Éditeur(s) : Elsevier
Résumé : Antimicrobial peptides play a major role in innate immunity. The penaeidins, initially characterized from the shrimp Litopenaeus vannamei, are a family of antimicrobial peptides that appear to be expressed in all penaeid shrimps. As of recent, a large number of penaeid nucleotide sequences have been identified from a variety of penaeid shrimp species and these sequences currently reside in several databases under unique identifiers with no nomenclatural continuity. To facilitate research in this field and avoid potential confusion due to a diverse number of nomenclatural designations, we have made a systematic effort to collect, analyse, and classify all the penaeidin sequences available in every database. We have identified a common penaeidin signature and subsequently established a classification based on amino acid sequences. In order to clarify the naming process, we have introduced a 'penaeidin nomenclature' that can be applied to all extant and future penaeidins. A specialized database, PenBase, which is freely available at http://www.penbase.immunaqua.com, has been developed for the penaeidin family of antimicrobial peptides, to provide comprehensive information about their properties, diversity and nomenclature. (c) 2005 Elsevier Ltd. All rights reserved.
Developmental & Comparative Immunology (0145-305X) (Elsevier), 2006 , Vol. 30 , N. 3 , P. 283-288

Droits : 2005 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2006/publication-2332.pdf
DOI:10.1016/j.dci.2005.04.003
http://archimer.ifremer.fr/doc/00000/2332/

Éditeur(s) : Public Library Science
Résumé : Changes in phenology, the timing of seasonal activities, are among the most frequently observed responses to environmental disturbances and in marine species are known to occur in response to climate changes that directly affects ocean temperature, biogeochemical composition and sea level. We examined nesting seasonality data from long-term studies at 8 green turtle (Chelonia mydas) rookeries that include 21 specific nesting sites in the South-West Indian Ocean (SWIO). We demonstrated that temperature drives patterns of nesting seasonality at the regional scale. We found a significant correlation between mean annual Sea Surface Temperature (SST) and dates of peak nesting with rookeries exposed to higher SST having a delayed nesting peak. This supports the hypothesis that temperature is the main factor determining peak nesting dates. We also demonstrated a spatial synchrony in nesting activity amongst multiple rookeries in the northern part of the SWIO (Aldabra, Glorieuses, Mohéli, Mayotte) but not with the eastern and southern rookeries (Europa, Tromelin), differences which could be attributed to females with sharply different adult foraging conditions. However, we did not detect a temporal trend in the nesting peak date over the study period or an inter-annual relation between nesting peak date and SST. The findings of our study provide a better understanding of the processes that drive marine species phenology. The findings will also help to predict their ability to cope with climate change and other environmental perturbations. Despite demonstrating this spatial shift in nesting phenology, no trend in the alteration of nesting dates over more than 20 years was found.
Plos One (1932-6203) (Public Library Science), 2012-10 , Vol. 7 , N. 10 , P. 1-13

Droits : 2012 Dalleau et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00098/20940/18558.pdf
DOI:10.1371/journal.pone.0046920
http://archimer.ifremer.fr/doc/00098/20940/

Éditeur(s) : Elsevier Science Bv
Résumé : Although Ni isotopes have been shown to be significantly fractionated in terrestrial samples, their use in continental environmental studies has not yet been evaluated. The present study focuses on an ultramafic (UM) massif (Barro Alto, Goias, Brazil) because such areas are naturally rich in Ni. We present developed lateritic weathering profiles. The goal of the study is to evaluate the potential of using Ni isotopes in environmental continental studies by combining its isotopic signature with mineralogy, in order to better understand the geochemical cycling of Ni in UM settings during weathering. As such, Ni isotope values were measured in samples from the Barro Alto UM complex in the main stages of the lateritic weathering profile of UM rocks, including bedrock, ores (saprolitic and lateritic samples) and soil. The mineralogical composition of the samples, with a focus on the different Ni-bearing minerals, was also determined to decipher the potential links between isotopic fractionation and weathering dynamics. Isotopic signatures (δ60Ni) from the natural Ni geochemical cycle include: bedrock samples (δ60Ni = 0.28 ± 0.08‰), ore samples (saprolitic and lateritic, δ60Ni from -0.60 to 0.30‰) and soil samples (δ60Ni from -0.19 to -0.02‰). An overall trend of heavier isotope depletion was observed in the solid phase during weathering (Δ60NiSoil-Bedrock = -0.47‰). The mineralogical results were consistent with the literature and showed that the mineralogy of the lateritic part and soil was dominated by Fe-oxides, whereas clay minerals were the primary Ni phase scavengers in the saprolitic part of the profile. Thus, the formation of Ni-bearing clay minerals and Fe-oxides appeared to lead to depletion in heavier isotopes, which indicates preferential export of heavy isotopes in the dissolved phase. This result is consistent with isotopic signatures measured in the exchangeable pool of the solid phase (Δ60Niexch-total up to 0.47‰), and Ni isotopes appear to be a promising tracer to better understand the biogeochemical Ni cycling on the Earth’s surface.
Chemical Geology (0009-2541) (Elsevier Science Bv), 2015-05 , Vol. 402 , P. 68-76

Droits : 2015 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00254/36553/35098.pdf
DOI:10.1016/j.chemgeo.2015.02.039
http://archimer.ifremer.fr/doc/00254/36553/