Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We use velocities from 65 continuous stations and 31 survey-mode GPS sites as well as kinematic modeling to investigate present day deformation along the Africa-Iberia plate boundary zone in the western Mediterranean region. The GPS velocity field shows southwestward motion of the central part of the Rif Mountains in northern Morocco with respect to Africa varying between 3.5 and 4.0 mm/yr, consistent with prior published results. Stations in the southwestern part of the Betic Mountains of southern Spain move west-southwest with respect to Eurasia (similar to 2-3 mm/yr). The western component of Betics motion is consistent with partial transfer of Nubia-Eurasia plate motion into the southern Betics. The southward component of Betics motion with respect to Iberia is kinematically consistent with south to southwest motion of the Rif Mountains with respect to Africa. We use block modeling, constrained by mapped surface faults and seismicity to estimate the geometry and rates of strain accumulation on plate boundary structures. Our preferred plate boundary geometry includes one block between Iberia and Africa including the SW Betics, Alboran Sea, and central Rif. This geometry provides a good fit to the observed motions, suggesting a wide transpressive boundary in the westernmost Mediterranean, with deformation mainly accommodated by the Gloria-Azores fault system to the West and the Rif-Tell lineament to the East. Block boundaries encompass aspects of earlier interpretations suggesting three main deformation styles: (i) extension along the NE-SW trending Trans-Alboran shear zone, (ii) dextral strike-slip in the Betics corresponding to a well defined E-W seismic lineament, and (iii) right lateral strike-slip motion extending West to the Azores and right-lateral motion with compression extending East along the Algerian Tell. We interpret differential motion in the Rif-Alboran-Betic system to be driven both by surface processes related the Africa-Eurasia oblique convergence and sub-crustal dynamic processes associated with the long history of subduction of the Neotethys ocean lithosphere. The dextral slip identified in the Betic Mountains in Southern Spain may be related to the offshore fault that produced the Great 1755 Lisbon Earthquake, and as such may represent a significant seismic hazard for the West Mediterranean region.
ISSN: 0012-821X

hal-00618337
https://hal.archives-ouvertes.fr/hal-00618337
DOI : 10.1016/j.epsl.2011.05.048

Éditeur(s) : HAL CCSD
Résumé : International audience
Fish is a rich source of essential nutrients for fetal development, but in contrast, it is also a well-known route of exposure to environmental pollutants. We assessed whether fish intake during pregnancy is associated with fetal growth and the length of gestation in a panel of European birth cohort studies. The study sample of 151,880 mother-child pairs was derived from 19 population-based European birth cohort studies. Individual data from cohorts were pooled and harmonized. Adjusted cohort-specific effect estimates were combined by using a random- and fixed-effects meta-analysis. Women who ate fish >1 time/wk during pregnancy had lower risk of preterm birth than did women who rarely ate fish (≤ 1 time/wk); the adjusted RR of fish intake >1 but <3 times/wk was 0.87 (95% CI: 0.82, 0.92), and for intake ≥ 3 times/wk, the adjusted RR was 0.89 (95% CI: 0.84, 0.96). Women with a higher intake of fish during pregnancy gave birth to neonates with a higher birth weight by 8.9 g (95% CI: 3.3, 14.6 g) for >1 but <3 times/wk and 15.2 g (95% CI: 8.9, 21.5 g) for ≥ 3 times/wk independent of gestational age. The association was greater in smokers and in overweight or obese women. Findings were consistent across cohorts. This large, international study indicates that moderate fish intake during pregnancy is associated with lower risk of preterm birth and a small but significant increase in birth weight.
The American Journal of Clinical Nutrition

hal-01118513
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118513
PUBMED : 24335057
DOI : 10.3945/ajcn.113.067421