Éditeur(s) : HAL CCSD
Résumé : International audience
Indic scripts are among few scripts in the world that have had continuous development for more than two millennia. The modern forms of the scripts are the result of infinitesimal changes in handwriting being accumulated over centuries. They present us with a unique opportunity to understand various changes occurring in handwriting behavior. We have taken four major Indic scripts in six different stages of evolution and extracted features quantifying their handwriting behavior. We have derived these features by applying the principles of handwriting production and gesture analysis on a paleographic data set. We present various trends and behaviors that occurred during script development and discuss our interpretation of the results in terms of evolution of handwriting behavior. We then briefly discuss the detailed analyses that will be performed on the dataset in the future. We also consider the applications of these results in digital paleography and handwriting-driven systems.
17th Biennial Conference of the International Graphonomics Society
Pointe-à-Pitre, Guadeloupe

hal-01165770
https://hal.univ-antilles.fr/hal-01165770
https://hal.univ-antilles.fr/hal-01165770/document
https://hal.univ-antilles.fr/hal-01165770/file/IGS_2015_submission_8.pdf

Éditeur(s) : HAL CCSD Tsing Hua University
Résumé : International audience
This paper deals with variational inclusions of the form : $0in varphi(z)+F(z)$ where $varphi$ is a single-valued function admitting a second order Fréchet derivative and $F$ is a set-valued map from $R^q$ to the closed subsets of $R^q$. In order to approximate a solution $bar z$ of the previous inclusion, we use an iterative scheme based on a multipoint method. We obtain, thanks to some semistability properties of $bar z$, local superquadratic or cubic convergent sequences
ISSN: 1607-2510

hal-00728816
https://hal.archives-ouvertes.fr/hal-00728816

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
About 1-6% of the genetic ancestry of modern humans today originates from admixture with archaic humans. It has recently been shown that autosomal genomic regions with a reduced proportion of Neanderthal and Denisovan ancestries (NA and DA) are significantly enriched in genes that are more expressed in testis than in other tissues. To determine whether a cellular segregation pattern would exist, we combined maps of archaic introgression with a cross-analysis of three transcriptomic datasets deciphering the transcriptional landscape of human gonadal cell types. We reveal that the regions deficient in both NA and DA contain a significant enrichment of genes transcribed in meiotic germ cells. The interbreeding of anatomically modern humans with archaic humans may have introduced archaic-derived alleles that contributed to genetic incompatibilities affecting meiosis that were subsequently purged by natural selection.
ISSN: 0737-4038

hal-01578587
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578587
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578587/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578587/file/J%C3%A9gou%20et%20al%20-%20Meiotic%20Genes%20Are%20Enriched.pdf
DOI : 10.1093/molbev/msx141

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Cyanobacteria are ubiquitous microorganisms considered as important contributors to the formation of Earth's atmosphere and nitrogen fixation. However, they are also frequently associated with toxic blooms. Indeed, the wide range of hepatotoxins, neurotoxins and dermatotoxins synthesized by these bacteria is a growing environmental and public health concern. This paper provides a state of the art on the occurrence and management of harmful cyanobacterial blooms in surface and drinking water, including economic impacts and research needs. Cyanobacterial blooms usually occur according to a combination of environmental factors e.g., nutrient concentration, water temperature, light intensity, salinity, water movement, stagnation and residence time, as well as several other variables. These environmental variables, in turn, have promoted the evolution and biosynthesis of strain-specific, gene-controlled metabolites (cyanotoxins) that are often harmful to aquatic and terrestrial life, including humans. Cyanotoxins are primarily produced intracellularly during the exponential growth phase. Release of toxins into water can occur during cell death or senescence but can also be due to evolutionary-derived or environmentally-mediated circumstances such as allelopathy or relatively sudden nutrient limitation. Consequently, when cyanobacterial blooms occur in drinking water resources, treatment has to remove both cyanobacteria (avoiding cell lysis and subsequent toxin release) and aqueous cyanotoxins previously released. Cells are usually removed with limited lysis by physical processes such as clarification or membrane filtration. However, aqueous toxins are usually removed by both physical retention, through adsorption on activated carbon or reverse osmosis, and chemical oxidation, through ozonation or chlorination. While the efficient oxidation of the more common cyanotoxins (microcystin, cylindrospermopsin, anatoxin and saxitoxin) has been extensively reported, the chemical and toxicological characterization of their by-products requires further investigation. In addition, future research should also investigate the removal of poorly considered cyanotoxins (β-methylamino-alanine, lyngbyatoxin or aplysiatoxin) as well as the economic impact of blooms.
Environment International

hal-00875835
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00875835
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00875835/document
DOI : 10.1016/j.envint.2013.06.013
PUBMED : 23892224

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The minerals constituting the Earth's upper mantle are nominally anhydrous silicates (NAMs). However they do contain hydrogen as a trace element, decorating point defects in their crystalline structure. Experimental petrology and mineralogy have quantified the maximum concentration under several compositional and thermodynamic conditions, but systematic studies on the hydrogen concentration in minerals from mantle-derived rocks have only recently been carried out. Here, we have compiled the distribution of hydrogen in upper mantle peridotite xenoliths, from which several conclusions can be drawn. NAMs from peridotite xenoliths contain a few ppm wt. H2O in their structure. From the current database, the hydrogen concentrations in olivine regularly increase with increasing depth. The amount of hydrogen in NAMs from peridotite xenoliths from subduction contexts is not higher than in other geological context for similar temperature and pressure conditions. The highest hydrogen concentrations is found in peridotitic olivines from cratonic mantle, and are likely due to the depth of origin. The increasing hydrogen concentration in olivine with increasing depth is likely controlled by the increase of H partitioning into olivine at the expense of orthopyroxene as imposed by a decrease in Al content in opx with depth. However, the sparse data could also indicate that the bulk hydrogen concentration slightly increases with depth > 150 km. In this case, it would suggest, locally (Udachnaya for example), a possible increase in water fugacity due to fluid saturation. Even if the most abundant mineral in mantle rocks is olivine, the bulk hydrogen concentration in peridotites is controlled by the amount of hydrogen stored in pyroxenes. However, hydrogen concentration in olivine remains crucial for consequences on physical properties such as rheology and electrical conductivity. Kinetics of hydrogen transport is reviewed and hydrous melt/fluid percolation appears necessary to homogenize the hydrogen distribution at km-scale. Sampling of natural rock specimens is currently biased (e.g., in favor of optically attractive samples) and needs improvement, which will be achieved by increasing sample diversity (all type of grain sizes, lithologies, geological settings) and size of rock samples, as well as advances in analytical techniques. Acquisition of high quality data will be achieved by studying the co-existing minerals in mantle specimens, exploring each sample by linear and mapping measurements, and using appropriate FTIR calibrations for polarized and unpolarized radiation.
ISSN: 0024-4937

hal-01306676
https://hal.archives-ouvertes.fr/hal-01306676
DOI : 10.1016/j.lithos.2015.11.012

Éditeur(s) : HAL CCSD
Résumé : International audience
Metamorphic soles correspond to m to 500 m thick highly strained metamorphic rock units found beneath myloniticbanded peridotites at the base of large-scale ophiolites, as exemplified in Oman. Metamorphic soles aremainly composed of metabasalts deriving from the downgoing oceanic lithosphere and metamorphosed up togranulite-facies conditions by heat transfer from the mantle wedge. Pressure–temperature peak conditions areusually estimated at 1.00.2 GPa and 800100ºC. The absence of HP–LT metamorphism overprint implies thatmetamorphic soles have been formed and exhumed during subduction infancy. In this view, metamorphic soleswere strongly deformed during their accretion to the mantle wedge (corresponding, now, to the base of the ophiolite).Therefore, metamorphic soles and banded peridotites are direct witnesses of the dynamics of early subductionzones, in terms of thermal structure, fluid migration and rheology evolution across the nascent slab interface.Based on fieldwork and EBSD analyses, we present a detailed (micro–) structural study performed on samplescoming from the Sumeini window, the better-preserved cross-section of the metamorphic sole of Oman. Largedifferences are found in the deformation (CPO, grain size, aspect ratio) of clinopyroxene, amphibole and plagioclase,related to mineralogical changes linked with the distance to the peridotite contact (e.g., hardening due to theappearance of garnet and clinopyroxene).To model the incipient slab interface in laboratory, we carried out 5 hydrostatic annealing and simple-shear experimentson Griggs solid-medium apparatus. Deformation experiments were conducted at axial strain rates of 10-6s-1. Fine-grained amphibolite was synthetized by adding 1 wt.% water to a (Mid-Ocean Ridge) basalt powder asa proxy for the metamorphic sole (amphibole + plagioclase + clinopyroxene garnet assemblage). To synthetizegarnet, 2 experiments were carried out in hydrostatic conditions and with deformation at 800C with confiningpressure of 2 GPa. Another simple-shear experiment has been carried out at 800C and 1 GPa with fined-grainednatural garnet. With the aim of mimicking the early slab interface (between the metamorphic sole and bandedperidotites at the base of the ophiolite), 2 simple-shear deformation experiments with 2 layers have been carriedout at 800C and confining pressure of 1 GPa. The bottom layer was made of hydrated basalt powder and the toplayer was made of olivine.Fined-grained garnet-free amphibolite is significantly weaker than dunite but the appearance of harder mineralsin the amphibolite (garnet and clinopyroxene) has major implications on its rheological evolution. These resultsallow liking field observations of strain localization at the interface to the metamorphic sole formation
European Geosciences Union General Assembly 2016
Vienne, Austria

insu-01309394
https://hal-insu.archives-ouvertes.fr/insu-01309394

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Macrophages (MΦ), well-known to play an important role in immune response, also respond to environmental toxic chemicals such as diesel exhaust particles (DEP). Potential effects of DEPs towards MΦ polarization, a key hall-mark of MΦ physiology, remain however poorly documented. This study was therefore designed to evaluate the effects of a reference DEP extract (DEPe) on human MΦ polarization. Human blood monocytes-derived MΦ were incubated with IFNγ+LPS or IL-4 to obtain M1 and M2 subtypes, respectively; a 24 h exposure of polarizing MΦ to 10 μg/ml DEPe was found to impair expression of some macrophagic M1 and M2 markers, without however overall inhibition of M1 and M2 polarization processes. Notably, DEPe treatment increased the secretion of the M1 marker IL-8 and the M2 marker IL-10 in both MΦ subtypes, whereas it reduced lipopolysaccharide-induced IL-6 and IL-12p40 secretion in M1 MΦ. In M2 MΦ, DEPe exposure led to a reduction of CD200R expression and of CCL17, CCL18 and CCL22 secretion, associated with a lower chemotaxis of CCR4-positive cells. DEPe activated the Nrf2 and AhR pathways and induced expression of their reference target genes such as Hmox-1 and cytochrome P-4501B1 in M1 and M2 MΦ. Nrf2 or AhR silencing through RNA interference prevented DEPe-related down-regulation of IL-6. AhR silencing also inhibited the down-secretion of IL-12p40 and CCL18 in M1- and M2-DEPe-exposed MΦ, respectively. DEPs are therefore likely to alter expression of some M1 and M2 markers in an AhR- and Nrf2-dependent manner; such regulations may contribute to deleterious immune effects of atmospheric DEP.
ISSN: 1932-6203

hal-01122723
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01122723
PUBMED : 25710172
DOI : 10.1371/journal.pone.0116560

Éditeur(s) : HAL CCSD Wiley-VCH Verlag
Résumé : International audience
Deciphering the assembly history of the Milky Way is a formidable task, which becomes possible only if one can produce high-resolution chrono-chemo-kinematical maps of the Galaxy. Data from large-scale astrometric and spectroscopic surveys will soon provide us with a well-defined view of the current chemo-kinematical structure of the Milky Way, but will only enable a blurred view on the temporal sequence that led to the present-day Galaxy. As demonstrated by the (ongoing) exploitation of data from the pioneering photometric missions CoRoT, Kepler, and K2, asteroseismology provides the way forward: solar-like oscillating giants are excellent evolutionary clocks thanks to the availability of seismic constraints on their mass and to the tight age-initial-mass relation they adhere to. In this paper we identify five key outstanding questions relating to the formation and evolution of the Milky Way that will need precise and accurate ages for large samples of stars to be addressed, and we identify the requirements in terms of number of targets and the precision on the stellar properties that are needed to tackle such questions. By quantifying the asteroseismic yields expected from PLATO for red-giant stars, we demonstrate that these requirements are within the capabilities of the current instrument design, provided that observations are sufficiently long to identify the evolutionary state and allow robust and precise determination of acoustic-mode frequencies. This will allow us to harvest data of sufficient quality to reach a 10% precision in age. This is a fundamental pre-requisite to then reach the more ambitious goal of a similar level of accuracy, which will only be possible if we have to hand a careful appraisal of systematic uncertainties on age deriving from our limited understanding of stellar physics, a goal which conveniently falls within the main aims of PLATO's core science.
ISSN: 0004-6337

hal-01541393
https://hal.archives-ouvertes.fr/hal-01541393
ARXIV : 1706.3778
BIBCODE : 2017AN....338..644M
DOI : 10.1002/asna.201713385

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Although first-order rate constants are basic ingredients of physical chemistry, biochemistry and systems modeling, their innermost nature is derived from complex physical chemistry mechanisms. The present study suggests that equivalent conclusions can be more straightly obtained from simple statistics. The different facets of kinetic constants are first classified and clarified with respect to time and energy and the equivalences between traditional flux rate and modern probabilistic modeling are summarized. Then, a naive but rigorous approach is proposed to concretely perceive how the Arrhenius law naturally emerges from the geometric distribution. It appears that (1) the distribution in time of chemical events as well as (2) their mean frequency, are both dictated by randomness only and as such, are accurately described by time-based and spatial exponential processes respectively.
Physica A: Statistical Mechanics and its Applications

hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518v2/document
ARXIV : 1307.4583
DOI : 10.1016/j.physa.2013.05.036

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Timétrine massif exposed west of the Pan-African suture zone in northeastern Mali belongs to the passive margin of the West African craton facing to the east intra-oceanic arc assemblages and 730 Ma old pre-collisional calc-alkaline plutons. The Timétrine lithologic succession includes from the base to the top Mesoproterozoic cratonic to passive margin formations overlain by deep-sea Fe-Mg schists. Submarine metabasalts and two ultramafic massifs of serpentinized mantle peridotites are inserted as olistoliths towards the top whereas turbidites of continental origin represent the younger unit. Field and petrological data have revealed a distinct metasedimentary sequence attached to the serpentinized peridotites. It essentially consists of impure carbonates, Fe jaspers and polymictic breccias containing altered blocks of mantle peridotites, most rocks being enriched in detrital chromite. This association is interpreted as reworked chemical and detrital sediments derived from the alteration of mafic-ultramafic rocks. It is argued that mantle exhumation above sea floor took place during the Neoproterozoic rifting and crustal thinning period under possible tropical conditions, as suggested by the large volume of silicified serpentinites. In spite of greenschist facies metamorphic overprint characterized by widespread Fe-rich blue amphiboles that are not diagnostic of high-pressure conditions, it is possible to reconstruct a former ocean-continent transition similar to that evidenced for the Mesozoic period, followed by the deposition of syn-to post rift terrigeneous turbidites roughly coeval with ocean spreading some time before 800 Ma. It is concluded that the serpentinite massifs were tectonically emplaced first in an extensional setting, then incorporated within deep-sea sediments as olistoliths and finally transported westward during late Neoproterozoic collisional tectonics onto the West African craton.
ISSN: 0899-5362

hal-00985586
https://hal.archives-ouvertes.fr/hal-00985586
DOI : 10.1016/j.jafrearsci.2013.11.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In the Schistes Lustres of Alpine Corsica (France) serpentinized mantle rocks are associated with continental basement and meta-volcanic/-seclimentary cover rocks. The relationships among these different lithologies are especially well exposed in the Monte San Petrone unit, where Alpine metamorphism reached lawsonite-eclogite conditions. The contact between serpentinites and slivers of continental basement, relatively flat-lying over several kilometers, is characterized by evidence of cataclastic deformation pre-dating Alpine High-Pressure ductile fabrics. The serpentinite/continental basement pair is stratigraphically overlain by metasediments with a typical Jurassic-Cretaceous supra-ophiolitic lithostratigraphy, with metaradiolarites passing upward to marbles and cal cschists. Noticeably, no evidence of cataclastic deformation is found in metasediments. These observations indicate that the lithostratigraphy of the Monte San Petrone unit was established during a pre-Alpine polyphase evolution, which culminated in extensive brittle deformation along a flat-lying detachment fault prior to the deposition of Jurassic sediments. We suggest that the inferred Mesozoic extensional tectonics were related to the opening of the Westem Tethys. The Mesozoic architecture of the Monte San Petrone area, which is typical of an Ocean-Continent Transition (OCT) zone, was preserved despite Alpine deformation and metamorphism, when the different lithologies (i.e. meta-ophiolites, continent-derived rocks and metasediments) underwent a common metamorphic evolution, culminating at T=490-550 degrees C and P= 2.2-2.6 GPa. Similar tectonostratigraphic associations are observed in other high-pressure terranes of Alpine Corsica, suggesting that inherited OCT-type domains may be common in Alpine-type orogens.
ISSN: 0024-4937

hal-00617744
https://hal.archives-ouvertes.fr/hal-00617744
DOI : 10.1016/j.lithos.2011.02.013

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Hydrothermal circulation at ultramafic-hosted sites supports a large variety of high-and low-temperature hydrothermal vents and associated ecosystems. The discovery of abundant fossil vesicomyid and thyasirid shell accumulations at the ridge crest, approximately 2.5 km east of the active Rainbow vent field on the Mid-Atlantic Ridge (MAR, 36 degrees 13'N), increased our knowledge regarding the diversity of vent communities at slow spreading ridges. Bivalve molluscs of the family Vesicomyidae were represented by the genus Phreagena. Here we present the first record of this genus in the Atlantic Ocean. This second vesicomyid species known from the MAR, Phreagena sp., was found to be associated with a Thyasira species that is affiliated with T. southwardae (at the Logatchev vent field on the MAR) and with T. vulcolutre (in the Gulf of Cadiz). These two clams have close relationships with seep taxa along the continental margin, and were likely associated with sedimented vent fields. delta O-18 and delta C-13 analyses of the shells suggested that the burrowing bivalve Thyasira could incorporate isotopically light carbon, derived from the oxidation of methane in the sediment, while the signature of Phreagena sp. shells denoted a different carbonate source. C-14 dating of the shells denoted that the hydrothermal activity in the Rainbow area began at least similar to 25.5 kyr BP, which is similar to the model of the hydrothermal vent field distribution that was proposed for the Logatchev hydrothermal site. The results provide new insight regarding the diversity of chemosynthetic fauna on the MAR over geologic time. Ultramafic-hosted, on-axis sedimented vent fields extend the range of habitats for chemosynthetic communities, underlying the need to further explore the geology of these types of environments on slow-spreading ridges and to determine their role in the ecology of deep-sea vent communities.
ISSN: 1525-2027

hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467/document
https://hal.archives-ouvertes.fr/hal-00523467/file/G3-Lartaud-_-al.pdf
DOI : 10.1029/2010GC003079

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The Mediterranean hydrometeorological observatory Cévennes-Vivarais (OHM-CV) coordinates hydrometeorological observations (radars, rain gauges, water level stations) on a regional scale in southeastern France. In the framework of OHM-CV, temporary GPS measurements have been carried out for 2 months in autumn 2002, when the heaviest rainfall are expected. These measurements increase the spatial density of the existing permanent GPS network, by adding three more receivers between the Mediterranean coast and the Cévennes-Vivarais range to monitor maritime source of water vapour flow feeding the precipitating systems over the Cévennes-Vivarais region. In addition, a local network of 18 receivers covered an area of 30 by 30 km within the field of view of the meteorological radar. These regional and local networks of permanent and temporary stations are used to monitor the precipitable water vapour (PWV) with high temporal resolution (15 min). Also, the dense local network provided data which have been inverted using tomographic techniques to obtain the 3-D field of tropospheric water vapour content. This study presents methodological tests for retrieving GPS tropospheric observations from dense networks, with the aim of assessing the uncertainties of GPS retrievals. Using optimal tropospheric GPS retrieval methods, high resolution measurements of PWV on a local scale (a few kilometres) are discussed for rain events. Finally, the results of 3-D fields of water vapour densities from GPS tomography are analysed with respect to precipitation fields derived from a meteorological radar, showing a good correlation between precipitation and water vapour depletion areas.
ISSN: 1867-1381

hal-01022833
https://hal.archives-ouvertes.fr/hal-01022833
https://hal.archives-ouvertes.fr/hal-01022833/document
https://hal.archives-ouvertes.fr/hal-01022833/file/amt-7-553-2014.pdf
DOI : 10.5194/amt-7-553-2014

Éditeur(s) : HAL CCSD American Society for Pharmacology and Experimental Therapeutics (ASPET)
Résumé : International audience
Most human hepatocyte cell lines lack a substantial set of liver-specific functions, especially major cytochrome P450 (P450)-related enzyme activities, making them unrepresentative of in vivo hepatocytes. We have used the HepaRG cells, derived from a human hepatocellular carcinoma, which exhibit a high differentiation pattern after 2 weeks at confluency to determine whether they could mimic human hepatocytes for drug metabolism and toxicity studies. We show that when passaged at low density, these cells reversed to an undifferentiated morphology, actively divided, and, after having reached confluency, formed typical hepatocyte-like colonies surrounded by biliary epithelial-like cells. By contrast, when seeded at high density, hepatocyte-like clusters retained their typical differentiated morphology. Transcripts of various nuclear receptors (aryl hydrocarbon receptor, pregnane X receptor, constitutive androstane receptor, peroxisome proliferator-activated receptor alpha), P450s (CYP1A2, 2C9, 2D6, 2E1, 3A4), phase 2 enzymes (UGT1A1, GSTA1, GSTA4, GSTM1), and other liver-specific functions were estimated by reverse transcriptase-quantitative polymerase chain reaction and were found to be expressed, for most of them, at comparable levels in both confluent differentiated and high-density differentiated HepaRG cells and in cultured primary human hepatocytes. For several transcripts, the levels were strongly increased in the presence of 2% dimethyl sulfoxide. Measurement of basal activities of several P450s and their response to prototypical inducers as well as analysis of metabolic profiles and cytotoxicity of several compounds confirmed the functional resemblance of HepaRG cells to primary cultured human hepatocytes. In conclusion, HepaRG cells constitute the first human hepatoma cell line expressing high levels of the major P450s involved in xenobiotic metabolism and represent a reliable surrogate to human hepatocytes for drug metabolism and toxicity studies.
ISSN: 0090-9556

hal-00702085
https://hal.archives-ouvertes.fr/hal-00702085
DOI : 10.1124/dmd.105.006759
PUBMED : 16204462

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The cyanobacteria-derived neurotoxin β-methylamino-l-alanine (BMAA) represents a plausible environmental trigger for amyotrophic lateral sclerosis (ALS), a debilitating and fatal neuromuscular disease. With the eutrophication of water bodies, cyanobacterial blooms and their toxins are becoming increasingly prevalent in France, especially in the Brittany region. Cyanobacteria are monitored at only a few recreational sites, preventing an estimation of exposure of the human population. By contrast, phosphorus, a limiting nutrient for cyanobacterial growth and thus considered a good proxy for cyanobacteria exposure, is monitored in many but not all surface water bodies. Our goal was to develop a geographic exposure indicator that could be used in epidemiological research. We considered the total phosphorus (TP) concentration (mg/L) of samples collected between October 2007 and September 2012 at 179 monitoring stations distributed throughout the Brittany region. Using readily available spatial data, we computed environmental descriptors at the watershed level with a Geographic Information System. Then, these descriptors were introduced into a backward stepwise linear regression model to predict the median TP concentration in unmonitored surface water bodies. TP concentrations in surface water follow an increasing gradient from West to East and inland to coast. The empirical concentration model included five predictor variables with a fair coefficient of determination (R2 = 0.51). The specific total runoff and the watershed slope correlated negatively with the TP concentrations (p = 0.01 and p < 10− 9, respectively), whereas positive associations were found for the proportion of built-up area, the upstream presence of sewage treatment plants, and the algae volume as indicated by the Landsat red/green reflectance ratio (p < 0.01, p < 10− 6 and p < 0.01, respectively). Complementing the monitoring networks, this geographical modeling can help estimate TP concentrations at the watershed level, delivering a proxy for cyanobacteria exposure that can be used along with other risk factors in further ALS epidemiologic case–control studies
ISSN: 0160-4120

hal-01175538
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01175538
DOI : 10.1016/j.envint.2015.04.007
PUBMED : 25913322

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
A thorough phytochemical study of Stereocaulon evolutum was conducted, for the isolation of structurally related atranorin derivatives. Indeed, pilot experiments suggested that atra-norin (1), the main metabolite of this lichen, would interfere with the lifecycle of hepatitis C virus (HCV). Eight compounds, including one reported for the first time (2), were isolated and characterized. Two analogs (5, 6) were also synthesized, to enlarge the panel of atra-norin-related structures. Most of these compounds were active against HCV, with a half-maximal inhibitory concentration of about 10 to 70 µM, with depsides more potent than monoaromatic phenols. The most effective inhibitors (1, 5 and 6) were then added at different steps of the HCV lifecycle. Interestingly, atranorin (1), bearing an aldehyde function at C-3, inhibited only viral entry, whereas the synthetic compounds 5 and 6, bearing a hydroxy-methyl and a methyl function, respectively, at C-3 interfered with viral replication.
ISSN: 1932-6203

hal-01134343
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134343
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134343/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134343/file/Depsides-PloS.pdf
DOI : 10.1371/journal.pone.0120405

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Because earthworms sustain soil functioning and fertility, there is a need to advance the knowledge of their adaptation potential to chemicals in anthropogenic landscapes. Our hypothesis is that there is acclimation to organic chemicals (pesticides) in earthworms that durably persist under conventional farming in anthropogenic landscapes. The adaptation capability of two populations of earthworms (Aporectodea caliginosa) having a different chemical exposure history, - one originating from 20 years of organic farming (naïve population) and another from 20 years of conventional farming (pre-exposed population) - to cope with soil organic pollutant (Opus®, epoxiconazole a worldwide used fungicide) were investigated. Several complementary metabolic and energetic endpoints were followed, and cast production was assessed as a behavioural biomarker related to earthworms ecological role for the soil. Basal metabolism reflected by respiration rate was increased in both fungicide-exposed worms compared to controls. Glycogen resources were decreased in the same proportion in the two populations but more rapidly for the naïve (7 days) than for the pre-exposed population (28 days). Soluble protein and most amino-acids contents increased in the pre-exposed population only, suggesting a detoxification mechanism. Metabolomic profiles showed a cut-off between fungicide-exposed and control groups in the pre-exposed earthworms only, with an increase in most of the metabolites. Exposure to a low dose of epoxiconazole increased cast production of pre-exposed earthworms, and this resulted in an increase in pesticide disappearance. As far as we know, this is the first study which evidenced there is an acclimation to an agricultural chemical in earthworms derived from conventional farming that also relates to a change in their burrowing behaviour, and for which larger consequences for the soil ecosystem need to be addressed. This original finding is of major interest in the frame of ecosystem resilience to global changes. Whether this physiological adaptation is a general pattern of response against fungicides or other pesticides would need to be confirmed with other molecules and agricultural contexts.
Soil Biology and Biochemistry

hal-01005821
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01005821
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01005821/document
DOI : 10.1016/j.soilbio.2014.01.032

Éditeur(s) : HAL CCSD Cold Spring Harbor Laboratory Press
Résumé : International audience
Meiotic DNA double-stranded breaks (DSBs) initiate genetic recombination in discrete areas of the genome called recombination hotspots. DSBs can be directly mapped using chromatin immunoprecipitation followed by sequencing (ChIP-seq). Nevertheless, the genome-wide mapping of recombination hotspots in mammals is still a challenge due to the low frequency of recombination, high heterogeneity of the germ cell population, and the relatively low efficiency of ChIP. To overcome these limitations we have developed a novel method--single-stranded DNA (ssDNA) sequencing (SSDS)--that specifically detects protein-bound single-stranded DNA at DSB ends. SSDS comprises a computational framework for the specific detection of ssDNA-derived reads in a sequencing library and a new library preparation procedure for the enrichment of fragments originating from ssDNA. The use of our technique reduces the nonspecific double-stranded DNA (dsDNA) background >10-fold. Our method can be extended to other systems where the identification of ssDNA or DSBs is desired.
ISSN: 1088-9051

hal-00877675
https://hal.archives-ouvertes.fr/hal-00877675
DOI : 10.1101/gr.130583.111
PUBMED : 22367190

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : International audience
– The 300 km long allochthonous sheet of oceanic mantle forming the New Caledonia ophiolite displays three specific characters: 1) the ophiolite pile lacks concordant sheeted dykes and pillow basalt layers; 2) the ophiolite, refered to as the Peridotite nappe, is thrusted over the basaltic formations of the Poya terrane which are classicaly thought to originate from a different oceanic environment; 3) The basal contact of the ultramafic sheet is remarkably flat all along New-Caledonia and the Peridotite nappe has not been thickened during obduction, rather it experienced significant extension. This suggests that the peridotites have not been emplaced by a tectonic force applied to the rear. New petrological and geochemical results obtained from mantle rocks finally show that the Poya terrane may originate from the same oceanic basin as the peridotites. In this article, we consider such possible cogenetic links and we propose a simple model for the obduction of the New Caledonia ophiolite in which the Poya basalts represent the original cover of the Peridotite nappe. We infer that continuous uplift of the subducted units buried beneath the oceanic lithosphere in the northern part of New Caledonia drove passive uplift of the ophiolite and led to erosion and to initiation of sliding of the basaltic layer. During the Priabonian (latest Eocene), products of the erosion of the basaltic layer were deposited together with sediments derived from the Norfolk passive oceanic margin. These sediments are involved as tectonic slices into an accretionary wedge formed in response to plate convergence. The volcaniclastic sedimentation ends up with the emplacement of large slided blocks of basalts and rafted mafic units that progressively filled up the basin. Obduction process ended with the gravity sliding of the oceanic mantle sheet, previously scalped from its mafic cover. This process is contemporaneous with the exhumation of the HP-LT units of Pouebo and Diahot. Gravity sliding was facilitated by the occurrence of a continuous serpentine sole resulting from metasomatic hydratation of mantle rocks, which developed during the uplift of the Norfolk basement and overlying Diahot and Pouébo units. Progressive emersion of the obducted lithosphere allowed subsequent weathering under subaerial, tropical conditions. Obduction passive et mise en place gravitaire des grandes nappes ophiolitiques : les ophiolites de Nouvelle-Calédonie (SW Pacifique) sont-elles un cas d'école ? Résumé. – La nappe de manteau de Nouvelle-Calédonie, s'étendant sur 300 km de long montre trois caractéristiques im-portantes: 1) La succession ophiolitique ne contient ni dykes, ni basaltes en coussin, 2) l'ophiolite est charriée sur des formations basaltiques (nappe de Poya) que l'on considère classiquement comme originaires d'un bassin océanique dif-férent de celui d'où est issu le manteau, et 3) le contact basal de la nappe ultrabasique est remarquablement plat tout le long de l'île et celle-ci n'a pas été épaissie durant l'obduction. Cela suggère que les péridotites n'ont pas été mises en place en réponse à une poussée tectonique arrière. De nouveaux résultats pétrologiques et géochimiques obtenus sur l'ophiolite montrent en réalité que les basaltes de Poya peuvent être extraits de la fusion du manteau de l'ophiolite. Nous proposons donc un nouveau modèle pour l'obduction, dans lequel les basaltes de Poya forment la couver-ture initiale primitive du manteau de la nappe des péridotites. La surrection progressive des unités profondes enfouies lors de la subduction de la lithosphère du bassin sud-Loyauté à l'Eocène, a permis le soulèvement passif de l'ophiolite et l'érosion puis le glissement des unités basaltiques. Durant le Priabonien, l'accumulation des produits de l'érosion de la couche des basaltes et de la marge passive de Norfolk ont formé les séquences de flysch comprenant localement des débris basaltiques grossiers. Ces sédiments font partie d'un prisme d'accrétion tectonique construit en réponse à la convergence au front de la subduction. La sédimentation détritique se termine par la mise en place de grandes unités ba-saltiques glissées qui comblent le bassin. Le processus de l'obduction se termine par le glissement gravitaire de l'écaille de manteau océanique sur les basaltes. Cet événement est contemporain de l'exhumation des unités HP-BT de Pouébo et du Diahot. Le glissement gravitaire a été facilité par la présence sous l'ophiolite, d'une semelle continue de serpentines résultant de l'interaction du manteau avec des fluides métasomatiques remontant durant l'exhumation des unités en-fouies pendant la subduction continentale. L'émersion progressive de la lithosphère obduite a placé le manteau dans des conditions d'altération supergène tropicale.
EISSN: 1777-5817

hal-01257702
https://hal.archives-ouvertes.fr/hal-01257702
https://hal.archives-ouvertes.fr/hal-01257702/document
https://hal.archives-ouvertes.fr/hal-01257702/file/Lagabrielleetal-BSGF-2012-revised-light.pdf
DOI : 10.2113/gssgfbull.184.6.545

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND: Dairy working increases the prevalence of lower airway respiratory diseases, especially COPD and asthma. Epidemiological studies have reported that chronic inhalation of organic dusts released during specific daily tasks could represent a major risk factor for development of these pathologies in dairy workers. Knowledge on size, nature and biological activity of such organic dusts remain however limited. OBJECTIVE: To compare size distribution, microbial composition and cellular effects of dusts liberated by the spreading of straw bedding in five French dairy farms located in Brittany. RESULTS: Mechanized distribution of straw bedding generated a cloud of inhalable dusts in the five dairy farms' barns. Thoracic particles having a 3-7.5µm size constituted 58.9-68.3% of these dusts. Analyses of thoracic dusts by next generation sequencing showed that the microbial dust composition differed between the five French farms, although Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria represent more than 97.5% of the bacterial phyla detected in each sample. Several bacteria genera comprising of human pathogenic species, such as Pseudomonas, Staphylococcus, Thermoactinomyces or Saccharopolyspora were identified. Cladosporium and Alternaria fungal genera, which are potent environmental determinants of respiratory symptoms, were detected in dusts collected in the five farms and their levels reached 15.5-51.1% and 9-24.7% of assignable fungal sequences in each sample, respectively. Finally, all dust samples significantly and strongly increased the expression of the pro-inflammatory TNF-α, IL-1β, IL-6 and IL-8 cytokines at both mRNA and protein levels in human monocyte-derived macrophages. Their effects were dose-dependent and detectable from 1µg/ml. The intensity of the macrophage responses however differed according to the samples. CONCLUSIONS: Our results strengthen the hypothesis that organic dusts released during the distribution of straw bedding are mainly constituted of thoracic particles which are small enough to deposit on lower bronchial epithelium of dairy farmers and induce inflammation.
Environmental Research

hal-01579610
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01579610
DOI : 10.1016/j.envres.2017.07.025
PUBMED : 28735230