Résumé : Shelled molluscs are comprised of bivalves and gastropods. They are settled mainly on the continental shelf as benthic and sedentary animals due to their heavy protective shell. They can stand a wide range of environmental conditions. They are found in the whole trophic chain and are particle feeders, herbivorous, carnivorous, and predators. Exploited mollusc species are numerous. The main groups of gastropods are the whelks, conchs, abalones, tops, and turbans; and those of bivalve species are oysters, mussels, scallops, and clams. They are mainly used for food, but also for ornamental purposes, in shellcraft industries and jewelery. Consumed species are produced by fisheries and aquaculture, the latter representing 75% of the total 11.4 millions metric tons landed worldwide in 1996. Aquaculture, which mainly concerns bivalves (oysters, scallops, and mussels) relies on the simple techniques of producing juveniles, natural spat collection, and hatchery, and the fact that many species are planktivores.
Fisheries and aquaculture. Encyclopedia of life support systems : Volume II ; edited by Patrick Safran

Droits : Encyclopedia of Life Support Systems (EOLSS)
http://archimer.ifremer.fr/doc/2001/publication-529.pdf
http://archimer.ifremer.fr/doc/00000/529/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The embryonic development in Chione cancellata, from fertilization to straighthinge D-stage veliger larva, occurs in 24 h at 251C. Transmission (TEM) and scanning (SEM) electron microscopy show that morphogenetic processes result in a gastrula with two depressions, 4 h after fertilization (T014 h). Two hours later, one depression, located at the animal pole, develops into an open cave, the floor of which becomes the shell field, characterized by scarce microvilli, located below the lower face of the prototrochal pad. The invagination located at the vegetal pole is characterized by regular microvilli and constitutes the digestive tract. At T018 h, the late gastrula differentiates into a typical motile trochophore, possessing a well-developed prototroch delimiting anterior and posterior embryonic regions. At T019h, the shell field, located between the prototroch and the telotroch, appears as a saddle-shaped region with a wrinkled surface extending on both sides of the embryo, establishing bilateral symmetry. From TEM observations, the apical surface of the underlying cells possesses a modified glycocalyx featuring a dense pellicle overlapping the cells of the shell field. At T0112 h, the prototroch is displaced toward the anterior region by outgrowth of the shell material. TEM views show that the wrinkled surface observed with SEM corresponds to the periostracum, attached dorsally to the hinge and ventrally to the cells of the future mantle edge. At T0115 h, an alveolar matrix of proteinaceous material, which could contain calcite crystals, appears between the periostracum and the mantle. At T0124 h, prodissoconch I formation is completed and the D-stage larvae possess a calcified shell. At this stage of development, only one mantle fold is present, representing the outer fold. The periostracumsecreting cells are in contact with the marginal cells of the velum. This functional velum is composed of four bands of cilia. Our TEMobservations confirm previous descriptions of the velum ciliary bands obtained only from SEM analyses, such as described in other bivalves. The apical sense organ and the digestive tract are poorly developed. From observations at the ultrastructural level of shell differentiation in C. cancellata, we propose a new interpretation of shell differentiation, including hinge and ligament for bivalves as opposed to that described for gastropods.
ISSN: 1077-8306

hal-00755283
https://hal.univ-antilles.fr/hal-00755283
DOI : 10.1111/j.1744-7410.2006.00036.x

Éditeur(s) : HAL CCSD Station Biologique
Résumé : International audience
The embryonic development of Tivela mactroides, from fertilization to straight-hinge veliger D-stage larva occurs in 18 hours at 25°C. Scanning electronic observations show that morphogenetic processes result in a gastrula with two depressions 4 hours after fertilization (T0 + 4h). Two hours later, one depression, located at the animal pole, develops into an open cave, the floor of which becomes the shell field located below the lower face of the prototrochal pad. The invagination located at the vegetal pole features the blastopore. At T0 + 6h, the late gastrula has differentiated into a typical motile trochophore with a shell field synthetizing the organic part of the shell. At T0 + 8h, the shell field, located between the prototroch and the telotroch, appears as a saddle-shaped region with a wrinkled surface extending on both sides of the embryo, establishing bilateral symmetry. At T0 + 12h, the prototroch slides toward the anterior region by outgrowth of the shell material. At T0 + 18h, the prodissoconch I formation is completed and the D-stage larvae possess a calcified shell. At this stage of development, the functional velum is composed of four bands of cilia. Our observations seem to confirm the interpretation of shell differentiation proposed recently by Mouëza et al. (2006) for bivalves even if Transmission Electronic observations will be necessary to validate definitively such a model in the Meretricinae sub-family.
ISSN: 0007-9723

hal-00753022
https://hal.univ-antilles.fr/hal-00753022

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Hydrothermal circulation at ultramafic-hosted sites supports a large variety of high-and low-temperature hydrothermal vents and associated ecosystems. The discovery of abundant fossil vesicomyid and thyasirid shell accumulations at the ridge crest, approximately 2.5 km east of the active Rainbow vent field on the Mid-Atlantic Ridge (MAR, 36 degrees 13'N), increased our knowledge regarding the diversity of vent communities at slow spreading ridges. Bivalve molluscs of the family Vesicomyidae were represented by the genus Phreagena. Here we present the first record of this genus in the Atlantic Ocean. This second vesicomyid species known from the MAR, Phreagena sp., was found to be associated with a Thyasira species that is affiliated with T. southwardae (at the Logatchev vent field on the MAR) and with T. vulcolutre (in the Gulf of Cadiz). These two clams have close relationships with seep taxa along the continental margin, and were likely associated with sedimented vent fields. delta O-18 and delta C-13 analyses of the shells suggested that the burrowing bivalve Thyasira could incorporate isotopically light carbon, derived from the oxidation of methane in the sediment, while the signature of Phreagena sp. shells denoted a different carbonate source. C-14 dating of the shells denoted that the hydrothermal activity in the Rainbow area began at least similar to 25.5 kyr BP, which is similar to the model of the hydrothermal vent field distribution that was proposed for the Logatchev hydrothermal site. The results provide new insight regarding the diversity of chemosynthetic fauna on the MAR over geologic time. Ultramafic-hosted, on-axis sedimented vent fields extend the range of habitats for chemosynthetic communities, underlying the need to further explore the geology of these types of environments on slow-spreading ridges and to determine their role in the ecology of deep-sea vent communities.
ISSN: 1525-2027

hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467/document
https://hal.archives-ouvertes.fr/hal-00523467/file/G3-Lartaud-_-al.pdf
DOI : 10.1029/2010GC003079

Éditeur(s) : Inter-research
Résumé : Environmental conditions experienced by aquatic organisms are archived in biogenic carbonates such as fish otoliths, bivalve shells and coral skeletons. These calcified structures present an accretionary growth and variations in optical properties - color or opacity - that are used to reconstruct time. Full and reliable exploitation of the information extracted from these structures is, however, often limited as the metabolic processes that control their growth and their optical properties are poorly understood. Here, we propose a new modeling framework that couples both the growth of a biogenic carbonate and its optical properties with the metabolism of the organism. The model relies on well-tested properties of Dynamic Energy Budget (DEB) theory. It is applied to otoliths of the Bay of Biscay anchovy (Engraulis encrasicolus) for which a DEB model has been previously developed. The model reproduces well-known otolith patterns and thus provides us with mechanisms for the metabolic control of otolith size and opacity at the scale of an individual lifespan. Two original contributions using this framework are demonstrated. First, the model can be used to reconstruct the temporal variations in the food assimilated by an individual fish. Reconstructing food conditions of past and present aquatic species in their natural environment is key ecological information to better understand population dynamics. Second, we show that non-seasonal checks can be discriminated from seasonal checks, which is a well-recognized problem when interpreting fish otoliths. We discuss further developments of the model and the experimental settings required to test this new promising framework.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2012 , Vol. 447 , P. 151-164

Droits : 2012 Inter-Research
http://archimer.ifremer.fr/doc/00060/17082/14593.pdf
DOI:10.3354/meps09492
http://archimer.ifremer.fr/doc/00060/17082/

Éditeur(s) : Elsevier Science Bv
Résumé : In bivalve aquaculture, dominant fouling organisms are filter feeders which can compete for food with reared bivalves, sometimes causing mortality or reducing their growth rate. This study investigated the effect of biofouling on the farmed pearl oyster Pinctada margaritifera in two lagoons of French Polynesia. Survival, growth and reproduction of 2 year-old pearl oysters were monitored with regular sampling schedules, from the initial stage of colonization up to 20 months of biofouling accumulation. Control groups of pearl oysters were kept free of biofouling as is the current practice in pearl farms. After more than a year of monitoring, no significant difference was recorded in shell growth rate between pearl oysters reared with epibionts and the control group of pearl oysters, at both sites. Mean annual shell growth rate (height) was 30.5 ± 9.2 mm in Tahiti and 24.8 ± 7.7 mm in Mangareva. Neither the survival nor the reproduction indices were negatively affected by biofouling. In Mangareva, where biofouling development was quantified during 1 year, the rate of colonization appeared to be high during the first 3 months before slowing down. These results raise questions about the necessity of removing biofouling at this stage of pearl oyster production (i.e. before grafting).
Aquaculture (0044-8486) (Elsevier Science Bv), 2014-10 , Vol. 434 , P. 18-26

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00201/31188/29587.pdf
DOI:10.1016/j.aquaculture.2014.07.012
http://archimer.ifremer.fr/doc/00201/31188/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We have discovered in a marine core, located 20 km east of the Coastal Range of Taiwan at the top of a 1200 m deep submarine high, sheltered from rivers discharges and gravitational flows, a 23 cm-thick anomalous sequence topped with broken bivalves and wood fragments. Based on radiocarbon dating, we distinguish five sub-events within ∼ 100 yrs, about 3000 years ago. The oldest four sub-events are interpreted as the record of local submarine landslides, likely triggered by clustered earthquakes that are common in this tectonically active area. The last event including shells and wood has a different origin. Despite the high level of climatic and tectonic recent activity, no comparable event has been observed at the same site since that time, making it unique during the last 3.75 ka. Hydrodynamical modeling stimulated with a set of submarine landslide-triggered tsunami sources and combined with the regional oceanic circulation dominated by the Kuroshio Current, allow us to better constrain the transport paths of the suspended material, the expected run-up at the coast, and ultimately the trigger and source that best fit our observations. The Kuroshio Current appears as a strong constraint that generally prevents cross-shore transport of suspended material even during a major tsunami. Since the largest aerial debris flow observed along the east coast of Taiwan during the last 4 ka was synchronous with the marine deposit, our preferred scenario starts with the occurrence of four distinct large earthquakes within less than a century, triggering both submarine and aerial landslides in the study area. Then, a giant typhoon reworked the nearshore material as well as the slided material stored upstream resulting in a debris flow. It deeply modified the surface current, allowing the wood debris and shells to fastly reach the core site.
ISSN: 0040-1951

hal-01467640
https://hal.archives-ouvertes.fr/hal-01467640
DOI : 10.1016/j.tecto.2015.11.001

Éditeur(s) : HAL CCSD Society for Sedimentary Geology
Résumé : International audience
Spectacular accumulations of abundant bryozoan nodules (bryoliths) occur in the early Pleistocene coarse-grained, mixed carbonate-siliciclastic deposits of the Cape Arkhangelos Calcarenite of Rhodes, Greece. These bryoliths are always associated with numerous bivalves (mostly ostreids and pectinids) and serpulid worms, together with other rarer skeletal organisms. The spheroidal bryoliths vary in diameter from I cm to 16 cm, and those with a more ellipsoidal shape range from 0.8 cm to 22 cm in length and from 0.7 cm to 16 cm in width; an elongated bryolith of exceptional size (40 cm) was even found. The bryoliths are composed almost exclusively of the anascan cheilostome Calpensia nobilis and are nucleated on gravels, pebbles, or bivalve shells. After settlement of bryozoan crusts, the bryoliths increased in size by repeated overturning of these mobile hard substrates by longshore currents. The bryoliths developed at depths of 20-40 m on a flat shoal between emerged areas where bottom currents episodically accelerated during storms. The currents also transported the bryoliths, together with other skeletal elements, into deeper settings (40-80 m) where they could continue their growth, upward or downward, or be colonized by other organisms.
ISSN: 0883-0351

hal-00475576
https://hal.archives-ouvertes.fr/hal-00475576
DOI : 10.2110/palo.2009.p09-024r

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Diverse, abundant and usually well-preserved communities of skeletal organisms occur in the lower Pleistocene (Gelasian) siliciclastic deposits of the Greek island of Rhodes. Benthic foraminifers, molluscs and bryozoans have been studied in four measured and sampled sections located in the northern part of the island. Among these bottom-dwelling organisms, numerous extant taxa are good environmental indicators and, combined with field observations and sedimentological data, they provide information on the probable conditions in which they developed. The siliciclastic deposits of the Kritika Formation have been divided into 14 different bio- and lithofacies, which have been further grouped into four facies associations corresponding to four different environmental settings: (1) continental to fluviatile; (2) brackish-water (lagoonal/deltaic); (3) infralittoral (0–20 m); and (4) upper circalittoral (depths of 20–40 m, but also down to c. 50–60 m). Among the marine facies associations, several characteristic biocoenoses have been recognized: soft-bottoms (fine to coarse sands and gravels); seagrass meadows; biogenic calcareous crusts on drowned beachrock slabs; red algal rhodoliths; and bivalve shell beds. In the studied sections, 13 superimposed genetic sequences have been documented. The repetition of similar facies associations within each sequence suggests: (1) a possibly eustasy-controlled, cyclic sedimentation; (2) a general subsidence of Rhodes during the deposition of the studied facies associations; and (3) a mostly constant range of environmental conditions (i.e. sedimentation rates and temperature) throughout the Gelasian.
ISSN: 0016-7568

hal-01277829
https://hal.archives-ouvertes.fr/hal-01277829
DOI : 10.1017/S0016756815000230

Éditeur(s) : 1st International Biennal Conference on Warm Water Aquaculture - Crustacea 02/9-11/83 Brigham Young University. Hawai
Résumé : Until recently, mollusc production in French Polynesia was only based upon fishing, for local consumption of edible bivalves mainly the oyster Saccostrea cucullata and for the exportation of pearl-oyster shells. As a consequence of parasitism problems on local oysters, a mollusc program was initiated by developping hatchery technics on introduced species of edible bivalves, Saccostrea echinata and Perna viridis, and cultivation methods in specialyy fitted up areas. Concerning pearl oyster Pinctada margaritifera the traditional shell production activity was recently reorganized to produce black culture pearls, inducing an increased demand of young implantable pearl-oysters. Hatchery spat production proved to be unsuccessful, and technics of collection and cultivation in lagoons were set up to supply the pearl oyster farming industry, and face the depletion natural stock. [NOT CONTROLLED OCR]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1983/acte-4449.pdf
http://archimer.ifremer.fr/doc/00000/4449/

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Color polymorphism in the nacre of pteriomorphian bivalves is of great interest for the pearl culture industry. The nacreous layer of the Polynesian black-lipped pearl oyster Pinctada margaritifera exhibits a large array of color variation among individuals including reflections of blue, green, yellow and pink in all possible gradients. Although the heritability of nacre color variation patterns has been demonstrated by experimental crossing, little isknown about the genes involved in these patterns. In this study, we identify a set of genes differentially expressed among extreme color phenotypes of P. margaritifera using a suppressive and subtractive hybridization (SSH) method comparing black phenotypes with full and half albino individuals.Results: Out of the 358 and 346 expressed sequence tags (ESTs) obtained by conducting two SSH libraries respectively, the expression patterns of 37 genes were tested with a real-time quantitative PCR (RT-qPCR) approach by pooling five individuals of each phenotype. The expression of 11 genes was subsequently estimated for each individual in order to detect inter-individual variation. Our results suggest that the color of the nacre is partiallyunder the influence of genes involved in the biomineralization of the calcitic layer. A few genes involved in the formation of the aragonite tablets of the nacre layer and in the biosynthesis chain of melanin also showed differential expression patterns. Finally, high variability in gene expression levels were observed within the black phenotypes.Conclusions: Our results revealed that three main genetic processes were involved in color polymorphisms: the biomineralization of the nacreous and calcitic layers and the synthesis of pigments such as melanin, suggesting that color polymorphism takes place at different levels in the shell structure. The high variability of gene expression found within black phenotypes suggests that the present work should serve as a basis for future studies exploringmore thoroughly the expression patterns of candidate genes within black phenotypes with different dominant iridescent colors.
ISSN: 1471-2164

hal-01260141
https://hal.archives-ouvertes.fr/hal-01260141
https://hal.archives-ouvertes.fr/hal-01260141/document
https://hal.archives-ouvertes.fr/hal-01260141/file/Lemer-2015-BMCGenom-Identification.pdf
DOI : 10.1186/s12864-015-1776-x

Éditeur(s) : Elsevier
Résumé : Deep-sea bivalves of the subfamily Bathymodiolinae (family Mytilidae) are very widespread and form dense beds in reduced environments such as hydrothermal vents and cold seeps. Bathymodiolus mussels recently discovered on African cold seeps strangely resemble Gulf of Mexico and Barbados seep species. This raises intriguing questions regarding their taxonomic relationships and their dispersal capabilities across the Atlantic equatorial belt. The morphological study of the shell and soft parts of mussels from either sites of the Atlantic shows that they form two distinct groups: the Bathymodiolus boomerang group (also including Bathymodiolus heckerae and a species from Africa), and the Bathymodiolus childressi group (also including Bathymodiolus mauritanicus and one species from Barbados). Phylogenetic relationships inferred from the nucleotide sequences of the ribosomal DNA internal transcribed spacer (ITS-2) and mitochondrial cytochrome c oxidase subunit I (COI) confirmed morphological analyses and the existence of two amphi-Atlantic complexes of species. Both ITS2 and COI phylogenies indicate almost no difference between the two eastern Atlantic seep mussels (Bathymodiolus sp. A and B. mauritanicus) and their western Atlantic counterparts (B. boomerang and Bathymodiolus sp. B; Barbados Prism cold seeps). In the B. boomerang complex, B. heckerae seems to differ from the Barbados and the African species, whereas these latter two are not distinguishable. In the B. childressi complex, relationships are less clear and do not support the description of new species from the Barbados. Past and present-day connections across the Atlantic are discussed in the light of both larval dispersal capabilities of the mussels and the equatorial Atlantic circulation to appreciate whether these species could represent true amphi-Atlantic species.
Deep Sea Research Part I: Oceanographic Research Papers (0967-0637) (Elsevier), 2007-11 , Vol. 54 , N. 11 , P. 1890-1911

Droits : 2007 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-4064.pdf
DOI:10.1016/j.dsr.2007.07.004
http://archimer.ifremer.fr/doc/00000/4064/

Éditeur(s) : Springer
Résumé : Pearl oysters belonging to the genus Pinctada (Bivalvia: Pteriidae) are widely distributed between the Indo-Pacific and western Atlantic. The existence of both widely distributed and more restricted species makes this group a suitable model to study diversification patterns and prevailing modes of speciation. Phylogenies of eight out of the 11 currently recognised Pinctada species using mitochondrial (cox1) and nuclear (18S rRNA) data yielded two monophyletic groups that correspond to shell size and presence/absence of hinge teeth. Character trace of these morphological characters onto the molecular phylogeny revealed a strong correlation. Pinctada margaritifera appears polyphyletic with specimens from Mauritius grouping in a different clade from others of the French Polynesia and Japan. Hence, P. margaritifera might represent a species complex, and specimens from Mauritius could represent a different species. Regarding the putative species complex Pinctada fucata/Pinctada martensii/Pinctada radiata/Pinctada imbricata, our molecular analyses question the taxonomic validity of the morphological characters used to discriminate P. fucata and P. martensii that exhibited the lowest genetic divergence and are most likely conspecific as they clustered together. P. radiata and P. imbricata were recovered as monophyletic. The absence of overlapping distributions between sister lineages and the observed isolation by distance suggests that allopatry is the prevailing speciation mode in Pinctada. Bayesian dating analysis indicated a Miocene origin for the genus, which is consistent with the fossil record. The northward movement of the Australian plate throughout the Miocene played an important role in the diversification process within Pinctada.
Marine Biotechnology (1436-2228) (Springer), 2011-04 , Vol. 13 , N. 2 , P. 181-192

Droits : Springer Science+Business Media, LLC 2010
http://archimer.ifremer.fr/doc/00035/14635/14015.pdf
DOI:10.1007/s10126-010-9278-y
http://archimer.ifremer.fr/doc/00035/14635/

Éditeur(s) : World Aquaculture Society, Aquaculture 2006
Résumé : Oysters are among the most familiar of all marine invertebrate taxa. However our knowledge of oyster phylogeny and systematics is fragmentary. This is principally due to the plastic growth patterns of these animals, which result in a wide range of overlapping, ecophenotypic variants that greatly reduce the value of analysis based on shell morphology. Besides that, many intentional or accidental anthropogenic transfers have emphasised this situation. In several cases of misclassification or misidentification of oysters, DNA molecular data, have provided valuable new insights on the tracing of introductions or more generally on the phylogeographic relationships between oyster species. We will illustrate this issue with recent case studies from our lab on several flat and cupped oysters: (1) the Crassostrea gigas – Crassostrea angulata couple of Asian species and their successive introductions in Europe, (2) the new species of cupped oysters, Crassostrea honkongensis, described in Hong-Kong and very divergent from the species Crassostrea gigas it was initially supposed to be, (3) the mangrove oyster Crassostrea gasar that was shown not only to be present along the coasts of Western Africa but also along the Atlantic coasts of South America, and (4) the geographic disjunction between Ostreola stentina, described in the Mediterranean Sea, and the genetically closely related species Ostrea aupouria (from New Zealand) and Ostreola equestris (from Mexico Gulf/Atlantic). At the intra specific level, we will focus on one of the main documented case in Europe, the flat oyster, Ostrea edulis. It is a marine bivalve whose natural geographical distribution ranges along the European Atlantic coast from Norway to Morocco, in addition to the Mediterranean and Black Sea. Studies of allozymes, microsatellites and mitochondrial differentiation over the whole range concluded that a significant divergence existed between Mediterranean and Atlantic populations, together with an isolation-by-distance pattern. However, the average mitochondrial haplotypic diversity displayed a high among populations variance, reflecting smaller effective population size in some locations. Additionally, a ten-fold quantitative difference was observed in the same study in Fst between the mitochondrial and the nuclear genomes, which could be due to sex biased differential reproductive success between males and females. In order to further document this hypothesis, two experiments at the population level were conducted. First, brooding females were sampled in a wild population and the number of males fertilizing a given female estimated. Then, parentage analyses were achieved under experimental conditions: successive mass spawnings were collected from a population of potential genitors kept in hatchery, whose genotypes were known, in order to infer a posteriori the relative contribution of each genitor. Moreover, we aimed to better understand the reproduction dynamics of this species. Several patterns of spawning could be distinguished: unique, successive or extended in time. The different parental contributions and reproductive behaviors observed in these experiments are discussed in the context of the hypothesis of a variance in the reproductive success of males and females and consequences in local and temporal reduced effective population sizes.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/acte-3475.pdf
http://archimer.ifremer.fr/doc/00000/3475/