Éditeur(s) : HAL CCSD Instituto de Medicina Tropical
Résumé : International audience
Malaria is a major health problem for people who live on the border between Brazil and French Guiana. Here we discuss Plasmodium vivax distribution pattern in the town of Oiapoque, Amapá State using the circumsporozoite (CS) gene as a marker. Ninety-one peripheral blood samples from P. vivax patients have been studied. Of these, 64 individuals were from the municipality of Oiapoque (Amapá State, Brazil) and 27 patients from French Guiana (August to December 2011). DNA extraction was performed, and a fragment of the P. vivax CS gene was subsequently analyzed using PCR/RFLP. The VK210 genotype was the most common in both countries (48.36% in Brazil and 14.28% in French Guiana), followed by the P. vivax-like (1.10% in both Brazil and French Guiana) and VK247 (1.10% only in Brazil) in single infections. We were able to detect all three CS genotypes simultaneously in mixed infections. There were no statistically significant differences either regarding infection site or parasitaemia among individuals with different genotypes. These results suggest that the same genotypes circulating in French Guiana are found in the municipality of Oiapoque in Brazil. These findings suggest that there may be a dispersion of parasitic populations occurring between the two countries. Most likely, this distribution is associated with prolonged and/or more complex transmission patterns of these genotypes in Brazil, bordering French Guiana.
ISSN: 0036-4665

Droits : http://creativecommons.org/licenses/by-nc/
pasteur-01372566
https://hal-pasteur.archives-ouvertes.fr/pasteur-01372566
https://hal-pasteur.archives-ouvertes.fr/pasteur-01372566/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-01372566/file/1678-9946-rimtsp-58-00072.pdf
DOI : 10.1590/S1678-9946201658072

Éditeur(s) : Elsevier Sci Ltd
Résumé : Time-series studies have reported trophic cascades in land, freshwater and marine environments in many geographic areas. However, the spatial extent of habitats, a key metric of ecosystem structure, has not been mapped in these studies. Marine reserves can provide experimental, before-after and inside-outside (control-impacted), situations for assessing the impact of fishing on ecosystems. We mapped seabed habitats and their associated communities (biotopes) in New Zealand's oldest marine reserve for comparison with pre-reserve maps created about 30 years previously. Areas grazed bare by sea urchins were entirely replaced in the centre of the reserve by kelp, or alga turf, an intermediate biotope between heavily grazed encrusting algae and lightly grazed kelp. Urchins declined following increased abundance and body size of spiny (rock) lobsters and fish (especially snapper) in the reserve but maintained bare rock outside. While this gradient in habitat change matched the gradient of predator abundance, it also matched the extent of reef habitat area. Thus the trophic cascade may be influenced by the effect of habitat on the abundance and behavioural interactions of urchins and their predators. Further ecosystem changes may arise should the abundance of mega-predators, such as seals, cetaceans and large sharks, increase in the region; if parasites become pathogenic; and/or when invasive species reach the reserve. No-take marine reserves provide real-world experiments that show the importance of species in food webs, and the consequences of fishing for ecosystems. Because these changes in ecosystem structure may continue, and will vary with environment, climate and species distributions, reserves need to be permanent and replicated geographically. Habitat maps should be produced for all reserves to enable ecological changes in the ecosystem to be spatially quantified. (C) 2012 Elsevier Ltd. All rights reserved.
Biological Conservation (0006-3207) (Elsevier Sci Ltd), 2012-10 , Vol. 155 , P. 193-201

Droits : 2012 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00107/21842/20067.pdf
DOI:10.1016/j.biocon.2012.05.009
http://archimer.ifremer.fr/doc/00107/21842/

Éditeur(s) : HAL CCSD
Résumé : International audience
Hantaviruses' distribution is reassessed after performing a cladistic analysis on 93 strains isolated from rodents, and one used as out-group: Thottapalayam isolated from a shrew. While most hantaviruses found in wild animals were collected in northern Asia, Europe, North America, and South America, only Thottapalayam and Thailand were found in South and Southeastern Asia. Thottapalayam is highly divergent from the other known hantaviruses and may represent the emerging tip of a different lineage. Serological surveys carried out to detect evidence of Hantavirus in human populations revealed positive samples not only in West and Central Africa but also in Thailand, with a first case recently confirmed. This suggests that Hantaan-related viruses may infect humans out of their well-documented range. Thus, if rodents are probably the primary reservoir, other mammals may be involved in the cycle of hantaviruses. Additional work is needed out of the traditional areas where hantaviruses have been recorded. New viruses, different hosts, and different human syndromes may be discovered in the future mainly in Southeastern Asia and in Africa where Muridae rodents are present and highly diversified.
Annals New York Academy of Sciences

ird-00714427
http://hal.ird.fr/ird-00714427
http://hal.ird.fr/ird-00714427/document
DOI : 10.1196/annals.1373.004
IRD : fdi:010045640

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Increasingly, similarity networks are being used for evolutionary analyses of molecular datasets. These networks are very useful, in particular for the analysis of gene sharing, lateral gene transfer and for the detection of distant homologs. Currently, such analyses require some computer programming skills due to the limited availability of user-friendly freely distributed software. Consequently, although appealing, the construction and analyses of these networks remain less familiar to biologists than do phylogenetic approaches. Results: In order to ease the use of similarity networks in the community of evolutionary biologists, we introduce a software program, EGN, that runs under Linux or MacOSX. EGN automates the reconstruction of gene and genome networks from nucleic and proteic sequences. EGN also implements statistics describing genetic diversity in these samples, for various user-defined thresholds of similarities. In the interest of studying the complexity of evolutionary processes affecting microbial evolution, we applied EGN to a dataset of 571,044 proteic sequences from the three domains of life and from mobile elements. We observed that, in Borrelia, plasmids play a different role than in most other eubacteria. Rather than being genetic couriers involved in lateral gene transfer, Borrelia's plasmids and their genes act as private genetic goods, that contribute to the creation of genetic diversity within their parasitic hosts. Conclusion: EGN can be used for constructing, analyzing, and mining molecular datasets in evolutionary studies. The program can help increase our knowledge of the processes through which genes from distinct sources and/or from multiple genomes co-evolve in lineages of cellular organisms.
ISSN: 1471-2148

hal-01544799
https://hal.archives-ouvertes.fr/hal-01544799
DOI : 10.1186/1471-2148-13-146

Éditeur(s) : HAL CCSD Hindawi Publishing Corporation
Résumé : International audience
HLA-G is a nonclassical major histocompatibility complex molecule first described at the maternal-fetal interface, on extravillous cytotrophoblasts. Its expression is restricted to some tissues in normal conditions but increases strongly in pathological conditions. The expression of this molecule has been studied in detail in cancers and is now also beginning to be described in infectious diseases. The relevance of studies on HLA-G expression lies in the well known inhibitory effect of this molecule on all cell types involved in innate and adaptive immunity, favoring escape from immune control. In this review, we summarize the features of HLA-G expression by type of infections (i.e, bacterial, viral, or parasitic) detailing the state of knowledge for each pathogenic agent. The polymorphism, the interference of viral proteins with HLA-G intracellular trafficking, and various cytokines have been described to modulate HLA-G expression during infections. We also discuss the cellular source of HLA-G, according to the type of infection and the potential role of HLA-G. New therapeutic approaches based on synthetic HLA-G-derived proteins or antibodies are emerging in mouse models of cancer or transplantation, and these new therapeutic tools may eventually prove useful for the treatment of infectious diseases.
ISSN: 2314-8861

hal-01063925
https://hal.archives-ouvertes.fr/hal-01063925
https://hal.archives-ouvertes.fr/hal-01063925/document
https://hal.archives-ouvertes.fr/hal-01063925/file/Immunomodulatory%20Properties%20of%20HLA-G.pdf
DOI : 10.1155/2014/298569

Éditeur(s) : HAL CCSD Instituto de Medicina Tropical
Résumé : International audience
Malaria is a major health problem for people who live on the border between Brazil and French Guiana. Here we discuss Plasmodium vivax distribution pattern in the town of Oiapoque, Amapá State using the circumsporozoite (CS) gene as a marker. Ninety-one peripheral blood samples from P. vivax patients have been studied. Of these, 64 individuals were from the municipality of Oiapoque (Amapá State, Brazil) and 27 patients from French Guiana (August to December 2011). DNA extraction was performed, and a fragment of the P. vivax CS gene was subsequently analyzed using PCR/RFLP. The VK210 genotype was the most common in both countries (48.36% in Brazil and 14.28% in French Guiana), followed by the P. vivax-like (1.10% in both Brazil and French Guiana) and VK247 (1.10% only in Brazil) in single infections. We were able to detect all three CS genotypes simultaneously in mixed infections. There were no statistically significant differences either regarding infection site or parasitaemia among individuals with different genotypes. These results suggest that the same genotypes circulating in French Guiana are found in the municipality of Oiapoque in Brazil. These findings suggest that there may be a dispersion of parasitic populations occurring between the two countries. Most likely, this distribution is associated with prolonged and/or more complex transmission patterns of these genotypes in Brazil, bordering French Guiana.
ISSN: 0036-4665

inserm-01408935
http://www.hal.inserm.fr/inserm-01408935
http://www.hal.inserm.fr/inserm-01408935/document
http://www.hal.inserm.fr/inserm-01408935/file/2016%2C%20Gomes%20-%20Evaluation%20of%20circumsporozoite%20protein%20of%20Plasmodium%20vivax.pdf
DOI : 10.1590/S1678-9946201658072

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
Two cases are reported which illustrate important epidemiological aspects of lymphatic filariasis--prolonged longevity of the adult parasite and the possibility of transmission by individuals with ultra-low level microfilaremia. These cases demonstrate that people can remain carriers of microfilariae in the peripheral blood for many years without reinfection, and even those with a low level microfilaremia can constitute a significant reservoir of mosquito infection. Such cases represent one of the most serious obstacles to the eradication of lymphatic filariasis in regions where control is based on chemotherapy.
ISSN: 0002-9637

hal-00715427
https://hal.univ-antilles.fr/hal-00715427
PUBMED : 373472

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
This observation perfectly illustrates the main epidemiological, clinical and biological peculiarities of this parasitic disease. Particularly, as it concerns a tourist who travelled across Africa for a short period of time it is possible to assess the time of exposure to infecting mosquito bites, the maturation period of time as well as the time of clinical incubation. On the other hand the value of the immunological techniques to make the diagnosis of loaiasis as well as the difficulties to treat this affection are stressed upon.
ISSN: 0181-5512

hal-00715439
https://hal.univ-antilles.fr/hal-00715439
PUBMED : 6939746

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
: Malaria is a public health problem in French Guiana. Plasmodium vivax is the most frequent parasite. The objective of this analysis was to estimate the proportion of relapses in the burden of vivax malaria using the statistical rule stating that any case of vivax malaria occurring less than 90 days following a first episode is a relapse.A total of 622 subjects were followed for 2,9 years with 336 first single episodes of P. vivax malaria, and a total of 1,226 episodes of vivax malaria among which 559 were relapses (45.5%). For 194 patients having had falciparum malaria followed by vivax malaria it was estimated that 19% of the vivax episodes occurred less than 90 days following the falciparum episode and thus were possibly relapses due to the activation of latent hypnozoites. Despite the number of vivax cases and the number of relapses, there were only 28 recorded primaquine prescriptions (3.4% of vivax episodes, 4.5% of subjects).The present study points out that despite the fact that nearly half of the P. vivax cases, many of which in children, are caused by latent hypnozoites, only a minority of them benefit from primaquine radical cure. The obstacles to this are discussed and suggestions are made to reduce the burden of vivax malaria in Camopi and other remote health centres in French Guiana.
ISSN: 1475-2875

inserm-00903890
http://www.hal.inserm.fr/inserm-00903890
http://www.hal.inserm.fr/inserm-00903890/document
http://www.hal.inserm.fr/inserm-00903890/file/1475-2875-12-367.pdf
DOI : 10.1186/1475-2875-12-367

Éditeur(s) : HAL CCSD
Résumé : After a review of knowledge, attitudes and practices related to leishmaniasis in Amazonia, this work focused on the vegetal species used for its cure. Utilization of geographic and cultural diffusion index allowed to characterize Pan-Amazonian antileishmanial taxa and to investigate the mechanisms allowing for their diffusion. Consistency between traditional use and laboratory results were looked for. Two " knowledge, attitudes and practices " surveys were conducted amongst the Chayahuita (Peru) and along the upper and middle Oyapock river (French Guiana, Teko and Wayãpi groups). These allowed us to refine the knowledge and perception of the disease in these cultural groups, to define patterns in the therapeutic itinerary, and to make an inventory of antileishmanial plant species. Thirty one species used by the Chayahuita were collected and submitted to in vitro assays on axenic amastigotes of Leishmania amazonensis. Pseudoelephantopus spicatus (Asteraceae) is one of the most active and most frequently used plant. From this species, piptocarphol derivatives, very active against Leishmania in vitro, were isolated along with ursolic acid. Presence of these molecules justifies the use of this species as traditional antileishmanial remedy by the Chayahuita.
Après avoir dressé un inventaire des connaissances, attitudes et pratiques concernant les leishmanioses en Amazonie d'après la littérature, le présent travail s'est focalisé sur les espèces végétales connues et utilisées dans le traitement de ces maladies. L'utilisation d'indices de diffusion (géographique, culturelle) a permis de caractériser des taxons antileishmaniens panamazoniens et de définir certains mécanismes impliqués dans leur diffusion. Des cohérences entre usages traditionnels et résultats de laboratoire ont été recherchés. Deux enquêtes de type " connaissance, attitudes et pratiques " effectuées au sein du groupe chayahuita (Pérou), et sur le haut et moyen cours du fleuve Oyapock (Guyane, communautés teko et wayãpi) ont permis d'affiner les connaissances sur la perception de cette maladie dans ces différents groupes culturels, de comprendre les recours aux différentes thérapeutiques et de dresser un inventaire des espèces médicinales utilisées. Trente et une espèces collectées chez les Chayahuita ont été soumises à des essais in vitro sur amastigotes axéniques de Leishmania amazonensis. Pseudoelephantopus spicatus (Asteraceae) compte parmi les espèces les plus actives et les plus fréquemment utilisées, et des dérivés du piptocarphol très actifs sur les parasites in vitro ont été isolés conjointement à l'acide ursolique. La présence de ces molécules permet de justifier en partie l'usage de cette espèce comme antileishmanien traditionnel par les Chayahuita.
https://tel.archives-ouvertes.fr/tel-00590977

tel-00590977
https://tel.archives-ouvertes.fr/tel-00590977
https://tel.archives-ouvertes.fr/tel-00590977/document
https://tel.archives-ouvertes.fr/tel-00590977/file/ThA_se_Odonne_light.pdf