Éditeur(s) : American Geophysical Union
Résumé : We present four companion digital models of the age, age uncertainty, spreading rates, and spreading asymmetries of the world's ocean basins as geographic and Mercator grids with 2 arc min resolution. The grids include data from all the major ocean basins as well as detailed reconstructions of back-arc basins. The age, spreading rate, and asymmetry at each grid node are determined by linear interpolation between adjacent seafloor isochrons in the direction of spreading. Ages for ocean floor between the oldest identified magnetic anomalies and continental crust are interpolated by geological estimates of the ages of passive continental margin segments. The age uncertainties for grid cells coinciding with marine magnetic anomaly identifications, observed or rotated to their conjugate ridge flanks, are based on the difference between gridded age and observed age. The uncertainties are also a function of the distance of a given grid cell to the nearest age observation and the proximity to fracture zones or other age discontinuities. Asymmetries in crustal accretion appear to be frequently related to asthenospheric flow from mantle plumes to spreading ridges, resulting in ridge jumps toward hot spots. We also use the new age grid to compute global residual basement depth grids from the difference between observed oceanic basement depth and predicted depth using three alternative age-depth relationships. The new set of grids helps to investigate prominent negative depth anomalies, which may be alternatively related to subducted slab material descending in the mantle or to asthenospheric flow. A combination of our digital grids and the associated relative and absolute plate motion model with seismic tomography and mantle convection model outputs represents a valuable set of tools to investigate geodynamic problems.
Geochemistry Geophysics Geosystems - G3 (1525-2027) (American Geophysical Union), 2008-04 , Vol. 9 , P. NIL_18-NIL_36

Droits : 2008 American Geophysical Union
http://archimer.ifremer.fr/doc/2008/publication-3900.pdf
DOI:10.1029/2007GC001743
http://archimer.ifremer.fr/doc/00000/3900/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
An intensive water vapour intercomparison effort, involving airborne and ground-based water vapour lidar systems, was carried out in the framework of the COPS experiment. The main objective of this paper is to provide accurate error estimates for these systems. Comparisons between the ground-based Raman lidar BASIL and the airborne CNRS DIAL (Differential Absorption Lidar) indicate a mean relative bias between the two sensors, calculated with respect to the mean value of −2.13% (−0.034 g kg−1) in the altitude region 0.5-3.5 km, while comparisons between BASIL and the airborne DLR DIAL lead to a mean relative bias of 1.87% (0.018 g kg−1) in this same altitude region. Comparisons between the ground-based UHOH DIAL and the CNRS DIAL indicate a bias of −3.2% (−0.37 × 1022 m−3) in the altitude range 1.5-4.5 km, while comparisons between the UHOH DIAL and the DLR DIAL indicate a bias of 0.83% (0.06 × 1022 m−3) in this same altitude range. Based on the available comparisons between the ground-based Raman lidar BERTHA and the CNRS DIAL, the mean relative bias is found to be −4.37% (−0.123 g kg−1) in the altitude region 0.5-4.5 km. Comparisons between the ground-based IGN Raman lidar and the CNRS DIAL indicate a bias of 3.18% (0.55 g kg−1) in the altitude range from 0.5 to 4.5 km, while comparisons between the CNRS DIAL and DLR DIAL result in a mean relative bias of 3.93% (1.1 × 1022 m−3) in the altitude interval 0.5-4.0 km. Based on the available statistics of comparisons, benefiting from the fact that the CNRS DIAL was able to be compared with all other lidar systems, and putting equal weight on the data reliability of each instrument, overall relative values for BASIL, BERTHA, IGN Raman lidar, UHOH DIAL, DLR DIAL, and CNRS DIAL, with respect to the mean value, are found to be −0.38, −2.60, 4.90, −1.43, −2.23 and 1.72%, respectively.
ISSN: 0035-9009

hal-00572576
https://hal.archives-ouvertes.fr/hal-00572576
DOI : 10.1002/qj.697

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The geologic evolution of the South Armenian Block (SAB) in the Mesozoic is reconstructed from a structural, metamorphic, and geochronologic study including U–Pb and 40Ar/39Ar dating. The South Armenian Block Crystalline Basement (SABCB) outcrops solely in a narrow tectonic window, NW of Yerevan. The study of this zone provides key and unprecedented information concerning closing of the Northern Neotethys oceanic domain north of the Taurides-Anatolides platform from the Middle Jurassic to the Early Cretaceous. The basement comprises of presumed Proterozoic orthogneiss overlain by metamorphosed pelites as well as intrusions of granodiorite and leucogranite during the Late Jurassic and Early Cretaceous. Structural, geochronological and petrological observations show a multiphased evolution of the northern margin of the SAB during the Late Jurassic and Early Cretaceous. A south-dipping subduction under the East Anatolian Platform-South Armenian Block (EAP-SAB) is proposed in order to suit recent findings pertaining emplacement of relatively hot subduction related granodiorite as well as the metamorphic evolution of the crystalline basement in the Lesser Caucasus area. The metamorphism is interpreted as evidencing: (1) M1 Barrovian MP–MT conditions (staurolite–kyanite) at c. 157–160 Ma and intrusion of dioritic magmas at c. 150–156 Ma, (2) near-adiabatic decompression is featured by partial melting and production of leucogranites at c. 153 Ma, followed by M2 HT–LP conditions (andalusite–K-feldspar). A phase of shearing and recrystallization is ascribed to doming at c. 130–150 Ma and cooling at 400 °C by c. 123 Ma (M3). Structural observations show (1) top to the north shearing during M1 and (2) radial extension during M2. The extensional event ends by emplacement of a thick detrital series along radial S, E and W-dipping normal faults. Further, the crystalline basement is unconformably covered by Upper Cretaceous-Paleocene series dated by nannofossils, evolving from Maastrichtian marly sandstones to Paleocene limestones.
ISSN: 0743-9547

hal-01174077
https://hal.archives-ouvertes.fr/hal-01174077
DOI : 10.1016/j.jseaes.2014.07.018

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The continental South Armenian Block – part of the Anatolide–Tauride South Armenian microplate – of Gondwana origin rifted from the African margin after the Triassic and collided with the Eurasian margin after the Late Cretaceous. During the Late Cretaceous, two northward dipping subduction zones were simultaneously active in the northern Neo-Tethys between the South Armenian Block in the south and the Eurasian margin in the north: oceanic subduction took place below the continental Eurasian margin and intra-oceanic subduction resulted in ophiolite obduction onto the South Armenian Block in the Late Cretaceous.The paleolatitude position of the South Armenian Block before its collision with Eurasia within paleogeographic reconstructions is poorly determined and limited to one study. This earlier study places the South Armenian Block at the African margin in the Early Jurassic. To reconstruct the paleolatitude history of the South Armenian Block, we sampled Upper Devonian–Permian and Cretaceous sedimentary rocks in Armenia. The sampled Paleozoic rocks have likely been remagnetized. Results from two out of three sites sampled in Upper Cretaceous strata pass fold tests and probably all three carry a primary paleomagnetic signal. The sampled sedimentary rocks were potentially affected by inclination shallowing. Therefore, two sites that consist of a large number of samples (> 100) were corrected for inclination shallowing using the elongation/inclination method.These are the first paleomagnetic data that quantify the South Armenian Block's position in the Tethys ocean between post-Triassic rifting from the African margin and post-Cretaceous collision with Eurasia. A locality sampled in Lower Campanian Eurasian margin sedimentary rocks and corrected for inclination shallowing, confirms that the corresponding paleolatitude falls on the Eurasian paleolatitude curve. The north–south distance between the South Armenian Block and the Eurasian margin just after Coniacian–Santonian ophiolite obduction was at most 1000 km.
ISSN: 0040-1951

hal-01365871
https://hal.archives-ouvertes.fr/hal-01365871
DOI : 10.1016/j.tecto.2015.01.012

Éditeur(s) : HAL CCSD
Résumé : TNF-Related Apoptosis-Inducing Ligand (TRAIL) is a well-known apoptosis inducer, which activates the extrinsic death pathway. TRAIL is pro-apoptotic on colon cancer cells, while not cytotoxic towards normal healthy cells. However, its clinical use is limited by cell resistance to cell death which occurs in approximately 50% of cancer cells. Short Chain Fatty Acids (SCFA) are also known to specifically induce apoptosis of cancer cells. In accordance, we have shown that food grade dairy propionibacteria induce intrinsic apoptosis of colon cancer cells, via the production and release of SCFA (propionate and acetate) acting on mitochondria. Here, we investigated possible synergistic effect between Propionibacterium freudenreichii and TRAIL. Indeed, we hypothesized that acting on both extrinsic and intrinsic death pathways may exert a synergistic pro-apoptotic effect. Whole transcriptomic analysis demonstrated that propionibacterial supernatant or propionibacterial metabolites (propionate and acetate), in combination with TRAIL, increased pro-apoptotic gene expression (TRAIL-R2/DR5) and decreased anti-apoptotic gene expression (FLIP, XIAP) in HT29 human colon cancer cells. The revealed synergistic pro-apoptotic effect, depending on both death receptors (TRAIL-R1/DR4, TRAIL-R2/DR5) and caspases (caspase-8, -9 and -3) activation, was lethal on cancer cells but not on normal human intestinal epithelial cells (HIEC), and was inhibited by Bcl-2 expression. Finally, milk fermented by P. freudenreichii induced HT29 cells apoptosis and enhanced TRAIL cytotoxic activity, as did P. freudenreichii DMEM culture supernatants or its SCFA metabolites. These results open new perspectives for food grade P. freudenreichii-containing products in order to potentiate TRAIL-based cancer therapy in colorectal cancer.
4 . International Symposium on Propionibacteria and Bibfidobacteria
Cork, Ireland

hal-01372131
https://hal.archives-ouvertes.fr/hal-01372131
PRODINRA : 371605