-old Franceville basin, Gabon, provide evidence for a large-scale injectite network. The injectites were formed by the injection of sands through a thickness of about 150 m of the FB1 Member, and now cover a minimum area of 70 km2 corresponding to the Bangombé plateau, but are also recognized close to Franceville 35 km farther south-east. The injectite lithology corresponds to a mud- or carbonate-supported sandstone characterized by a loose and uncompacted fabric contrasting with the host-rock. Because the injectites are often parallel to subparallel to the stratification, they were misinterpreted as depositional beds by previous authors. At outcrop, the injectite bodies exhibit sill, dyke, wing and protrusive geometries emplaced during early burial within poorly compacted material, with partial wall erosion and dissociation. The source of the sand material is attributed to a channel-levee turbidite depositional system located in the lower part of the FB1 Member. These deposits were buried by a thick biochemical muddy cap deposited during a starvation phase, which increased the seal capacity of the system. This type of architecture has a high potential to develop compaction disequilibrium during burial. Moreover, in the case of the Francevillian injectites, the abundance of microbial organic matter favoured early methane degassing and lateral charging of the sand reservoir. The overpressure in the channels was periodically released during early burial, through the effect of rapid sedimentary and tectonic loading, and possible seismic activity. The fluidized sand was injected according to a symmetrical wing pattern. Thus, the injected masses caused a local decrease in the grade of the lateritic manganese ore deposit of the Bangombé plateau.
ISSN: 0301-9268

hal-01667217
https://hal.archives-ouvertes.fr/hal-01667217
DOI : 10.1016/j.precamres.2017.09.022