Éditeur(s) : Université des Antilles LABEX CORAIL BOREA : Biologie des Organismes et Écosystèmes Aquatiques
Extrait de : "Les récifs coralliens et le littoral de demain" : séminaire, le 22 mai 2019. Université des Antilles
Description : Dans les récifs coralliens, des habitats distants de moins d'un kilomètre présentent des signatures spécifiques pouvant servir de repères aux larves de nombreuses espèces de poissons récifaux mais également de coraux bâtisseurs. La modification, l'altération et la destruction des récifs et des zones de nurseries du littoral iront donc de paires avec la modification des signatures acoustiques associées. La perturbation des repères acoustiques menace la diversité et la stabilité des populations ichtyologiques et de l'environnement récifal dans son ensemble. Pour la première fois en Guadeloupe, dans le cadre du projet EMuL (LABEX CORAIL), une approche de suivi en acoustique passive va être menée pour caractériser les signatures acoustiques du littoral et l'impact des activités humaines sur la diversité récifale.

Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V19098
V19098

Extrait de : Saint-Pierre-Martinique 1635-1902 : Annales des Antilles françaises - Journal et album de la Martinique, naissance, vie et mort de la cité créole - livre d'or de la charité (p. 192)
Résumé : Photographie des ruines de la cathédrale Saint-Louis ainsi que des maisons aux alentours
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Université des Antilles et de la Guyane. Service commun de la documentation
Permalien : http://www.manioc.org/images/HASH0138413c3457b7557e2940c0
HASH0138413c3457b7557e2940c0

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The mangrove swamp environment constitutes a sulphide rich habitat harbouring some thioautotrophic organisms. The ciliate Zoothamnium niveum and the nematode Eubostrichus dianae, both known to live associated with bacterial sulphide-oxidizing ectosymbionts, were analysed as positive controls by Raman microspectrometry. The detection of the 3 Raman bands characteristic of elemental sulphur (S8) allows us to define a positive model of sulphide-oxidizing symbiotic invertebrates and by extrapolation, of thioautotrophic organisms. A fast screening using this tool was carried out on eukaryotic organisms such as hydrozoan, nematodes, annelids, copepods, and ciliate (Pseudovorticella sp.) and on free-living filamentous bacteria found on decomposing leaves in order to detect thioautotrophic organisms. The Raman microspectrometry permits us: (i) to reveal thioautotrophic metabolism of free-living bacteria (Beggiatoa sp.) and even for Archaea and (ii) to detect sulphide-oxidizing endosymbiotic and ectosymbiotic bacteria associated with the Bivalve Lucina pectinata and Pseudovorticella sp., respectively. Raman microspectrometry represents a fast, easy and non destructive technique which can be used on living organisms without constraints of sample size. The Raman analysis can also be completed by ultrastructural analysis (SEM, TEM) on the same sample.
ISSN: 0141-1136

hal-00715329
https://hal.univ-antilles.fr/hal-00715329
DOI : 10.1016/j.marenvres.2010.02.001

Éditeur(s) : HAL CCSD
Résumé : 38 pages
Rapport
The Chicxulub impact crater, México, is unique. It is the only known terrestrial impact structure that has been directly linked to a mass extinction event and the only terrestrial impact with a global ejecta layer. Of the three largest impact structures on Earth, Chicxulub is the best preserved. Chicxulub is also the only known terrestrial impact structure with an intact, unequivocal topographic peak ring. Chicxulub’s role in the Cretaceous/Paleogene (K-Pg) mass extinction and its exceptional state of preservation make it an important natural laboratory for the study of both large impact crater formation on Earth and other planets and the effects of large impacts on the Earth’s environment and ecology. Our understanding of the impact process is far from complete, and despite more than 30 years of intense debate, we are still striving to answer the question as to why this impact was so catastrophic.During International Ocean Discovery Program (IODP) Expedition 364, Paleogene sediments and lithologies that make up the Chicxulub peak ring were cored to investigate (1) the nature and formational mechanism of peak rings, (2) how rocks are weakened during large impacts, (3) the nature and extent of post-impact hydrothermal circulation, (4) the deep biosphere and habitability of the peak ring, and (5) the recovery of life in a sterile zone. Other key targets included sampling the transition through a rare midlatitude section that might include Eocene and Paleocene hyperthermals and/or the Paleocene/Eocene Thermal Maximum (PETM); the composition and character of the impact breccias, melt rocks, and peak-ring rocks; the sedimentology and stratigraphy of the Paleocene–Eocene Chicxulub impact basin infill; the chronology of the peak-ring rocks; and any observations from the core that may help us constrain the volume of dust and climatically active gases released into the stratosphere by this impact. Petrophysical property measurements on the core and wireline logs acquired during Expedition 364 will be used to calibrate geophysical models, including seismic reflection and potential field data, and the integration of all the data will calibrate impact crater models for crater formation and environmental effects. The proposed drilling directly contributes to IODP Science Plan goals:Climate and Ocean Change: How resilient is the ocean to chemical perturbations? The Chicxulub impact represents an external forcing event that caused a 75% level mass extinction. The impact basin may also record key hyperthermals within the Paleogene.Biosphere Frontiers: What are the origin, composition, and global significance of subseafloor communities? What are the limits of life in the subseafloor? How sensitive are ecosystems and biodiversity to environmental change? Impact craters can create habitats for subsurface life, and Chicxulub may provide information on potential habitats for life, including extremophiles, on the early Earth and other planetary bodies. Paleontological and geochemical studies at ground zero will document how large impacts affect ecosystems and effects on biodiversity.Earth Connections/Earth in Motion: What are the composition, structure and dynamics of Earth’s upper mantle? What mechanisms control the occurrence of destructive earthquakes, landslides, and tsunami? Mantle uplift in response to impacts provides insight into dynamics that differ between Earth and other rocky planets. Impacts generate earthquakes, landslides, and tsunami, and scales that generally exceed plate tectonic processes yield insight into effects, the geologic record, and potential hazards.IODP Expedition 364 was a Mission Specific Platform expedition to obtain subseabed samples and downhole logging measurements from the sedimentary cover sequence and peak ring of the Chicxulub impact crater. A single borehole was drilled into the Chicxulub impact crater on the Yucatán continental shelf, recovering core from 505.7 to 1334.73 m below seafloor with ~99% core recovery and acquiring downhole logs for the entire depth.
International Ocean Discovery Program

hal-01639520
https://hal.archives-ouvertes.fr/hal-01639520
DOI : 10.14379/iodp.pr.364.2017

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project - and avert - future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups - including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - ). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.
ISSN: 2045-7758

hal-01204216
https://hal.archives-ouvertes.fr/hal-01204216
DOI : 10.1002/ece3.1303
PRODINRA : 280886

Éditeur(s) : Public Library Science
Résumé : Observing spatial and temporal variations of marine biodiversity from non-destructive techniques is central for understanding ecosystem resilience, and for monitoring and assessing conservation strategies, e.g. Marine Protected Areas. Observations are generally obtained through Underwater Visual Censuses (UVC) conducted by divers. The problems inherent to the presence of divers have been discussed in several papers. Video techniques are increasingly used for observing underwater macrofauna and habitat. Most video techniques that do not need the presence of a diver use baited remote systems. In this paper, we present an original video technique which relies on a remote unbaited rotating remote system including a high definition camera. The system is set on the sea floor to record images. These are then analysed at the office to quantify biotic and abiotic sea bottom cover, and to identify and count fish species and other species like marine turtles. The technique was extensively tested in a highly diversified coral reef ecosystem in the South Lagoon of New Caledonia, based on a protocol covering both protected and unprotected areas in major lagoon habitats. The technique enabled to detect and identify a large number of species, and in particular fished species, which were not disturbed by the system. Habitat could easily be investigated through the images. A large number of observations could be carried out per day at sea. This study showed the strong potential of this non obtrusive technique for observing both macrofauna and habitat. It offers a unique spatial coverage and can be implemented at sea at a reasonable cost by non-expert staff. As such, this technique is particularly interesting for investigating and monitoring coastal biodiversity in the light of current conservation challenges and increasing monitoring needs.
Plos One (1932-6203) (Public Library Science), 2012-02 , Vol. 7 , N. 2 , P. -

Droits : 2012 Pelletier et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License
http://archimer.ifremer.fr/doc/00078/18879/16453.pdf
DOI:10.1371/journal.pone.0030536
http://archimer.ifremer.fr/doc/00078/18879/

Éditeur(s) : HAL CCSD Société nationale de protection de la nature
Résumé : International audience
The island of Moorea in French Polynesia is representative of a relatively well preserved small tropical oceanic island but both its terrestrial and marine ecosystems are currently under strong anthropogenic pressures. The terrestrial ecosystems are facing an increasing urbanization, and the destruction and modification of their natural habitats by cultivation and forestry plantations, accidental or intentional fires, and particularly by the invasion of alien plant and animal species. Coastal areas and reef ecosystems are threatened by shoreline artificialization, sedimentation due to soil erosion, increasing uses of marine and lagoon resources and frequency of coral bleaching events. A significant erosion of terrestrial and marine biodiversity is observed on the island since the last decades. In the context of the Land Management Plan (PGA) and Marine Area Management Plan (PGEM) recently set up in the island by local authorities, scientific surveys and inventories were made in 2006 in order to assess the status of terrestrial biodiversity (vascular plants) and marine biodiversity (reef fishes) and compare areas with different anthropogenic pressures. Studies conducted on the flora and the vegetation at low and middle elevation along altitudinal transects show that the plant invasion process is related to climatic and topographic factors, and species autoecology. The marine study aims to compare the protected areas with control areas in order to test the effectiveness of protection measures and to propose a streamlined monitoring protocol. A methodological study in both terrestrial and marine ecosystems was conducted in order to propose biodiversity indicators which are crucial for decision making in conservation and sustainable development of island biodiversity. We used Geographic Information System (GIS) as a fast and intuitive tool for mapping indicators and their variability. This methodological approach developed on the island of Moorea could be used as a model for other tropical islands
Moorea est une petite île océanique tropicale de la Polynésie française relativement bien préservée, mais dont les écosystèmes terrestres et marins sont actuellement soumis à de fortes pressions anthropiques. Le milieu terrestre est confronté à une urbanisation croissante, à la destruction ou à la modification des habitats naturels pour l’extension des cultures ou des plantations forestières, aux incendies volontaires ou accidentels, et particulièrement à l’invasion d’espèces végétales et animales introduites. Les zones côtières et les récifs coralliens sont menacés par de multiples perturbations telles que l’artificialisation des lignes de rivage, l’apport de sédiments dus à l’érosion des sols, l’augmentation des usages des ressources marines et lagonaires et de la fréquence des phénomènes de blanchissement du corail. Une érosion sensible de la biodiversité terrestre et marine de l’île est observée depuis les dernières décennies. Dans le cadre du Plan Général d’Aménagement (PGA) et du Plan de Gestion de l’Espace Maritime (PGEM) mis en place par les autorités locales, des inventaires scientifiques ont été réalisés en 2006 dans le but d’évaluer l’état de la biodiversité terrestre (plantes vasculaires) et marine (poissons récifaux) et de comparer des zones soumises à différentes perturbations. Les études réalisées sur la flore et la végétation de basse et moyenne altitude le long de transects altitudinaux montrent des processus d’invasion végétale différents en relation avec les facteurs climatiques, topographiques et autoécologiques des espèces. Les études en milieu marin visent à comparer des aires protégées à des aires témoins afin de suivre l’efficacité des mesures de gestion. La réflexion méthodologique menée parallèlement sur les deux écosystèmes a pour but d’illustrer différents indices de biodiversité nécessaires à la prise de décision en matière de conservation ou de développement durable de la biodiversité insulaire et de réaliser un état de référence pour établir un diagnostic sur l’état de la biodiversité. La représentation cartographique des indices à l’aide d’un SIG, illustrée dans cette étude avec la richesse spécifique terrestre et marine, permet une lecture intuitive et rapide de la variabilité de cet indice dont la restitution est basée sur une standardisation du nombre d’espèces. Cette approche méthodologique développée sur l’île de Moorea pourrait servir de modèle pour d’autres îles tropicales
EISSN: 2429-6422

hal-01306285
https://hal-univ-perp.archives-ouvertes.fr/hal-01306285

Éditeur(s) : HAL CCSD
Résumé : Neotropical forests shelter an astonishing and underrated biodiversity. The integrity and stability of these natural ecosystems are threatened by human-induced environmental changes. Therefore, highlighting the determinants of ecosystem functioning, be they natural or anthropogenic, is a daunting but paramount scientific challenge. The intrinsic complexity of highly diversified ecosystems arouses both conceptual and logistical difficulties, which we handle, by manipulating tiny ecosystems, the tank bromeliads. The leaves of tank bromeliads form wells that hold rainwater and intercept leaf litter, allowing for a simple invertebrate aquatic community to thrive. These plants can be exhaustively sampled, are naturally replicated, and widely distributed.From local to biogeographic scales, this thesis aims at understanding how these communities respond to the natural heterogeneity of Amazonian forests, and at predicting the impacts of human-induced disturbances on the structure and functioning of these communities, using in situ and lab experiments. Particular focus is attributed to the influence of some aspects of climate changes (e.g., warming, and various precipitations scenarios) on individual physiology, behavior, and trophic interactions.
Les forêts néotropicales accueillent une importante biodiversité encore méconnue. L’intégrité des écosystèmes naturels est menacée par les changements environnementaux (e.g., réchauffement climatique, destruction des habitats), par conséquent, identifier les facteurs structurants, naturels et anthropiques, du fonctionnement des écosystèmes, représente un défi scientifique crucial. L’inhérente complexité de ces milieux diversifiés pose de nombreux problèmes conceptuels et logistiques comme un échantillonnage exhaustif et/ou l’identification des espèces. Les broméliacées à réservoirs sont des écosystèmes miniatures adéquats pour pallier ces difficultés, car elles retiennent de l’eau de pluie et accumulent de la matière organique au creux de leurs feuilles, permettant ainsi de supporter des réseaux trophiques simples d’invertébrés aquatiques. Elles peuvent être échantillonnées exhaustivement, ont une forte abondance locale, et une large aire de répartition. De l’échelle locale à biogéographique, les travaux de cette thèse visent d’abord à comprendre comment ces communautés se structurent en réponse à l’hétérogénéité naturelle des forêts amazoniennes (e.g., ouverture de la canopée, fluctuations climatiques saisonnières), puis tente de prédire, par le biais d’expérimentations in situ et au laboratoire les réponses structurelles et fonctionnelles de ces communautés à divers scénarios de changement climatique. Une attention particulière a été portée sur l’impact de la température et des précipitations sur la physiologie et le comportement d’espèces clefs, et sur les interactions trophiques au sein des communautés.
https://tel.archives-ouvertes.fr/tel-01405025

NNT : 2015YANE0003
tel-01405025
https://tel.archives-ouvertes.fr/tel-01405025
https://tel.archives-ouvertes.fr/tel-01405025/document
https://tel.archives-ouvertes.fr/tel-01405025/file/These-DEZERALD-Diffusion.pdf

Éditeur(s) : Inter-Research
Résumé : The green turtle Chelonia mydas is classified as endangered because of global declines over the past few centuries due to human exploitation and habitat destruction, particularly the loss of nesting areas. We used the number of tracks as an indicator of breeding female abundance at their nesting sites to study the seasonality and trends of turtles breeding at 3 islands in the SW Indian Ocean: Europa, Tromelin and Grande Glorieuse, over 20 yr. On Tromelin, tracks were counted along the entire nesting beach, but on Europa and Grande Glorieuse counts were limited to a proportion of the island. Europa and Tromelin exhibited similar seasonal patterns, with a well-defined peak during the wet season (November–February), compared to a dry season peak for Grande Glorieuse (March–June). The main season was significantly longer on Grande Glorieuse (288 ± 43 d) than on Europa (218 ± 60 d), with Tromelin intermediate (252 ± 43 d). There was greater variation in the start of a season compared to the median and end at all sites throughout the study. Approximately 7178 ± 3053 (n = 19) tracks were recorded annually on the entire nesting beach on Tromelin, compared with 1480 ± 666 (n = 19) on 16% of nesting beaches on Grande Glorieuse and 1361 ± 903 (n = 23) on 26% of beaches on Europa. The number of tracks has increased significantly on Europa (3% yr–1) and Grande Glorieuse (6% yr–1). The increasing number of nesting turtles illustrates the effectiveness of conservation measures on sites formerly exploited by humans.
Endangered Species Research (1613-4796) (Inter-Research), 2007-08-15 , Vol. 3 , P. 217-227

Droits : 2007 Inter-Research
http://archimer.ifremer.fr/doc/00018/12917/9874.pdf
DOI:10.3354/esr003217
http://archimer.ifremer.fr/doc/00018/12917/

Éditeur(s) : Elsevier Science Bv
Résumé : Monitoring fish and underwater habitats, particularly in and around marine protected areas (MPAs) requires non-destructive observation methods. This is generally achieved by divers conducting underwater visual censuses (UVC), but video-based techniques are now being used more often to observe underwater macrofauna and habitats. A comparison of these two techniques is relevant with the development of high-definition (HD) video, which constitutes a substantial improvement over previously available video resolutions at limited extra cost. We conducted a paired observation experiment involving both HD video and UVC in an MPA located in the New Caledonian lagoon, which is a highly diversified coral reef ecosystem. We compared three techniques for counting fish along 50 m x 4 m delineated strip transects: UVC and two video techniques in which the diver used either a straight trajectory (I-type transect) or a browsing one (S-type transect). The results showed that the proportion of fish that were not identified up to the species level did not exceed 3.3% in video observations versus 1.7% in UVC. The abundance and species richness were larger in UVC than in videos, and S-type transects detected more individuals and species than I-type transects. The average abundance and species richness observed by UVC were 1094 individuals and 69.7 species per transect respectively. In comparison with UVC. I-type and S-type video transects detected on average 56% and 61% of the abundance and 85% and 77% of the species richness seen by UVC respectively. Our results showed that, in comparison to UVC data recorded in situ, the post field analysis of HD video images provided representative observations of fish abundance and species diversity, although fewer species and individuals were detected. The advantages and shortcomings of each observation technique for monitoring fish assemblages, particularly in an MPA are discussed. HD video appears to be a cost-effective technique in terms of the human resources and time needed for field implementation. Overall, this study suggests that HD video-based techniques constitute an interesting complement to UVC, or an alternative when these cannot be implemented. (C) 2010 Elsevier B.V. All rights reserved.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2011-01 , Vol. 107 , N. 1-3 , P. 84-93

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00031/14192/11470.pdf
DOI:10.1016/j.fishres.2010.10.011
http://archimer.ifremer.fr/doc/00031/14192/

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
Overfishing and habitat destruction due to local and global threats are undermining fisheries, biodiversity, and the long-term sustainability of tropical marine ecosystems worldwide, including in the Coral Triangle. Well-designed and effectively managed marine reserve networks can reduce local threats, and contribute to achieving multiple objectives regarding fisheries management, biodiversity conservation and adaptation to changes in climate and ocean chemistry. Previous studies provided advice regarding ecological guidelines for designing marine reserves to achieve one or two of these objectives. While there are many similarities in these guidelines, there are key differences that provide conflicting advice. Thus, there is a need to provide integrated guidelines for practitioners who wish to design marine reserves to achieve all three objectives simultaneously. Scientific advances regarding fish connectivity and recovery rates, and climate and ocean change vulnerability, also necessitate refining advice for marine reserve design. Here we review ecological considerations for marine reserve design, and provide guidelines to achieve all three objectives simultaneously regarding: habitat representation; risk spreading; protecting critical, special and unique areas; reserve size, spacing, location, and duration; protecting climate resilient areas; and minimizing and avoiding threats. In addition to applying ecological guidelines, reserves must be designed to address social and governance considerations, and be integrated within broader fisheries and coastal management regimes.
ISSN: 0892-0753

hal-01333534
https://hal-univ-perp.archives-ouvertes.fr/hal-01333534
DOI : 10.1080/08920753.2014.877763

Éditeur(s) : HAL CCSD Thai Society of Higher Education Institutes on Environment
Résumé : International audience
Due to the high level of endemic species that they support and the high threats they are facing, such as unsustainable limestone quarrying, hunting and urbanization, limestone karsts are recognized as biodiversity hotspots needing urgent protection. The first aim of our study was to investigate the mammal rodent diversity of Thai limestone karsts. Our second aim was to examine the diversity at a finer scale than the species level (intraspecific biodiversity) using phylogeographic approaches. Therefore, we studied the phylogeographic structure of a threatened rodent, endemic to limestone karsts of Thailand, the Murinae Leopoldamys neilli. We sampled 76 limestone karsts in whole Thailand and live-trapped 444 rodents including 115 Leopoldamys neilli. Our study revealed an important rodent diversity in Thai limestone karsts. Besides endemic rodent species, karsts also host typical forest species to which they provide forest refugia in deforested regions. At the intraspecific level, our study revealed an unexpected high level of genetic differentiation within the rodent species L. neilli. As each limestone area of Thailand is characterized by a particular genetic lineage of L. neilli, the destruction of these karsts would lead to the disappearance of unique intraspecific strains not found elsewhere. Our results highlight the importance of protecting limestone habitats to preserve not only their interspecific but also intraspecific rodent diversity that is highly threatened as more than 20% of limestone karsts in Thailand have already been quarried. Management plans of limestone, a non-renewable resource, should urgently take into account this high biological importance of karsts.
The 1st EnvironmentAsia International Conference on "Environmental Supporting in Food and Energy Security: Crisis and Opportunity"
Bangkok, Thailand

ird-00714455
http://hal.ird.fr/ird-00714455
http://hal.ird.fr/ird-00714455/document
IRD : fdi:010056152