Éditeur(s) : Copernicus Gesellschaft Mbh
Résumé : The distributions of the bio-essential trace element dissolved cobalt (DCo) and the apparent particulate Co (PCo) are presented along the GEOTRACES-A02 deep section from 64(o) N to 50(o) S in the western Atlantic Ocean (longest section of international GEOTRACES marine environment program). PCo was determined as the difference between total cobalt (TCo, unfiltered samples) and DCo. DCo concentrations ranged from 14.7 pM to 94.3 pM, and PCo concentrations from undetectable values to 18.8 pM. The lowest DCo concentrations were observed in the subtropical domains, and the highest in the low-oxygenated Atlantic Central Waters (ACW), which appears to be the major reservoir of DCo in the western Atlantic. In the Antarctic Bottom Waters, the enrichment in DCo with aging of the water mass can be related to suspension and redissolution of bottom sediments a well as diffusion of DCo from abyssal sediments. Mixing and dilution of deep water masses, rather than scavenging of DCo onto settling particles, generated the meridional decrease of DCo along the southward large-scale circulation in the deep western Atlantic. Furthermore, the apparent scavenged profile of DCo observed in the deep waters likely resulted from the persistence of relatively high concentrations in intermediate waters and low DCo concentrations in underlaying bottom waters. We suggest that the 2010 Icelandic volcanic eruption could have been a source of DCo that could have been transported into the core of the Northeast Atlantic Deep Waters. At intermediate depths, the high concentrations of DCo recorded in the ACW linearly correlated with the apparent utilization of oxygen (AOU), indicating that remineralization of DCo could be significant (representing up to 37% of the DCo present). Furthermore, the preferential remineralization of phosphate (P) compared to Co in these low-oxygenated waters suggests a decoupling between the deep cycles of P and Co. The vertical diffusion of DCo from the ACW appears to be a significant source of DCo into the surface waters of the equatorial domain. Summarizing, the dilution due to mixing processes rather than scavenging of DCo and the above-mentioned remineralization could be the two major pathways controlling the cycling of DCo into the intermediate and deep western Atlantic.
Biogeosciences (1726-4170) (Copernicus Gesellschaft Mbh), 2014 , Vol. 11 , N. 6 , P. 1561-1580

Droits : Author(s) 2014. CC Attribution 3.0 License.
http://archimer.ifremer.fr/doc/00241/35223/33727.pdf
DOI:10.5194/bg-11-1561-2014
http://archimer.ifremer.fr/doc/00241/35223/

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We investigate the contribution of atmospheric and its induced non-tidal oceanic loading effects on surface time-varying gravity and tilt measurements for several stations in Western Europe. The ocean response to pressure forcing can be modelled accordingly to the inverted barometer, i.e. assuming that air pressure variations are fully compensated by static sea height changes, or using ocean general circulation models.Wevalidate two runs of theHUGO-mbarotropic ocean model by comparing predicted sea surface height variations with hundred tide-gauge measurements along the European coasts. We then show that global surface pressure field, as well as a barotropic high-resolution ocean model forced by air pressure and winds allow in most cases a significant reduction of the variance of gravity residuals and, to a smaller extends tilt residuals. Wefinally show that precise gravity measurements with superconducting gravimeters allow the observation of large storm surges, occurring in the North Sea, even for inland stations. However, we also confirm that the continental hydrology contribution cannot be neglected. Thanks to their specific sensitivity feature, only tiltmeters closest to the coast can clearly detect the loading due to these storm surges.
ISSN: 0264-3707

hal-00708046
https://hal.archives-ouvertes.fr/hal-00708046
https://hal.archives-ouvertes.fr/hal-00708046/document
https://hal.archives-ouvertes.fr/hal-00708046/file/ETS2008_BOY.pdf
BIBCODE : 2009JGeo...48..182B

Éditeur(s) : HAL CCSD
Résumé : International audience
New inclinometers devoted to hydrological studies were set up in the Vosges Mountains (France). Two orthogonal 100-meter base hydrostatic inclinometers were installed in December 2004 as well as a hydrometeorological monitoring system for the 100-km² hydrological unit around the inclinometer. As inclinometers are very sensitive to environmental influences, this observatory is a test site to confront hydrological modelling and geodetic observations. Physical modelling to remove hydrological effects without calibrating on geodetic data is tested on these instruments. Specifically, two deformation processes are most important: fluid pressure variations in nearby hydraulically active fractures and surface loading at regional scale.
International Association of Geodesy Symposia
Perugia, Italy

hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442/document
https://hal.archives-ouvertes.fr/hal-00710442/file/2007IUGG_proceedingsIAG.pdf
DOI : 10.1007/978-3-540-85426-5_63