Éditeur(s) : Centro Internacional de Mejoramiento de Maíz y Trigo, CIMMYT Centro Internacional de Mejoramiento de Maíz y Trigo, CIMMYT ( México D.F )
Résumé : (Bibliography) Includes bibliographical references (p. 61).
(Statement of Responsibility) Derek Byerlee, Larry Harrington, Paul Marko.
(Funding) Working paper (International Maize and Wheat Improvement Center. Economics Program) ;
Mexico
Mexico

11562304

Éditeur(s) : George A. Smathers Libraries, University of Florida George A. Smathers Libraries, University of Florida ( Gainesville, FL )

http://ufdc.ufl.edu/UF00095138/00001

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Wiley/Blackwell
Résumé : International audience
This article documents the addition of 512 microsatellite marker loci and nine pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Alcippe morrisonia morrisonia, Bashania fangiana, Bashania fargesii, Chaetodon vagabundus, Colletes floralis, Coluber constrictor flaviventris, Coptotermes gestroi, Crotophaga major, Cyprinella lutrensis, Danaus plexippus, Fagus grandifolia, Falco tinnunculus, Fletcherimyia fletcheri, Hydrilla verticillata, Laterallus jamaicensis coturniculus, Leavenworthia alabamica, Marmosops incanus, Miichthys miiuy, Nasua nasua, Noturus exilis, Odontesthes bonariensis, Quadrula fragosa, Pinctada maxima, Pseudaletia separata, Pseudoperonospora cubensis, Podocarpus elatus, Portunus trituberculatus, Rhagoletis cerasi, Rhinella schneideri, Sarracenia alata, Skeletonema marinoi, Sminthurus viridis, Syngnathus abaster, Uroteuthis (Photololigo) chinensis, Verticillium dahliae, Wasmannia auropunctata, and Zygochlamys patagonica. These loci were cross-tested on the following species: Chaetodon baronessa, Falco columbarius, Falco eleonorae, Falco naumanni, Falco peregrinus, Falco subbuteo, Didelphis aurita, Gracilinanus microtarsus, Marmosops paulensis, Monodelphis Americana, Odontesthes hatcheri, Podocarpus grayi, Podocarpus lawrencei, Podocarpus smithii, Portunus pelagicus, Syngnathus acus, Syngnathus typhle,Uroteuthis (Photololigo) edulis, Uroteuthis (Photololigo) duvauceli and Verticillium albo-atrum. This article also documents the addition of nine sequencing primer pairs and sixteen allele specific primers or probes for Oncorhynchus mykiss and Oncorhynchus tshawytscha; these primers and assays were cross-tested in both species.
ISSN: 1755-098X

hal-01094222
https://hal-agroparistech.archives-ouvertes.fr/hal-01094222
DOI : 10.1111/j.1755-0998.2010.02916.x

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is < 2000 mm yr(-1) (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall < 2000 mm yr(-1).
ISSN: 1726-4170

hal-01557759
https://hal.univ-lorraine.fr/hal-01557759
https://hal.univ-lorraine.fr/hal-01557759/document
https://hal.univ-lorraine.fr/hal-01557759/file/bg-13-2537-2016.pdf
DOI : 10.5194/bg-13-2537-2016

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Generation and emplacement of felsic magmas in the Paleoproterozoic Baoulé-Mossi domain, West African Craton does not match the apparent peaks of global crust generation identified between ca. 2900–2600, 1900–1600 and 1200–900 Ma. In contrast, across the Baoulé-Mossi domain, the emplacement of felsic intrusions ranges from ca. 2300 to 2000 Ma. It has proven difficult to place this magmatism within a robust geodynamic framework due to the lack of accurate geochronological data from across the West African Craton. The present study addresses this issue by presenting eighty-four new felsic intrusions zircon ion microprobe and LA-ICP-MS U-Pb ages from areas that up until now have not been targeted for geochronology. The new dataset, when fully integrated with existing age data, reveals a craton-wide diachronous geochronological pattern characterized by a magmatic front that migrated westward. This migration proceeded at a rate of 35 km per million years, with an apparent offset of the initiation and cessation of felsic magmatic activity between the east and west of approximately 50 million years. The new data also show that although the entire Baoulé-Mossi domain was subject to continuous magmatic activity for at least 150 million years, this magmatic activity displays a rather different record in the eastern and western portions of the domain. The differences are expressed as a westward migration of the magmatic activity, cessation of activity around ca. 2100 Ma (easternmost portion) and ca. 2050 Ma (westernmost portion) and a higher incidence of inherited ages in the westernmost portion when compared to the easternmost region. In addition, the new U-Pb data identify some of the oldest felsic intrusions in the region, including a granite from Burkina Faso (2265 ± 17 Ma) and a diorite porphyry (2216 ± 5 Ma) in southern Mali. This study also reveals inherited Archean zircon cores from across southern Mali. The combination of the new data presented here, along with previously published data, suggests that the Baoulé-Mossi domain formed from the accretion of two major crustal blocks. The Archean inherited ages open a window for further investigation of the interaction between the Archean Kénéma-Man and the Paleoproterozoic Baoulé-Mossi domains.
ISSN: 0301-9268

hal-01623272
https://hal.archives-ouvertes.fr/hal-01623272
DOI : 10.1016/j.precamres.2017.07.036

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The crust of the Paleoproterozoic West African Craton in northern Ghana is dominantly made of Tonalite-Trondhjemite-Granodiorite (TTG) suites, low-K to high-K calc-alkaline granites, with minor LILE-enriched diorites, and chemically related lavas. Results of zircon U-Pb dating indicate that all these different rock types were formed together over a prolonged period of ca. 100 Ma, between 2.21 and 2.11 Ga. Zircon Hf isotope compositions of five samples are supra-chondritic (εHft from +1 to +6) indicating that the granitoids derive from the reworking of juvenile crustal components as old as 2.60 Ga. Geochemical data show that the TTGs were derived from the reworking of a low-K mafic crust, while biotite granites formed by the reworking of older felsic crustal rocks, and diorites derived from the melting of LILE-enriched mantle sources.The combined datasets support a three-step model for the formation of the crust of the West African craton in northern Ghana: (1) a juvenile, mafic proto-crust was extracted from the depleted mantle between 2.60 and 2.30 Ga, in an oceanic environment remote from any pre-existing continental nucleus; (2) the mafic proto-crust was reworked in several primitive magmatic arcs or in accreted oceanic plateaux. Crustal reworking initially produced minor felsic magmatism between 2.35 and 2.21 Ga, followed by the 2.21–2.15 Ga emplacement of low- to medium-P TTG and K-rich calc-alkaline granitoid suites, and was coeval with the formation of an enriched mantle source. (3) Various proto-continental terranes collided during the Eburnean orogeny between 2.14 and 2.11 Ga, triggering intense reworking of the composite crust and mantle reservoirs formed in the previous two steps, i.e. remnants of the juvenile mafic crust, older TTGs and biotite granites, and previously enriched mantle sources. The emplacement of high-P TTGs, granites and LILE-enriched diorites resulted from lower crustal heating in response to the delamination of the lower crust and lithospheric mantle. The Eburnean collision therefore marks the final stages of a 200–500 Ma long period of juvenile continental crust formation and stabilisation. The datasets further reveal that the Paleoproterozoic West African Craton comprises a minimum of two distinct crustal blocks, with north-western Ghana lying at their interface.
ISSN: 0301-9268

hal-01467999
https://hal.archives-ouvertes.fr/hal-01467999
DOI : 10.1016/j.precamres.2016.10.011