Éditeur(s) : HAL CCSD
Résumé : The bacterial microbiota of ants (Hymenoptera: Formicidae) is known to have a defensive role in social insects, particularly for leaf-cutting ants (Formicidae: Attini) due to the use of antimicrobial molecules produced by cuticular actinobacteria. In this thesis, we studied the bacterial microbiota of ants in French Guyana using different approaches based on natural products chemistry and molecular ecology. The first chapter describes the isolation, identification, culture and biological evaluations of 43 cuticular actinobacteria. Antagonism bioassays of isolated strains and antibiotic activities of the culture extracts against human pathogens are presented as well as the identification of an antimicrobial cyclic dipeptide (Cyclo (LPro-LPhe)) isolated from a strain close to Streptomyces thioluteus. Moreover, the implementation of molecular networks applied to UPLC/MS/MS analysis of actinobacterial cocultures allowed us to explore the diversity of metabolites produced under these conditions. The second chapter presents a methodological study to evaluate the capacity of four DNA extraction methods, in terms of richness and composition of the cuticular bacterial microbiota, in high-throughput sequencing from Atta cephalotes and Pseudomyrmex penetrator. The results of metabarcoding highlight two methods of extraction and reveal inter- and intraspecific differences in the composition of cuticular bacterial communities. Finally, chapter three describes the composition of the cuticular bacterial microbiota of Camponotus femoratus and Crematogaster levior in ant garden and the results reveal the acquisition in the environment of a part of the microbiota. In parallel, metabolomic analyses of ant’s cuticle show, on the contrary, a greater specificity related to the ant species. Future researches focusing on statistical analysis strategies combining metabarcoding and metabolomics data are discussed.
Le microbiote bactérien cuticulaire des fourmis (Hymenoptera : Formicidae) est connu pour avoir un rôle défensif chez ces insectes sociaux, notamment chez les fourmis attines (Formicidae : Attini) grâce l’utilisation de molécules antimicrobiennes produites par des actinobactéries cuticulaires. Dans le cadre de cette thèse, nous avons étudié le microbiote bactérien des fourmis de Guyane en utilisant différentes approches en chimie des produits naturels et en écologie moléculaire. Le premier chapitre décrit l’isolement, l’identification, la culture et l’évaluation biologique de 43 actinobactéries cuticulaires de fourmis de Guyane. Les tests d’antagonismes des souches isolées et l’activité antibiotique des extraits de culture contre des micro-organismes pathogènes humains sont présentés ainsi que l’identification d’un dipeptide cyclique (Cyclo(LPro-LPhe)) antimicrobien qui a été isolé à partir d’une souche proche de Streptomyces thioluteus. Par ailleurs, la mise en œuvre de réseaux moléculaires appliqués à une analyse par UPLC/MS/MS de cocultures d’actinobactéries a permis d’explorer la diversité des métabolites produits dans ces conditions. Le deuxième chapitre présente une étude méthodologique pour comparer quatre méthodes d’extraction d’ADN, en termes de richesse et de composition du microbiote bactérien cuticulaire, par séquençage haut débit à partir des espèces Atta cephalotes et Pseudomyrmex penetrator. Les résultats du métabarcoding ADN mettent en lumière deux méthodes d’extraction et révèlent des différences inter- et intraspécifiques dans la composition des communautés bactériennes cuticulaires. Enfin, le chapitre trois décrit la composition du microbiote bactérien cuticulaire des espèces Camponotus femoratus et Crematogaster levior dans les jardins de fourmis. Les résultats soulignent l’acquisition d’une partie du microbiote dans l’environnement. En parallèle l’analyse métabolomique des cuticules montre à contrario une plus grande spécificité liée à l’espèce de fourmi. Les recherches futures axées sur les stratégies d’analyses statistiques combinant le métabarcoding et la métabolomique sont discutées.
https://tel.archives-ouvertes.fr/tel-01537793

NNT : 2017YANE0003
tel-01537793
https://tel.archives-ouvertes.fr/tel-01537793
https://tel.archives-ouvertes.fr/tel-01537793/document
https://tel.archives-ouvertes.fr/tel-01537793/file/thesecarolinebirer.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Phthalates are common atmospheric contaminantsused in the plastic industry. Ants have been shown to constitutegood bioindicators of phthalate pollution. Hence,phthalates remain trapped on ant cuticles which are mostlycoated with long-chain hydrocarbons. In this study, we artificiallycontaminated Lasius niger ants with four phthalates:dibutyl phthalate (DBP), diisobutyl phthalate (DiBP), di(2-ethylhexyl) phthalate (DEHP), and benzyl butyl phthalate(BBP). The first three have previously been found on ants innature in Touraine (France), while the fourth has not. The fourphthalates disappeared rapidly (less than 5 days) from thecuticles of live ants. In contrast, on the cuticles of dead ants,DEHP quantities remained unchanged over time. These resultsindicate that phthalates are actively absorbed by thecuticles of live ants. Cuticular absorption of phthalates isnonspecific because eicosane, a nonnatural hydrocarbon onL. niger cuticle, was similarly absorbed. Ants are importantecological engineers and may serve as bioindicators of ecosystemhealth. We also suggest that ants and more generallyterrestrial arthropods may contribute to the removal ofphthalates from the local environment
ISSN: 0944-1344

hal-01081622
https://hal.archives-ouvertes.fr/hal-01081622
https://hal.archives-ouvertes.fr/hal-01081622/document
https://hal.archives-ouvertes.fr/hal-01081622/file/Lenoir-et-al-ESPR2014-10.1007_s11356-014-3272-2.pdf
DOI : 10.1007/s11356-014-3272-2

Éditeur(s) : HAL CCSD Inter-Research
Résumé : International audience
Sphaeroma serratum is a marine isopod species that inhabits seashores from Europe to West Africa. The individuals live under stones in direct contact with reduced sediments and harbour a diverse bacterial community on the cuticle of their pleopods. We investigated the diversity of these epibiotic bacteria on male (pubescent and senescent) and female specimens with electron microscopic obser vations and molecular tools. The microbial community of S. serratum was shown to be composed of at least 5 bacterial morphotypes observed on the pleopodal cuticle in all male specimens. Using fluorescence in situ hybridization, we identified 5 major phylogenetic groups (α-, β-, γ- and δ-Proteobacteria and Archaea) whereas denaturing gradient gel electro - phoresis (DGGE) of PCR-amplified 16S rRNA gene fragments of epibiotic bacteria revealed 50 bands. The bacterial community associated with S. serratum seems more diverse than in other marine crustaceans, such as Rimicaris. The relative diversity of this bacterial community was also studied in relation to the molt cycle. The comparison of DGGE band patterns of several individuals from female, pubescent male and senescent male groups revealed that the bacterial community diversity was dependent on the sex and the age of the individuals and more generally on the molt status.
Marine Ecology Progress Series

hal-00743743
https://hal.univ-antilles.fr/hal-00743743
DOI : 10.3354/meps09711

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Because territoriality is energetically costly, territorial animals frequently respond less aggressively toneighbours than to strangers, a reaction known as the "dear enemy phenomenon" (DEP). The contrary,the "nasty neighbour effect" (NNE), occurs mainly for group-living species defending resource-basedterritories. We studied the relationships between supercolonies of the pest fire ant Solenopsis saevissimaand eight ant species able to live in the vicinity of its nests plus Eciton burchellii, an army ant predatorof other ants. The workers from all of the eight ant species behaved submissively when confrontedwith S. saevissima (dominant) individuals, whereas the contrary was never true. Yet, S. saevissima weresubmissive towards E. burchellii workers. Both DEP and NNE were observed for the eight ant species, withsubmissive behaviours less frequent in the case of DEP. To distinguish what is due to chemical cues fromwhat can be attributed to behaviour, we extracted cuticular compounds from all of the nine ant speciescompared and transferred them onto a number of S. saevissima workers that were then confronted withuntreated conspecifics. The cuticular compounds from three species, particularly E. burchellii, triggeredgreater aggressiveness by S. saevissima workers, while those from the other species did not.
ISSN: 0376-6357

hal-00913344
https://hal.archives-ouvertes.fr/hal-00913344
https://hal.archives-ouvertes.fr/hal-00913344/document
https://hal.archives-ouvertes.fr/hal-00913344/file/roux_10206.pdf
DOI : 10.1016/j.beproc.2013.04.014

Éditeur(s) : Elsevier
Résumé : In May 1997, some white lesions evoking the white spot syndrome disease were observed in Litopenaeus stylirostris broodstock in New Caledonia. The occurrence of these lesions was neither associated with mortality, nor with histological evidence of white spot syndrome baculovirus (WSBV), The evidence suggests that these lesions result from a form of bacterial disease and are associated with an increased bacterial flora on the outer surface of the cuticle, as well as an increased incidence throughout the molt cycle. A microscopic observation of these lesions allows them to be differentiated from WSBV-associated lesions.
Aquaculture (0044-8486) (Elsevier), 2000-03 , Vol. 183 , N. 1-2 , P. 25-30

Droits : 2000 Elsevier Science B.V. All rights reserved
http://archimer.ifremer.fr/doc/2000/publication-373.pdf
DOI:10.1016/S0044-8486(99)00284-7
http://archimer.ifremer.fr/doc/00000/373/

Éditeur(s) : Editions de l’institut Universitaire Européen de la Mer
Résumé : Epsilonematids are epifaunal nematodes characterized by an epsilon-shaped body and the presence of ambulatory setae, which are used in their locomotion. Nematodes belonging to this family were recently found in deep sea, especially in cold-water coral and seamount ecosystems. Akanthepsilonema oceanopolis sp. nov. (Nematoda: Epsilonematidae) is described from sediments of the Condor Seamount (North-East Atlantic Ocean) at 206 m water depth. Its main features are a heterogeneous cuticule with large horn-like dorsal spines both in anterior and in posterior regions; the presence of eight subcephalic setae arranged in two rows and the ratio maximum/minimum body diameter larger than two. The taxonomic position of this new species within the genus is discussed and a key to all species from the genus was added.
Les nématodes de la famille des Epsilonematidae se caractérisent par un corps en forme d’epsilon et par la présence de soies ambulatoires servant à la mobilité. Des représentants de cette famille ont récemment été découverts en environnement marin profond, notamment au niveau des récifs de coraux d’eau froide et des monts sous-marins. La nouvelle espèce Akanthepsilonema oceanopolis (Nematoda : Epsilonematidae) est décrite des sédiments du mont sous-marin Condor, situé dans l’Atlantique nord-est, collectés à 206 m de profondeur. Ses principaux caractères sont la présence d’une cuticule hétérogène munie de grandes épines dorsales recourbées, à la fois dans les régions antérieure et postérieure ; la présence de quatre paires de soies subcéphaliques disposées en deux rangées et un ratio diamètre maximal/diamètre minimal du corps supérieur à deux. La position taxinomique de cette espèce au sein du genre Akanthepsilonema est discutée et une clé des espèces connues du genre est donnée.
An aod - les cahiers naturalistes de l’Observatoire marin (2263-5718) (Editions de l’institut Universitaire Européen de la Mer), 2014 , Vol. 3 , N. 1 , P. 1-10

Droits : Editions de l’institut Universitaire Européen de la Mer
http://archimer.ifremer.fr/doc/00199/31050/29470.pdf
http://archimer.ifremer.fr/doc/00199/31050/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
ISSN: 0098-0331

hal-01083748
https://hal-agroparistech.archives-ouvertes.fr/hal-01083748
DOI : 10.1007/s10886-009-9673-x

Éditeur(s) : HAL CCSD
Résumé : International audience
The host-parasite genera Proformica-Rossomyrmex present four pairs of species with a very wide range of distribution from China to Southeastern Spain, from huge extended plains to the top of high mountains. Here we review (1) the published data on these pairs in comparison to other slave-makers; (2) the different dispersal ability in hosts and parasites inferred from genetics (chance of migration conditions the evolutionary potential of the species); (3) the evolutionary potential of host and parasite determining the coevolutionary process in each host-parasite system that we treat to define using cuticular chemical data. We find a lower evolutionary potential in parasites than in hosts in fragmented populations, where selective pressures give advantage to a limited female parasite migration due to uncertainty of locating a host nest. A similar evolutionary potential is detected for hosts and parasites when the finding of host nests is likely (i.e., in continuous and extended populations). Moreover, some level of local adaptation at CHC profiles between host and parasite exists independently of the kind of geographic distribution and the ability of dispersal of the different populations. Similarity at CHC profiles appears to be a trait imposed by natural selection for the interaction between hosts and slave-makers.
Psyche

hal-01322574
https://hal.archives-ouvertes.fr/hal-01322574
DOI : 10.1155/2013/541804