Éditeur(s) : HAL CCSD European Respiratory Society
Résumé : International audience
Telomerase reverse transcriptase (TERT) or telomerase RNA (TERC) gene mutation is a major monogenic cause of pulmonary fibrosis. Sequencing of TERT/TERC genes is proposed to patients with familial pulmonary fibrosis. Little is known about the possible predictors of this mutation and its impact on prognosis. We retrospectively analysed all the genetic diagnoses made between 2007-2014 in patients with pulmonary fibrosis. We evaluated the prevalence of TERT/TERC disease-Associated variant (DAV), factors associated with a DAV, and the impact of the DAV on survival. 237 patients with pulmonary fibrosis (153 with familial pulmonary fibrosis, 84 with telomere syndrome features without familial pulmonary fibrosis) were tested for TERT/TERC DAV. DAV was diagnosed in 40 patients (16.8%), including five with non-idiopathic interstitial pneumonia. Prevalence of TERT/TERC DAV did not significantly differ between patients with familial pulmonary fibrosis or with only telomere syndrome features (18.2% versus 16.4%). Young age, red blood cell macrocytosis, and low platelet count were associated with the presence of DAV; the probability of DAV was increased for patients 40-60 years. Transplant-free survival was lower with than without TERT/TERC DAV (4.2 versus 7.2 years; p=0.046). TERT/TERC DAV were associated with specific clinical and biological features and reduced transplantfree survival. ©ERS 2016.
ISSN: 0903-1936

hal-01467555
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467555
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467555/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467555/file/Prevalence%20and%20characteristics%20of%20TERT.pdf
DOI : 10.1183/13993003.02115-2015

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
[1] Zircons and monazites from 6 samples of the North Ayilari dextral shear zone (NAsz), part of the Karakorum fault zone (KFZ), have been dated with the U-Th-Pb method, using both ID-TIMS and SIMS techniques. The ages reveal (1) inheritance from several events spanning a long period between the late Archean and the Jurassic; (2) an Eocene-Oligocene magmatic event (similar to 35-32 Ma); (3) an Oligo-Miocene magmatic event (similar to 25-22 Ma), at least partly synkinematic to the right-lateral deformation; and (4) a period of metamorphism metasomatism (similar to 22-14 Ma) interpreted as thermal and fluid advection in the shear zone. The Labhar Kangri granite located similar to 375 km farther Southeast along the KFZ is dated at 21.1 +/- 0.3 Ma. Such occurrence of several Oligo-Miocene granites along the KFZ, some of which show evidence for synkinematic emplacement, suggests that the fault zone played an important role in the genesis and /or collection of crustal melts. We discuss several scenarios for the onset and propagation of the KFZ, and offset estimates based on the main sutures zones. Our preferred scenario is an Oligo-Miocene initiation of the fault close to the NA range, and propagation along most of its length prior to similar to 19 Ma. In its southern half, the averaged long-term fault-rate of the KFZ is greater than 8 to 10 mm/a, in good agreement with some shorter-term estimates based on the Indus river course, or Quaternary moraines and geodesy. Our results show the KFZ cannot be considered as a small transient fault but played a major role in the collision history.
ISSN: 0278-7407

hal-00412570
https://hal.archives-ouvertes.fr/hal-00412570
DOI : 10.1029/2007TC002184

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ISSN: 0168-583X

hal-01685821
https://hal.univ-antilles.fr/hal-01685821
DOI : 10.1016/0168-583X(90)90683-L

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
To test the impact of fluid flow on the reactivity of porous (ultra-)mafic rocks, reactive percolation experiments were realized during which CO2-enriched water was injected at two different injection rates (Q = 0.1 and 1 mL h−1) through sintered analogues of olivine-accumulation zones in basaltic flows at temperature and fluid composition conditions (T = 180 °C; NaHCO3 buffered solution) favorable for CO2-mineralization (carbonation).All experiments resulted in silicate dissolution, carbonate precipitation upstream and (proto-)serpentine formation downstream indicating a decrease in the fluid reactivity along flow paths. The measured bulk carbonation rates ranged from 4 to 7 × 10−8 s−1; these values were significantly lower than previously published values of olivine carbonation rate obtained on powders in closed batch and flow-through reactors. Our study show complex couplings, at pore scale, between fluid flow, localization of reaction zones, and chemical reaction kinetics which in turn control hydrodynamic properties, carbonation rate and efficiency and fluid reactivity. This results in carbonation rates being higher when injection rates are high and permeability ultimately controlling carbonation reactions by limiting fluid input. During experiments, notable changes in permeability occurred for only minor changes in porosity indicating a control by the geometry of the porous network: heterogeneities in the distribution of flow paths favored the localization of precipitated minerals which in turn resulted in the closure of flow paths. This mechanism was particularly efficient at low injection rates. These results imply that controlling the injection rate could allow enhancing/limiting the efficiency of in situ carbonation.
ISSN: 0883-2927

hal-01115284
https://hal.archives-ouvertes.fr/hal-01115284
DOI : 10.1016/j.apgeochem.2014.11.024

Éditeur(s) : HAL CCSD Elsevier
Résumé : High-precision Ni isotopic variations are reported for the metal phase of equilibrated and unequilibrated ordinary chondrites, carbonaceous chondrites, iron meteorites, mesosiderites, and pallasites. We also report new Zn and Cu isotopic data for some of these samples and combine them with literature Fe, Cu, and Zn isotope data to constrain the fractionation history of metals during nebular (vapor/solid) and planetary (metal/sulfide/silicate) phase changes. The observed variations of the Ni-62/Ni-58, Ni-61/Ni-58, and Ni-60/Ni-58 ratios vary linearly with mass difference and define isotope fractionation lines in common with terrestrial samples. This implies that Ni was derived from a single homogeneous reservoir. While no Ni-60 anomaly is detected within the analytical uncertainties, Ni isotopic fractionation up to 0.45 parts per thousand per mass-difference unit is observed. The isotope compositions of Ni and Zn in chondrites are positively correlated. We suggest that, in ordinary chondrites, exchange between solid phases, in particular metal and silicates, and vapor followed by mineral sorting during accretion are the main processes controlling these isotopic variations. The positive correlation between Ni and Zn isotope compositions contrasts with a negative correlation between Ni (and Zn) and Cu isotope compositions, which, when taken together, do not favor a simple kinetic interpretation. The observed transition element similarities between different groups of chondrites and iron meteorites are consistent with the genetic relationships inferred from oxygen isotopes (IIIA/pallasites and IVA/L chondrites). Copper is an exception, which we suggest may be related to separate processing of sulfides either in the vapor or during core formation. (C) 2007 Elsevier Ltd. All rights reserved.
ISSN: 0016-7037

hal-00408304
https://hal.archives-ouvertes.fr/hal-00408304
DOI : 10.1016/j.gca.2007.06.049

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Late Jurassic coral reefs are present in the Western High Atlas of Morocco along the eastern paleomargin of the young Atlantic Ocean. The Izwarn section shows two reef units made of scleractinian corals and microbialites, included in a progradational shallowing-upward succession. Changes in reefal composition and structure observed in a ca. 50 cm-thick interval at the base of the reef unit 1 are interpreted to represent the first well-documented ecological succession in Late Jurassic reefs. Bioclastic deposits, sparse and poorly diversified corals (five genera) preserved in life position, and finally a more diversified coral assemblage (11 genera) building a reef framework with stromatolitic crusts reflect pioneer, colonization and diversification stages, respectively. A specific depth window, where light was reduced but sufficient for a catch-up growth mode and below the erosive action of waves, probably at the lower slope of a fore-reef area, has made possible the development and the record of this ecological succession. With a more diversified coral assemblage (16 genera), the reef unit 2 reflects shallower and well-agitated waters of a fore-reef area. Overlaying this second reef unit, the upper part of the section reveals back-reef deposits made of reworked reef elements, whereas a putative reef crest area is not recorded.
ISSN: 0016-6995

hal-00795549
https://hal.archives-ouvertes.fr/hal-00795549
DOI : 10.1016/j.geobios.2012.05.002

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Neonatal infection constitutes one of Senegal’s most important public health problems, with amortality rate of 41 deaths per 1,000 live births.Methods: Between January 2007 and March 2008, 242 neonates with suspected infection were recruited at threeneonatal intensive care units in three major tertiary care centers in Dakar, the capital of Senegal. Neonatal infections wereconfirmed by positive bacterial blood or cerebrospinal fluid culture. The microbiological pattern of neonatal infectionsand the antibiotic susceptibility of the isolates were characterized. In addition, the genetic basis for antibiotic resistanceand the genetic background of third-generation cephalosporin-resistant (3GC-R) Enterobacteriaceae were studied.Results: A bacteriological infection was confirmed in 36.4 % (88/242) of neonates: 22.7 % (30/132) during the early-onsetand 52.7 % (58/110) during the late-onset periods (p > 0.20). Group B streptococci accounted for 6.8 % of the 88 collectedbacterial isolates, while most of them were Enterobacteriaceae (n = 69, 78.4 %). Of these, 55/69 (79.7 %) were 3GC-R. TheblaCTX-M-15 allele, the blaSHV and the blaTEM were highly prevalent (63.5, 65.4 and 53.8 %, respectively), usually associatedwith qnr genes (65.4 %). Clonally related strains of 3GC-R Klebsiella pneumoniae and 3GC-R Enterobacter cloacae, the twomost commonly recovered 3GC-R Enterobacteriaceae (48/55), were detected at the three hospitals, underlining the roleof cross-transmission in their spread. The overall case fatality rate was 18.6 %.Conclusions:Measures should be taken to prevent nosocomial infections and the selection of resistant bacteria
ISSN: 1471-2334

Droits : http://creativecommons.org/licenses/by/
hal-01473613
https://hal.archives-ouvertes.fr/hal-01473613
https://hal.archives-ouvertes.fr/hal-01473613/document
https://hal.archives-ouvertes.fr/hal-01473613/file/High%20third-generation%20cephalosporin%20resistant%20Enterobacteriaceae%20prevalence%20rate%20among%20neonatal%20infections%20in%20Dakar%2C%20Senegal.pdf
DOI : 10.1186/s12879-016-1935-y

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : The role of the Karakorum fault zone (KFZ) is debated. South of 33°N, ongoing dextral-oblique slip along the SW edge of the Gar basin exhumes metamorphic and magmatic rocks of the Ayilari range. Minerals have recorded a continuum of deformation from temperatures >600–400°C down to <250_C. The 40Ar/39Ar ages, the oldest being 21.2 ± 1.0 Ma, yield minimum estimates for the initiation of the KFZ. These are in agreement with the U-Th/Pb ages constraining the onset of deformation at ca 25–22 Ma. Thermochronologic results show slow cooling for the period ca 21– 14 Ma, followed by rapid cooling between 14 and 4 Ma. These data demonstrate that right-lateral motion was in progress in the early Miocene and that shear continued at least until 4 Ma, pointing to >20 Ma of deformation along the fault. Greenschist facies deformation superimposed upon the medium- to high-grade deformation marks a kinematic change from pure dextral to dextral-normal motion associated with the onset of rapid cooling. At the regional scale, the coexistence of transtension in the Gar basin with transpression documented along the Pangong range farther north suggests another example of the ‘‘zipper tectonics'' model developed along the Red River fault. The kinematic shift induced the rise of the Ayilari range starting at 16–12 Ma and the incision of major river courses. The Indus River might have become captive of the relief at this time. The river's 120 km of apparent offset implies dextral motion at a long-term rate of ca 8.5 ± 1.5 mm/yr.
ISSN: 0278-7407

hal-00197561
https://hal.archives-ouvertes.fr/hal-00197561
https://hal.archives-ouvertes.fr/hal-00197561/document
https://hal.archives-ouvertes.fr/hal-00197561/file/Valli_Karakorum_thermochron_Tectonics_07_pre_print.pdf
DOI : 10.1029/2005TC001913

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
In situ mineralization of CO2 in ultramafic rock-hosted aquifers is one of the promising solutions for decreasing CO2 concentrations in the atmosphere. Naturally altered ultramafic rocks suggest that carbonation processes are controlled by local heterogeneities in the structure of the rock and fluid transport at the water-rock interfaces. We studied the role of rock crystallographic anisotropy relative to the global fluid flow direction on the mineralization of CO2 by means of electron microscope analyses from the macro- to the micrometer scale (EBSD-FIB). The sample used for the measurements was a hot pressed olivine core percolated by water enriched in CO2 (pCO2 = 10 MPa) at 180 °C. During the percolation experiment, olivine was dissolved and two types of carbonates, dolomite, and magnesite, were precipitated on olivine surfaces. The results showed that the dissolution of olivine is controlled by its crystallographic properties as shown by the development of etch-pits only on the (010)ol planes and with elongated shapes parallel to the [010]ol axes. In contrast, the precipitation of carbonates is governed by hydrodynamic properties. Carbonates are heterogeneously distributed in the percolated rock. They are mainly located along the moderate (for dolomite) and the minor (for magnesite) flow paths, both oriented parallel to the principal fluid flow direction, which allow carbonates to be supplied with divalent cations (e.g., Ca2+, Mg2+, and Fe2+). In these flow paths, carbonate growth is systematically oriented normal to the flow that facilitates the development of chemical gradients with cationic supersaturation conditions for carbonate precipitation near the walls.In natural systems, the (010)ol planes are parallel to the Moho and the (100)ol planes are vertical; our study suggests that flow of CO2-rich fluids will induce precipitation of carbonates localized along, and preferentially clogging, vertical flow paths while favoring olivine dissolution along horizontal fluid pathways. This dual control of structure and fluid flow on carbonation mechanisms could be an important parameter allowing sustainable CO2 storage in peridotites, while limiting the risks of leakage toward the surface.
ISSN: 0003-004X

hal-01143393
https://hal.archives-ouvertes.fr/hal-01143393
DOI : 10.2138/am-2015-4913

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
This paper presents a paleo-hydrological study conducted on sediment flood deposits at two sites located in the Gardon Gorges, Southeast France. The first study site is a valley‑side terrace (referred to as site GE, located 10m above the channel bed) and the second is located in a cave (referred to as site GG, perched 15m above the bed level). Paleo‑flood events were identified by carefully analyzing each slackwater flood deposits. The flood units were then dated using a variety of dating techniques, namely 137Cs, 210Pbex, 14C geochemical analysis of mining‑contaminated slackwater flood sediments, archeological objects and the historic flood record. Hydraulic modeling was also carried out in order to verify the coherence between the stratigraphic records of flood deposits at the sites and the historic flood levels known along the river Gardon. It is demonstrated that all the major flood events of the 20th century can be identified at terrace GE. This type of geomorphological unit can therefore be used as a sound basis for a paleo-hydrological analysis of the Gardon Gorges. Furthermore, the analysis of the stratigraphic record at site GG demonstrates that the site can be used to trace the largest flood events that have occurred within the past 600 years. The study reveals that the frequency of extreme flood events increased during the Little Ice Age
Une étude paléo-hydrologique a été entreprise dans les Gorges du Gardon, où deux coupes sédimentaires ont été étudiées. La première provient d'une terrasse (coupe GE située à 10 m de hauteur au dessus de la rivière) et l'autre, d'une cavité (coupe GG localisée à 15 m au-dessus de la rivière). L'identification et la mise en évidence des différents paléo-événements de crue ont été établies grâce à l'inspection minutieuse de chaque dépôt sédimentaire et d'une étude géochronologique fine (137Cs, 210Pbex, 14C, métaux traces, objets archéologiques, historiques des crues). Nous avons souhaité évaluer la capacité des terrasses fluviatiles du Gardon à enregistrer des paléo-événements en comparant les coupes sédimentaires aux données historiques des hauteurs d'eau et aux résultats d'un modèle hydraulique 1D. Nous montrons que la terrasse GE enregistre la quasi-totalité des évènements du 20ème siècle et qu'à priori, ce type d'objet géomorphologique peut être utilisé pour toute étude paléo-hydrologique sur le Gardon. De plus, l'étude de la coupe GG (cavité perchée à 15 m) permet de reconstituer les évènements intenses au cours des 600 dernières années. Nous montrons une augmentation des crues extrêmes dans le Haut-Languedoc au cours du "Petit âge glaciaire".
ISSN: 0018-6368

hal-01108400
https://hal.archives-ouvertes.fr/hal-01108400
https://hal.archives-ouvertes.fr/hal-01108400/document
https://hal.archives-ouvertes.fr/hal-01108400/file/ly2014-pub00041935.pdf
DOI : 10.1051/lhb/2014037

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : International audience
ISSN: 1292-3818

hal-01118280
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118280
DOI : 10.1007/s10269-011-1983-2

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Upon subduction, the oceanic crust transforms to blueschists and eclogites, with seismic properties that gradually become similar to those of the surrounding mantle. In order to evaluate the anisotropy of blueschists and glaucophane-bearing eclogites, the elastic constants of glaucophane single-crystal plates from the Sesia-Lanzo Zone (Aosta Valley, Western Alps) were measured using Brillouin spectroscopy at ambient conditions. The mean P- and S-wave velocities are 7.8 and 4.6 km s−1 respectively, and the anisotropy is high (38.1% (AVP) and 27.3% (AVS)). Glaucophane develops strong LPO, characterized by the [001]-axes concentrated sub-parallel to the lineation, and the {110} poles concentrated sub-perpendicular to the foliation in both blueschist and eclogite rocks. The measured LPO is in good agreement with viscoplastic selfconsistent numerical models. Seismic properties of glaucophane-bearing blueschist and eclogite are calculated by combining measured LPO and the single-crystal elastic moduli of glaucophane with the other main mineral constituents of the rock: mostly epidote for blueschist, and omphacite and garnet for eclogite. Blueschists present stronger anisotropies (AVP=16.1% and AVS=10.3%) than eclogites (AVP=2.9% and AVS=1.7%). The shear-wave splitting and resulting delay times for a 7-km thick layer of eclogite or blueschist are low for the eclogite (b0.03 s), but signi!cant for blueschist (0.16 s). Application to the subducted oceanic crust yields a decrease of velocity contrast with the surrounding mantle and of anisotropy at depth depending on the temperature of the slab. The details of the velocity variations in subducted oceanic crust are dif!cult to reconcile with the blueschist-eclogite transition as probed by exhumed metamorphic rocks and may require additional phases such as lawsonite or chemical variations such as oxidation state.
ISSN: 0040-1951

hal-00564518
https://hal.archives-ouvertes.fr/hal-00564518
DOI : 10.1016/j.tecto.2010.09.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ISSN: 0168-583X

hal-01685818
https://hal.univ-antilles.fr/hal-01685818
DOI : 10.1016/0168-583X(91)95793-D

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The increased expression of the Disintegrin and Metalloprotease ADAM12 has been associated with human cancers, however its role remain unclear. We have previously reported that ADAM12 expression is induced by the transforming growth factor, TGF-β and promotes TGF-β-dependent signaling through interaction with the type II receptor of TGF-β. Here we explore the implication of ADAM12 in TGF-β-mediated epithelial to mesenchymal transition (EMT), a key process in cancer progression. We show that ADAM12 expression is correlated with EMT markers in human breast cancer cell lines and biopsies. Using a non-malignant breast epithelial cell line (MCF10A), we demonstrate that TGF-β-induced EMT increases expression of the membrane-anchored ADAM12L long form. Importantly, ADAM12L overexpression in MCF10A is sufficient to induce loss of cell-cell contact, reorganization of actin cytoskeleton, up-regulation of EMT markers and chemoresistance. These effects are independent of the proteolytic activity but require the cytoplasmic tail and are specific of ADAM12L since overexpression of ADAM12S failed to induce similar changes. We further demonstrate that ADAM12L-dependent EMT is associated with increased phosphorylation of Smad3, Akt and ERK proteins. Conversely, inhibition of TGF-β receptors or ERK activities reverses ADAM12L-induced mesenchymal phenotype. Together our data demonstrate that ADAM12L is associated with EMT and contributes to TGF-β-dependent EMT by favoring both Smad-dependent and Smad-independent pathways
ISSN: 1932-6203

hal-01207281
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01207281
DOI : 10.1371/journal.pone.0139179
PUBMED : 26407179

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We determine the elasticity of FeSiO3 perovskite for various spin configurations using density-functional theory calculations. The elastic moduli and the bulk seismic wave velocities are weakly affected by the spin transition. However we show that the intrinsic differences in seismic anisotropy between the high-spin and low-spin phases of Fe-bearing perovskite coupled with lattice preferred orientation that can develop due and during the convection may lead to distinct seismic signatures between the top and the bottom of the lower mantle. These signatures should be detectable in observations and they need to be taken into account in tomographic studies of the Earth's lower mantle.
ISSN: 0094-8276

hal-00512662
https://hal.archives-ouvertes.fr/hal-00512662
DOI : 10.1029/2010GL043320

Éditeur(s) : HAL CCSD National Academy of Sciences
Résumé : International audience
The Isua Supracrustal Belt, Greenland, of Early Archean age (3.81-3.70 Ga) represents the oldest crustal segment on Earth. Its complex lithology comprises an ophiolite-like unit and volcanic rocks reminiscent of boninites, which tie Isua supracrustals to an island arc environment. We here present zinc (Zn) isotope compositions measured on serpentinites and other rocks from the Isua supracrustal sequence and on serpentinites from modern ophiolites, midocean ridges, and the Mariana forearc. In stark contrast to modern midocean ridge and ophiolite serpentinites, Zn in Isua and Mariana serpentinites is markedly depleted in heavy isotopes with respect to the igneous average. Based on recent results of Zn isotope fractionation between coexisting species in solution, the Isua serpentinites were permeated by carbonate- rich, high- pH hydrothermal solutions at medium temperature (100-300 degrees C). Zinc isotopes therefore stand out as a pH meter for fossil hydrothermal solutions. The geochemical features of the Isua fluids resemble the interstitial fluids sampled in the mud volcano serpentinites of the Mariana forearc. The reduced character and the high pH inferred for these fluids make Archean serpentine mud volcanoes a particularly favorable setting for the early stabilization of amino acids.
ISSN: 0027-8424

insu-00674714
https://hal-insu.archives-ouvertes.fr/insu-00674714
DOI : 10.1073/pnas.1108061108

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Field evidence for syn-deformation migmatization and crystallization along the Karakorum fault contradicts the study of Wang et al. (2012). The ages of such magmatic rocks provide minimum ages for the onset of deformation at similar to 23 Ma in North Ayilari and similar to 19 Ma in Tangtse. The onset of deformation at 12 Ma in the Ayilari range inferred by Wang et al. (2012) from a muscovite Ar/Ar age is a cooling age, thus only a minimum age. The similar to 60 Ma granodiorite bodies, the ophiolitic rocks and the south Kailash thrust that are correlated across the fault to provide a 52 +/- 2 km finite offset do not define reliable piercing points. Such observations as well as our previous work concur to show that the Karakorum fault initiated in the Oligo-Miocene, and has a long-term dextral slip-rate between 7.5 and 13 mm/yr, approximately twice that proposed by Wang et al. (2012).
ISSN: 0012-821X

hal-00829469
https://hal.archives-ouvertes.fr/hal-00829469
DOI : 10.1016/j.epsl.2012.12.012

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
BACKGROUND: A prospective study of infectious encephalitis was conducted in France in 2007. In total, 253 patients were enrolled with a proven etiological diagnosis for 52%. The cohort of surviving patients with encephalitis was assessed for sequelae and impairment 3 years after enrollment. METHODS: Patients, their family, and general practitioners (GPs) were interviewed by phone to document persisting symptoms, return to work, and past and current leisure activities, with standardized questionnaires. The IQCODE (Informant Questionnaire on Cognitive Decline in the Elderly) was completed with relatives. The global outcome was determined in all patients with the Glasgow outcome scale. RESULTS: In 2010, 20 patients (10%) were unavailable for follow-up, 2 (1%) were excluded, and 18 (9%) had died since hospital discharge. Data were available for 167 survivors and 9 patients whose death was related to the encephalitis. The outcome was favorable in 108 of 176 patients (61%) (71 with complete resolution), 31 (18%) were mildly impaired, 25 (14%) were severely impaired, and 3 (1%) were in a vegetative state. The most frequent symptoms were difficulty concentrating (42%), behavioral disorders (27%), speech disorders (20%), and memory loss (19%). Fifteen of 63 patients (24%) previously employed were still unable to resume work. Long-term outcome was significantly associated with comorbid conditions, age, level of education, and the causative agent of encephalitis. CONCLUSIONS: Most patients with encephalitis experienced a favorable outcome 3 years after hospital discharge. However, minor to severe disability persists in a high number of cases with consequences for everyday life. Physical and mental impairment should be evaluated in all patients with encephalitis, and neuropsychological rehabilitation implemented whenever needed.
ISSN: 1058-4838

hal-00875190
https://hal.archives-ouvertes.fr/hal-00875190
DOI : 10.1093/cid/cis226
PUBMED : 22460967

Éditeur(s) : HAL CCSD
Résumé : International audience
Radiocarbon dating and "old wood problem" in the Antilles : the state of the artAmong the many effects that may distort the interpretation of radiocarbon dates are those for which the age of the archaeological event is different from the radiocarbon age of the sample or "14C event" age. This type of problem arises in many cases, notably in the "old wood effect”, and occurs in various regions of the world where very long-lived trees species are common. In the Caribbean anthracological studies indicate a very high frequency of some indigenous centuries-old species such as Guaiacum, Guaiacum officinale L. However the absence of tree-ring data in humid tropical zones deprives us of an accurate inventory of long-lived species and especially the assessment of their longevity. Here we present measurements which enable us to estimate the longevity of archaeological Guaiacum wood posts. They highlight a gap of several centuries between wood from the outer edge and the heart of the tree. This example illustrates the additional uncertainty that can result from dating archeological events when dates are realized on unidentified botanical species from which the area that was sampled is unknown. Another source of error could arise from the use of rot-proof dead wood as fuel if we take into consideration that major hurricanes can produce large amounts of dead wood that may be collected for decades, even centuries. To improve chronometric data used in archaeological interpretations, it is necessary to ensure the quality of the dating process by following a protocol similar to those used in other regions of the world based on a better understanding of the material to be dated by preliminary identifications of wood samples: species, anatomical part, wood moisture content (unseasoned or seasoned).
Radiocarbono y "problema madera vieja", que data de las Antillas: estado del arteEntre los muchos efectos que pueden distorsionar la interpretación de fechas de radiocarbono, destacan aquellos para los que la edad de la prueba arqueológica es diferente de la edad de radiocarbono de la muestra, o la edad del "evento de radiocarbono." Este tipo de problema se presenta en muchos casos, especialmente uno llamado "efecto madera vieja." Esto se refleja en diversas regiones del mundo donde las especies de plantas de mucha longevidad son comunes. En el Caribe, los estudios antracológicos disponibles indican una muy alta frecuencia de algunas especies autóctonas como el guayaco, Guaiacum officinale L. Sin embargo, la casi ausencia de datos de anillos de árboles en los trópicos húmedos, nos impide realizar un inventario exacto de especies de mucha longevidad y sobre todo la evaluación de la longevidad. Algunas de las pruebas presentadas aquí permitieron una estimación de la longevidad de de unos postes de guayaco de origen arqueológico. Ponen de manifiesto una brecha de varios siglos entre las partes externas y el corazón del tronco. Este ejemplo ilustra la aparición de una incertidumbre adicional en la datación de los eventos arqueológicos cuando no conocemos la especie botánica y tampoco la zona de la muestra en el árbol. Otra fuente de error puede surgir de la utilización de la madera muerta de calidad duradera como combustible ya que los grandes huracanes pueden producir grandes cantidades de madera muerta, que puede ser requerida durante décadas, incluso siglos. Para mejorar los datos cronométricos utilizados en interpretaciones arqueológicas, es necesario asegurarse de la calidad de las fechas, y por lo tanto seguir un protocolo similar a los utilizados en otras regiones fundado en una mejor comprensión de los elementos: especie, parte anatómica, humedad de la madera usada (verde o seco).
Parmi les nombreux effets susceptibles de fausser l’interprétation des datations par le radiocarbone, figurent ceux pour lesquels l’âge de l’événement archéologique est différent de l’âge radiocarbone de l’échantillon, ou âge de l’« événement radiocarbone ». Ce type de problème se pose dans de nombreux cas, en particulier celui dénommé « effet vieux bois ». Cette question est prise en compte dans diverses régions du monde où des espèces végétales très longévives sont fréquentes. Dans les Antilles les études anthracologiques disponibles indiquent une fréquence très importante de certaines espèces autochtones multiséculaires dont le gaïac, Guaiacum officinale L.. Cependant, la quasi absence de données dendrochronologiques dans la zone tropicale humide, nous privent d’un inventaire précis des espèces longévives et surtout de l’évaluation de leur longévité. Quelques tests présentés ici ont permis une estimation de la longévité de poteaux d’origine archéologique en bois de gaïac. Ils mettent en évidence un décalage de plusieurs siècles entre les parties externes et le cœur du tronc. Cet exemple illustre l’apparition d’une incertitude supplémentaire dans la datation de l’événement archéologique lorsque que l’on ne connaît ni l’espèce botanique ni la zone de prélèvement dans l’arbre. Une autre source d’erreur pourrait provenir de l’utilisation de bois mort de qualité très durable comme combustible, sachant que les grands cyclones peuvent produire d’importantes quantités de bois mort susceptible d’être récolté pendant des décennies, voire des siècles. Afin d’améliorer les données chronologiques utilisées dans les interprétations archéologiques, il apparaît nécessaire de s’assurer de la qualité des datations, et donc de suivre un protocole similaire à ceux utilisés dans d’autres régions basé sur une meilleure connaissance des éléments datés : espèce, partie anatomique, humidité du bois utilisé (vert ou sec).
Puerto Rico 2013 : Actas del 25to Congreso Internacional de Arqueología del Caribe - Proceeding of the 25th International Congress for Caribbean Archeology - Comptes rendus des communications du 25e Congrés International de l'Archéologie de la Caraïbe
San-Juan, Puerto Rico

hal-01198567
https://hal.archives-ouvertes.fr/hal-01198567
https://hal.archives-ouvertes.fr/hal-01198567/document
https://hal.archives-ouvertes.fr/hal-01198567/file/Stouvenot%20et%20al.%202015.%20Effet%20vieux%20bois%20radiocarbone%20Antilles%20HD.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : Extracting and purifying a representative fraction of bacteria from soil is necessary for the application of many techniques of microbial ecology. Here the influence of different soil types on the quantitative and qualitative recovery of bacteria by soil grinding and Nycodenz density gradient centrifugation was investigated. Three soils presenting contrasted physicochemical characteristics were used for this study. For each soil, the total (AODC: acridine orange direct count) and culturable (cfu: colony-forming units) bacterial densities were measured in three distinct fractions: (i) the primary soil, (ii) the soil pellet (soil remaining after centrifugation), and (iii) the extracted cells. The automated-ribosomal intergenic spacer analysis (A-RISA) was used to characterize the community structure directly from the DNA extracted from each fraction. The physicochemical characteristics of soils were found to influence both the efficiency of bacterial cell recovery and the representativeness of the extracted cells in term of community structures between the different fractions. Surprisingly, the most representative extracted cells were obtained from the soil exhibiting the lowest efficiency of cell recovery. Our results demonstrated that quantitative and qualitative cell recovery using Nycodenz density gradient centrifugation are not necessarily related and could be differentially biased according to soil type.
ISSN: 1164-5563

hal-01031904
https://hal.archives-ouvertes.fr/hal-01031904
DOI : 10.1016/j.ejsobi.2005.08.003