Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The Ryukyu subduction is known to generate very few earthquakes in its central segment contrarily to its two extremities. We focus in this study on the southernmost part of the Ryukyu subduction zone offshore east Taiwan. Our first task was to build a homogeneous earthquake catalogue for the period 1900–2007. The new catalogue provides homogenized M′W magnitudes and shows that several M′W≥ 7.0 earthquakes occurred offshore Hualien and Suao cities. We then focused on the 1920 June 5 earthquake (reported surface wave magnitude 8.1) previously located beneath the accretionary prism. The revised moment magnitude has been estimated in our catalogue at 7.7 ± 0.2. It is the biggest earthquake ever recorded in the Taiwan area but the fault that has produced this earthquake has not yet been identified with confidence. We relocated this event using regional phases (seismological bulletins archived at the Central Weather Bureau of Taiwan) about 50 km NNE and shallower of its former location, that is, within the Ryukyu Arc basement. According to earthquake bulletin information, revised magnitude, new hypocentral determination and known regional faults, we propose four potential active faults as candidates for the slip associated to this event: (1) the interplate seismogenic zone (ISZ), (2) an out-of-sequence thrust cutting through the forearc and branching on the ISZ, (3) a NS strike-slip fault cutting through the Ryukyu arc and (4) a N–S, westward dipping thrust fault, affecting the Philippine Sea Plate east of the Luzon Arc. The best compromise is to consider a rupture along the ISZ with a shallow nucleation possibly along a splay-fault followed by a downward and lateral propagation of the rupture that would explain the lack of significant seafloor motion and subsequent tsunami. We also estimate the maximum seismic coupling of the ISZ in the region east of Taiwan to about 0.4. In parallel, the evidences of aseismic slip occurring along the ISZ allow us to conclude that this region should only be affected by M < 8 earthquakes.
ISSN: 0956-540X

hal-00545459
https://hal.archives-ouvertes.fr/hal-00545459
https://hal.archives-ouvertes.fr/hal-00545459/document
https://hal.archives-ouvertes.fr/hal-00545459/file/theunisseGJI2010.pdf
DOI : 10.1111/j.1365-246X.2010.04813.x

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The Eastern Rift System (ERS) of northern Tanzania and southern Kenya, where a cratonic lithosphere is in the early stages of rifting, offers an ideal venue for investigating the roles of magma and other fluids in such an environment. To illuminate these roles, we jointly invert arrival times of locally recorded P and S body waves, phase delays of ambient noise generated Rayleigh waves and Bouguer anomalies from gravity observations to generate a 3-D image of P and S wave speeds in the upper 25 km of the crust. While joint inversion of gravity and arrival times requires a relationship between density and wave speeds, the improvement in resolution obtained by the combination of these disparate data sets serves to further constrain models, and reduce uncertainties. The most significant features in the 3-D model are (1) P and S wave speeds that are 10–15 per cent lower beneath the rift zone than in the surrounding regions, (2) a relatively high wave speed tabular feature located along the western edge of the Natron and Manyara rifts, and (3) low (∼1.71) values of Vp/Vs throughout the upper crust, with the lowest ratios along the boundaries of the rift zones. The low P and S wave speeds at mid-crustal levels beneath the rift valley are an expected consequence of active volcanism, and the tabular, high-wave speed feature is interpreted to be an uplifted footwall at the western edge of the rift. Given the high levels of CO2 outgassing observed at the surface along border fault zones, and the sensitivity of Vp/Vs to pore-fluid compressibility, we infer that the low Vp/Vs values in and around the rift zone are caused by the volcanic plumbing in the upper crust being suffused by a gaseous CO2 froth on top of a deeper, crystalline mush. The repository for molten rock is likely located in the lower crust and upper mantle, where the Vp/Vs ratios are significantly higher.
ISSN: 0956-540X

hal-01622055
https://hal.archives-ouvertes.fr/hal-01622055
https://hal.archives-ouvertes.fr/hal-01622055/document
https://hal.archives-ouvertes.fr/hal-01622055/file/roeckerGJI2017.pdf
DOI : 10.1093/gji/ggx220

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
OBJECTIVES: Tracheobronchial stenosis (TBS) is noted in 12-23% of patients with granulomatosis with polyangiitis (GPA), and includes subglottic stenosis and bronchial stenosis. We aimed to analyse the endoscopic management of TBS in GPA and to identify factors associated with the efficacy of endoscopic interventions. METHODS: We conducted a French nationwide retrospective study that included 47 patients with GPA-related TBS. RESULTS: Compared with patients without TBS, those with TBS were younger, more frequently female and had less frequent kidney, ocular and gastrointestinal involvement and mononeuritis multiplex. Endoscopic procedures included 137 tracheal and 50 bronchial interventions, mainly endoscopic dilatation, local steroid injection and conservative laser surgery, and less frequently stenting. After the first endoscopic procedure, the cumulative incidence of endoscopic treatment failure was 49% at 1 year, 70% at 2 years and 80% at 5 years. Factors significantly associated with a higher cumulative incidence of treatment failure were a shorter time from GPA diagnosis to endoscopic procedure [hazard ratio (HR) 1.08 (95% CI 1.01, 1.14); P = 0.01] and a bronchial stenosis [HR 1.96 (95% CI 1.28, 3.00); P = 0.002]. A prednisone dose ≥30 mg/day at the time of the procedure was associated with a lower cumulative incidence of treatment failure [HR 0.53 (95% CI 0.31, 0.89); P = 0.02]. CONCLUSION: TBS represents severe and refractory manifestations with a high rate of restenosis. High-dose systemic CSs at the time of the procedure and increased time from GPA diagnosis to bronchoscopic intervention are associated with a better event-free survival. In contrast, bronchial stenoses are associated with a higher rate of restenosis than subglottic stenosis.
ISSN: 1462-0324

hal-01155105
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01155105
DOI : 10.1093/rheumatology/kev129
PUBMED : 26001634

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Deciphering the evolutionary processes driving nucleotide variation in multiallelic genes is limited by the number of genetic systems in which such genes occur. The complementary sex determiner (csd) gene in the honey bee Apis mellifera is an informative example for studying allelic diversity and the underlying evolutionary forces in a well-described model of balancing selection. Acting as the primary signal of sex determination, diploid individuals heterozygous for csd develop into females, whereas csd homozygotes are diploid males that have zero fitness. Examining 77 of the functional heterozygous csd allele pairs, we established a combinatorical criteria that provide insights into the minimum number of amino acid differences among those pairs. Given a data set of 244 csd sequences, we show that the total number of csd alleles found in A. mellifera ranges from 53 (locally) to 87 (worldwide), which is much higher than was previously reported (20). Using a coupon-collector model, we extrapolate the presence of in total 116-145 csd alleles worldwide. The hypervariable region (HVR) is of particular importance in determining csd allele specificity, and we provide for this region evidence of high evolutionary rate for length differences exceeding those of microsatellites. The proportion of amino acids driven by positive selection and the rate of nonsynonymous substitutions in the HVR-flanking regions reach values close to 1 but differ with respect to the HVR length. Using a model of csd coalescence, we identified the high originating rate of csd specificities as a major evolutionary force, leading to an origin of a novel csd allele every 400,000 years. The csd polymorphism frequencies in natural populations indicate an excess of new mutations, whereas signs of ancestral transspecies polymorphism can still be detected. This study provides a comprehensive view of the enormous diversity and the evolutionary forces shaping a multiallelic gene.
ISSN: 0737-4038

hal-01544758
https://hal.archives-ouvertes.fr/hal-01544758
DOI : 10.1093/molbev/mst207

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Fungi are major contributors to the opportunistic infections that affect patients with HIV/AIDS. Systemic infections are mainly with Pneumocystis jirovecii (pneumocystosis), Cryptococcus neoformans (cryptococcosis), Histoplasma capsulatum (histoplasmosis), and Talaromyces (Penicillium) marneffei (talaromycosis). The incidence of systemic fungal infections has decreased in people with HIV in high-income countries because of the widespread availability of antiretroviral drugs and early testing for HIV. However, in many areas with high HIV prevalence, patients present to care with advanced HIV infection and with a low CD4 cell count or represent with persistent low CD4 cell counts because of poor adherence, resistance to antiretroviral drugs, or both. Affordable, rapid point-of-care diagnostic tests (as have been developed for cryptococcosis) are urgently needed for pneumocystosis, talaromycosis, and histoplasmosis. Additionally, antifungal drugs, including amphotericin B, liposomal amphotericin B, and flucytosine, need to be much more widely available. Such measures, together with continued international efforts in education and training in the management of fungal disease, have the potential to improve patient outcomes substantially.
ISSN: 1473-3099

inserm-01574426
http://www.hal.inserm.fr/inserm-01574426
http://www.hal.inserm.fr/inserm-01574426/document
http://www.hal.inserm.fr/inserm-01574426/file/2017%2C%20Limper%20-%20Fungal%20infections%20in%20HIV%20AIDS.pdf
DOI : 10.1016/S1473-3099(17)30303-1

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Ash flow tuffs, or ignimbrites have been recently proposed to be a good material for palaeointensity determination. In this paper, we present a multidisciplinary study, combining geochronology, petrology, rock magnetism and palaeomagnetism, carried out on Oligocene to Early Miocene ignimbrites and related flows from the southern part of the Sierra Madre Occidental. Two new 40Ar/39Ar ages were determined for ignimbrites; 20.4 ± 0.2 Ma (the youngest age obtained so far in this area) and 29.2 ± 0.5 Ma. Density measurements, as a proxy for welding, proved to be extremely useful to estimate the emplacement temperature and the origin of the magnetizations carried by the ignimbrites. After alternating field and thermal demagnetizations, the mean palaeomagnetic pole (Lat = 66.8°N; Long = 180.5°E; Kappa = 142; A95 = 6.3°), calculated for the period 28-31 Ma, is in close agreement with our only Miocene determination. Comparison with the North America Synthetic Apparent Polar Path indicates a net counter-clockwise vertical axis rotation of about 10 ± 4° compared to stable North America, which occurred likely during the last extensional episode in the Late Miocene (ca. 12-9 Ma). Palaeointensity estimates, obtained with the Thellier-Coe method, are mainly questionable and should not be used for global interpretation. Therefore, these ignimbrites are not a viable material for reliable palaeointensity determinations.
ISSN: 0956-540X

hal-00854457
https://hal.archives-ouvertes.fr/hal-00854457
DOI : 10.1093/gji/ggt079

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Adverse pregnancy outcomes entail a large health burden for the mother and offspring; a part of it might be avoided by better understanding the role of environmental factors in their etiology. Our aims were to review the assessment tools to characterize fecundity troubles and pregnancy-related outcomes in human populations and their sensitivity to environmental factors. For each outcome, we reviewed the possible study designs, main sources of bias, and their suggested cures. In terms of study design, for most pregnancy outcomes, cohorts with recruitment early during or even before pregnancy allow efficient characterization of pregnancy-related events, time-varying confounders, and in utero exposures that may impact birth outcomes and child health. Studies on congenital anomalies require specific designs, assessment of anomalies in medical pregnancy terminations, and, for congenital anomalies diagnosed postnatally, follow-up during several months after birth. Statistical analyses should take into account environmental exposures during the relevant time windows; survival models are an appropriate approach for fecundity, fetal loss, and gestational duration/preterm delivery. Analysis of gestational duration could distinguish pregnancies according to delivery induction (and possibly pregnancy-related conditions). In conclusion, careful design and analysis are required to better characterize environmental effects on human reproduction.
ISSN: 0193-936X

hal-01002724
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01002724
DOI : 10.1093/epirev/mxt011
PUBMED : 24363355

Éditeur(s) : HAL CCSD Wiley
Résumé : Sodium, an element which is needed by animals but often toxic in high concentrations to plants, may be deficient and limit animal abundance in inland continental regions, but may be overabundant and limit plant productivity in coastal regions. Here we present data from 50 independent plots (including leaf data from more than 2480 individual trees) showing that leaves in the Amazon basin uptake high amounts of sodium (Na) in a manner more similar to the essential cation potassium (K) than to the toxic cation aluminium (Al). Leaf Na increases linearly with soil Na concentrations, and there is no apparent mechanism for selective exclusion of Na in comparison to K, a key attribute of halophytes. This indicates that the Amazon basin is broadly non-halophytic and increased sodium concentrations in non-halophyte plants often decrease plant productivity. Total Na concentrations are approximate to 10 times higher in coastal regions than inland regions. Such concentration gradients in nutrients may have been reduced in the past because large animals that were abundant in the Pleistocene have been hypothesized to play a large role in reducing nutrient concentration gradients at continental scales. We use a diffusion model and a Na loss rate based on empirical data to estimate that large animals may have moved significant quantities of Na inland away from coastal regions in the Amazon Basin. Therefore, our simple model suggests that large animals may play an important, yet diminishing, role in maintaining the sodium balance of the planet.
ISSN: 0906-7590

hal-01531615
https://hal.archives-ouvertes.fr/hal-01531615
PRODINRA : 349612
DOI : 10.1111/ecog.01589

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Two in situ concrete/claystone interfaces were sampled at the laboratory level in the Andra Meuse/Haute Marne (France) Underground Research Laboratory (URL) in order to study five years of interactions between Callovian-Oxfordian (COx) claystone and two cementitious materials (concrete bottom slab and shotcrete on the walls of the main gallery), with a specific focus on sulfur. Combined mineralogical, chemical and sulfur isotopic investigations were carried out to define the degree of the perturbation of the sulfur system in the claystone and in both the cementitious materials. At both interfaces, results show that the main perturbation on the claystone side is the formation of scarce μm-sized gypsum, the sulfur content of which is essentially derived from pyrite oxidation. The distribution of gypsum is highly correlated with the fissure network of the damaged zone due to excavation of the gallery. Its presence is also often associated with a loss of cohesion of the concrete/claystone interface. Due to the small amounts of gypsum and its μm-size, measurements were performed by ion microprobe. Adaptations were needed on account of the reactivity of gypsum and sulfates in general under the beam. The use of ion microprobe analysis provided evidence of high local isotopic heterogeneity that could be attributed to kinetic fractionation effects. Some analyses suggest a minor contribution of dissolved sulfates in pore water of claystone and possibly of concrete. The perturbation on the concrete side is marked by a significant increase in the bulk sulfur content within three millimeters of the interface with the claystone, showing a sulfur gradient from claystone to concrete. The main objective of this work was to define the extent of the chemical and mineralogical perturbations, taking into account in situ URL conditions, i.e. hydrodynamic conditions (shotcrete sprayed on the gallery walls and subjected to ventilation of the galleries), damaged zone of claystone induced by excavation and multi-scale heterogeneity. This identifies the relevant parameters to better constrain predictive reactive transport models of concrete/claystone interactions at a realistic scale.
ISSN: 0079-1946

hal-01055790
https://hal-brgm.archives-ouvertes.fr/hal-01055790
DOI : 10.1016/j.pce.2014.01.003

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
BACKGROUND: Surveillance of HIV-1 drug resistance in treated patients with plasma viral load (VL) >50 copies/mL. METHODS: The protease and reverse transcriptase (RT) genes were systematically sequenced in samples from 756 patients with VL >50 copies/mL in 2009. The genotyping results were interpreted for each antiretroviral drug (ARV) by using the ANRS algorithm v21. Weighted analyses were used to derive representative estimates of percentages of patients. Prevalence rates were compared with those obtained in 2004 among patients with VL >1000 copies/mL. RESULTS: Sequences were obtained for 506 patients. Sequencing was successful in 45%, 80% and 96% of samples with VL of 51-500, 501-1000 and >1000 copies/mL, respectively. Resistance or possible resistance to at least one ARV was observed in 59% of samples. Overall, 0.9% of samples contained viruses resistant to all drugs belonging to at least three drug classes. All resistance prevalence rates were significantly lower in 2009 than in 2004. CONCLUSION: In France, where 86% of patients were receiving combination antiretroviral therapy in 2009, only 15.0% of patients had a VL >50 copies/mL, suggesting that only 8.9% of treated patients could potentially transmit resistant viruses. Only 0.08% of patients harboured viruses fully resistant to at least three antiretroviral drug classes. Further studies are needed to determine whether resistance continues to decline over time.
ISSN: 0305-7453

hal-00875092
https://hal.archives-ouvertes.fr/hal-00875092
DOI : 10.1093/jac/dkt033
PUBMED : 23404192

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
BACKGROUND AND AIMS: Determining the sources of variation in floral morphology is crucial to understanding the mechanisms underlying Angiosperm evolution. The selection of floral and reproductive traits is influenced by the plant's abiotic environment, florivores and pollinators. However, evidence that variations in floral traits result from mutualistic interactions with insects other than pollinators is lacking in the published literature and has rarely been investigated. We aimed to determine whether the association with either Camponotus femoratus or Pachycondyla goeldii (both involved in seed dispersal and plant protection) mediates the reproductive traits and allocation of Aechmea mertensii, an obligatory ant-garden tank-bromeliad, differently. METHODS: Floral and reproductive traits were compared between the two A. mertensii ant-gardens. The nitrogen flux from the ants to the bromeliads was investigated through experimental enrichments with stable isotopes ((15)N). KEY RESULTS: Camponotus femoratus-associated bromeliads produced inflorescences up to four times longer than did P. goeldii-associated bromeliads. Also, the numbers of flowers and fruits were close to four times higher, and the number of seeds and their mass per fruit were close to 1*5 times higher in C. femoratus than in P. goeldii-associated bromeliads. Furthermore, the (15)N-enrichment experiment showed that C. femoratus-associated bromeliads received more nitrogen from ants than did P. goeldii-associated bromeliads, with subsequent positive repercussions on floral development. Greater benefits were conferred to A. mertensii by the association with C. femoratus compared with P. goeldii ants. CONCLUSIONS: We show for the first time that mutualistic associations with ants can result in an enhanced reproductive allocation for the bromeliad A. mertensii. Nevertheless, the strength and direction of the selection of floral and fruit traits change based on the ant species and were not related to light exposure. The different activities and ecological preferences of the ants may play a contrasting role in shaping plant evolution and speciation.
ISSN: 0305-7364

hal-00819112
https://hal.archives-ouvertes.fr/hal-00819112
DOI : 10.1093/aob/mcr253
PUBMED : 21984729

Éditeur(s) : HAL CCSD
Résumé : International audience
Several forthcoming wireless telecommunication systems will use electromagnetic frequencies at millimeter waves (MMWs), and technologies developed around the 60-GHz band will soon know a widespread distribution. Free nerve endings within the skin have been suggested to be the targets of MMW therapy which has been used in the former Soviet Union. So far, no studies have assessed the impact of MMW exposure on neuronal metabolism. Here, we investigated the effects of a 24-h MMW exposure at 60.4 GHz, with an incident power density (IPD) of 5 mW/cm2, on the dopaminergic turnover of NGF-treated PC12 cells. After MMW exposure, both intracellular and extracellular contents of dopamine (DA) and 3,4-dihydroxyphenylacetic acid (DOPAC) were studied using high performance liquid chromatography. Impact of exposure on the dopamine transporter (DAT) expression was also assessed by immunocytochemistry. We analyzed the dopamine turnover by assessing the ratio of DOPAC to DA, and measuring DOPAC accumulation in the medium. Neither dopamine turnover nor DAT protein expression level were impacted by MMW exposure. However, extracellular accumulation of DOPAC was found to be slightly increased, but not significantly. This result was related to the thermal effect, and overall, no evidence of non-thermal effects of MMW exposure were observed on dopamine metabolism. © 2017 The Author. Published by Oxford University Press on behalf of The Japan Radiation Research Society and Japanese Society for Radiation Oncology.
Journal of Radiation Research

hal-01580502
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01580502
DOI : 10.1093/jrr/rrx004
PUBMED : 28339776

Date de création : 1870-01-01

Éditeur(s) : London : Bell & Daldy
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Collectivité territoriale de Guyane. Bibliothèque Alexandre-Franconie
Permalien : http://www.manioc.org/patrimon/FRA11002
FRA11002

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Although prenatal exposure to water disinfection by-products does not appear to affect the duration of gestation, its impact on fetal growth remains an open question. The authors studied the associations between prenatal exposure to disinfection by-products and fetal growth restriction (FGR) and preterm birth in the PELAGIE cohort, a French birth cohort comprising 3,421 pregnant women recruited between 2002 and 2006. Exposure was assessed by estimating levels of trihalomethanes (THMs) in tap water during pregnancy and maternal water use and by measuring maternal urinary levels of trichloroacetic acid (TCAA) during early pregnancy in a nested case-control design that compared 174 FGR cases, 114 preterm births, and 399 controls. Higher uptake of THMs (especially brominated THMs) was associated with a higher risk of FGR. Women with TCAA detected in their urine (>0.01 mg/L) had a higher risk of FGR than those with TCAA levels below the detection limit (adjusted odds ratio = 1.8, 95% confidence interval: 0.9, 3.7) and had an odds ratio for preterm birth below 1 (adjusted odds ratio = 0.8, 95% confidence interval: 0.3, 2.6). Results from this prospective study, the first to use a biomarker of disinfection by-product exposure, suggest that prenatal exposure affects fetal growth, but the causal agent or agents remain to be identified.
ISSN: 0002-9262

hal-00682627
https://hal.archives-ouvertes.fr/hal-00682627
DOI : 10.1093/aje/kwr419
PUBMED : 22156019

Éditeur(s) : London : T. Fisher Unwin
Extrait de : The adventure series
Résumé : A new illustrated edition. Le traducteur Charles Johnson serait un pseudonyme, souvent attribué à Daniel Defoe, à tort d'après l'Oxford DNB (entrée : Johnson, Charles (fl. 1724-1734)).
Siècle(s) traité(s) : 16
Droits : Domaine public
Provenance : Archives territoriales de Guyane
Permalien : http://www.manioc.org/patrimon/GAD12006
GAD12006