Éditeur(s) : Agrocampus Ouest
Résumé : The origin of fish stocks variability is a key question in fisheries science. The exploitation indeed has an important effect in terms of biomass reduction, but environmental forcing is of central interest as it affects numerous key biological processes. Recent theoretical results have shown that the nature of the environmental fluctuations, the environmental noise, has important ecological consequences on populations and particularly on their fluctuations. In addition the effects of exploitation, that are not a simple removal of individuals but also profoundly modifies the demography, the structure and the trophic interactions of fish stocks, can interact with environmental effects. Through an extensive analysis of time series we aim at understanding the effects of environmental noise on fish stocks variability, according to their biological characteristics (life-history traits) and their exploitation. A technique of time series comparison allows to propose that the fluctuations of Atlantic large pelagics are inherited from the interaction between environmental effects, endogenous dynamics and exploitation. We then show that the colour of environmental noise affects the variability of time series, its effects depending on the life-history traits of species. Finally, preliminary results on bentho-demersal and pelagic stocks from the North Atlantic suggest that the exploitation increases the sensitivity of fish stocks to the colour of environmental noise and affects their variability, according to their life-history traits.
L'origine de la variabilité des stocks de pêche est une question centrale en halieutique. Si l'exploitation tient un rôle important dans la réduction de biomasse, le forçage environnemental affecte de nombreux processus biologiques clés. Des résultats théoriques récents ont montré que la nature des fluctuations environnementales, la couleur du bruit environnemental, avait des implications écologiques importantes sur les populations et notamment sur leurs fluctuations. De plus, les effets environnementaux peuvent agir en interaction avec l'exploitation qui ne consiste pas en un simple prélèvement d'individus, mais qui modifie profondément la démographie, la structure et les interactions trophiques des stocks. Au travers de l'analyse extensive de séries temporelles, on essaye ici de comprendre les effets de la couleur du bruit environnemental sur la variabilité des stocks en fonction de leurs caractéristiques biologiques (traits d'histoire de vie) et de leur état d'exploitation. Le développement d'une technique de comparaison des séries temporelles permet de proposer que les fluctuations des grands pélagiques de l'Atlantique sont héritées de l'interaction entre effets environnementaux, dynamique interne et dynamique de l'exploitation. On montre ensuite que la couleur du bruit environnemental affecte la variabilité des séries temporelles, mais que son effet dépend des traits d'histoire de vie des espèces. Enfin, des résultats préliminaires sur les stocks bentho-démersaux et pélagiques de l'Atlantique Nord, suggèrent que l'exploitation augmente la sensibilité des stocks à la couleur du bruit environnemental et affecte leur variabilité en fonction de leurs traits d'histoire de vie.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6596.pdf
http://archimer.ifremer.fr/doc/00000/6596/

Éditeur(s) : HAL CCSD
Résumé : The mosquito species Aedes (Stegomyia) aegypti (Linnaeus 1762) was introduced into the Americas some 400 years ago from the African continent. Currently, this species is the primary agent behind dengue and chikungunya outbreaks in the pan-tropical area and its widespread distribution has likely played an important role in the recent expansion of the Zika virus. The biology of Ae. (Stg.) aegypti is particularly well known, which is not the case for its ecology. By adopting a cross-disciplinary approach I attempted to understand the relative contribution of biotic and abiotic factors as well as some evolutionary processes in the distribution of this species at the local and regional scales in French Guiana.Initially, I was interested in revising the core knowledge concerning the diversity of mosquitoes in French Guiana. By combining traditional and molecular taxonomy, this step allowed my colleagues and I to discover several new species and to create the appropriate tools to manage this type of entomological data.Secondly, we studied the spatio-temporal structure of resident aquatic macroinvertebrate communities in urban areas. This highlighted the existence of antagonistic and mutualistic interactions. In particular, the native mosquito Limatus durhamii Theobald 1901 appears to prevent the sustainable establishment of Ae. (Stg.) aegypti in slightly urbanized environments via a mechanism of competitive exclusion.
Le moustique Aedes (Stegomyia) aegypti (Linnaeus 1762) a été introduit dans les Amériques depuis le continent africain il y a environ 400 ans. Actuellement, cette espèce est la principale responsable des épidémies de dengue et de chikungunya dans la zone pantropicale et sa large répartition a très probablement joué un rôle important dans l’expansion récente du virus Zika. La biologie d’Ae. (Stg.) aegypti est particulièrement bien connue, ce qui n’est pas le cas de son écologie, en particulier de ses interactions avec les communautés résidentes. En adoptant une démarche pluridisciplinaire je me suis intéressé à la contribution relative des facteurs biotiques et abiotiques ainsi que de certains processus évolutifs dans la distribution de cette espèce à différentes échelles en Guyane française.Dans un premier temps j’ai participé à la révision des connaissances fondamentales sur la diversité des moustiques de Guyane. En alliant la taxonomie classique et moléculaire, cette étape a permis de découvrir plusieurs nouvelles espèces et de mettre en place des outils adaptés à la gestion de ce type de données, notamment pour une utilisation future.Dans un second temps la structuration spatio-temporelle des communautés résidentes de macro-invertébrés aquatiques a été étudiée en milieu urbain. Cela a permis de mettre en évidence l’existence d’interactions antagonistes et mutualistes avec les taxons des communautés résidentes. En particulier, le moustique autochtone Limatus durhamii Theobald 1901 semble empêcher l’établissement durable d’Ae. (Stg.) aegypti dans les milieux faiblement urbanisés via un mécanisme d’exclusion compétitive.
https://tel.archives-ouvertes.fr/tel-01405425

NNT : 2016YANE0001
tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425/document
https://tel.archives-ouvertes.fr/tel-01405425/file/These_Def_Talaga.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study constitutes one of the few works conducted on the colonization of recent lava flows by fish communities in coral reef environment. It attempted to describe the mechanisms of colonization and environmental variables infuencing the structure of communities on the lava flows of the Piton de la Fournaise volcano at Reunion Island. It also proposed some hypotheses on the mechanisms of selection and speciation of endemic species of thesouthwestern Indian Ocean region, particularly diversified on the most recent lava flows of the Piton de la Fournaise, and provided a model of distribution of environmental and fish assemblage variables in four homogeneous patterns of colonization (landscapes) retained within the study area. The results showed fish community structure strongly related to measured environmental variables, of which depth, width of the island shelf, age of the lava flow and distance to the most recent lava flow were the most influential. It also appeared that the maximum endemic species richness was measured on the shallower stations, with narrow insular shelf, located on recent lava flows, near the lava flow from the eruption of 2007 (latest volcanic event). These characteristics define a harsh environment, to which endemic species seem well-adapted due in particular to their strong demographic and dietary flexibility. Finally, the patterns of colonization were characterized by significantly different environmental variables. The four homogeneous areas, defined by two geomorphological features, basalt blocks and drop-offs, nested within two locations, inside and outside the volcanic enclosure (current caldera), hosted fish communities whose dominant diets mainly depend on the nature, the abundance and the accessibility of available food resources. Overall, the study highlights that during early stages of ecological succession, site selection by fish communities is highly dependent on environmental constraints, specially of volcanic origin, but the physical habitat selection (geomorphology, substrate rugosity, percentage of soft substrate) seems to have littleimportance, while at least on the trophic structure and the distribution of endemic species.
ISSN: 0022-0981

hal-01253768
https://hal.archives-ouvertes.fr/hal-01253768
https://hal.archives-ouvertes.fr/hal-01253768/document
https://hal.archives-ouvertes.fr/hal-01253768/file/Pinault%20et%20al.%20-%202014%20-%20Fish%20community%20structure%20in%20relation%20to%20environmen_hal.pdf
DOI : 10.1016/j.jembe.2014.06.005

Éditeur(s) : Gauthier-Villars
Résumé : Fish communities from two lagoon ecosystems, Ria Formosa (Portugal) and Grand Cul-de-Sac Marin (Guadeloupe), show interesting similarities of spatial and temporal organization. On the temporal scale, three community changes are observed in both systems, corresponding to massive arrivals and/or departures of migratory species. However, these migrations are more conspicuous in the Ria Formosa than in the Grand Cul-de-Sac Marin. On a spatial scale, the community structure is also largely determined by migratory species, whose abundance is a factor of homogenization. This is clearly observed in Ria Formosa, where the lagoon selection applies on a regional scale. Conversely, the community of sedentary fish identifies remarkable stations affected by chronic aggressions such as tourism or pollution. An explicative analysis, comprising a discriminant analysis and multiple regressions was realized on the data collected in the Grand Cul-de-Sac Marin. This analysis made it possible to determine the important environmental descriptors in the two complementary processes involved in recruitment: migrant availability, which determines the temporal organization of the fish assemblage. These migrations are explained by water temperature and salinity, two descriptors controlled by climatic conditions; the settlement process, which determines the spatial organization of the fish assemblage. This is explained by habitat descriptors such as visibility and turtlegrass blade length, or trophic descriptors, such as primary production, zooplankton density or nitrate concentration.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 3 , P. 291-301

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21056/18682.pdf
http://archimer.ifremer.fr/doc/00099/21056/