Éditeur(s) : HAL CCSD
Résumé : One of the major challenges in forest ecology is to understand the ecology, physiology and potential responses of the> 250000 species of vascular plants of the planet through the categorization of this diversity into functional groups. This approach is essentially based on functional traits analysis, but few investigations were made in tropical areas. The aim of this study was to determine functional groups in two contrasted tropical ecosystems, dry (DF) and mountain rain (MRF) forest (respectively rainfall of 1 200 mm/year and 10 000 mm/year). Guadeloupe Island in FWI presents both these ecosystems spread over less 100 km. In a first time, we developed an original species typology based on 7 "soft" traits, easy to measure (stomatal density, leaf trichom density, chlorophyll content, leaf nitrogen content, specific leaf area, wood density, leaf area, plant height). The method was based on principal component analysis (PCA) and agglomerative hierarchical clustering (AHC) applied to these traits measured at the individual level (Blazy et al., 2009). In a second time, we evaluated the relevance of these soft trait-based groups compared to a typology based on 5 "hard" ecophysiological traits, more costly to quantify but with higher functional significance (difference between predawn and minimum leaf water potential, stomatal conductance, maximal carbon assimilation rate, leaf water potential at 90% of loss of stem hydraulic conductivity). When performed on the dominant canopy species in DF and MRF (a total of 13 species and 60 mature individuals), the typological approach based on soft traits seems relevant to discriminate groups with a distinct functional reality. Through both ecosystems, we obtained 4 homogenous groups. Two were exclusively composed by DF's or MRF's species, indicating that a functional strategy can be linked to specific environmental conditions. The two other groups showed a mix of DF and MRF species indicating that different functional strategies can coexist in the same environment. These mixed groups seem distinct by their ecophysiological features, particularly in term of hydraulic characteristics. One group was composed by drought tolerant species, water spender species, with a high xylem embolism resistance, whereas the second one was composed by water saver species, less resistant to embolism. Therefore, a determination of functional groups based on soft traits could be useful to model ecosystem's responses to environmental changes on a global scale.
Book of Abstracts - isem 2013 - Ecological Modelling for Ecosystem Sustainability
Toulouse, France

hal-00964668
https://hal.archives-ouvertes.fr/hal-00964668

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.
ISSN: 1932-6203

hal-01260289
https://hal.archives-ouvertes.fr/hal-01260289
PRODINRA : 342930
DOI : 10.1371/journal.pone.0141488

Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Although heterokaryons have been reported in nature, multicellular organisms are generally assumed genetically homogeneous. Here, we investigate the case of arbuscular mycorrhizal fungi (AMF) that form symbiosis with plant roots. The growth advantages they confer to their hosts are of great potential benefit to sustainable agricultural practices. However, measuring genetic diversity for these coenocytes is a major challenge: Within the same cytoplasm, AMF contain thousands of nuclei and show extremely high levels of genetic variation for some loci. The extent and physical location of polymorphism within and between AMF genomes is unclear. We used two complementary strategies to estimate genetic diversity in AMF, investigating polymorphism both on a genome scale and in putative single copy loci. First, we used data from whole-genome pyrosequencing of four AMF isolates to describe genetic diversity, based on a conservative network-based clustering approach. AMF isolates showed marked differences in genome-wide diversity patterns in comparison to a panel of control fungal genomes. This clustering approach further allowed us to provide conservative estimates of Rhizophagus spp. genomes sizes. Second, we designed new putative single copy genomic markers, which we investigated by massive parallel amplicon sequencing for two Rhizophagus irregularis and one Rhizophagus sp. isolates. Most loci showed high polymorphism, with up to 103 alleles per marker. This polymorphism could be distributed within or between nuclei. However, we argue that the Rhizophagus isolates under study might be heterokaryotic, at least for the putative single copy markers we studied. Considering that genetic information is the main resource for identification of AMF, we suggest that special attention is warranted for the study of these ecologically important organisms.
ISSN: 1759-6653

Droits : http://creativecommons.org/licenses/by/
hal-01224215
http://hal.upmc.fr/hal-01224215
http://hal.upmc.fr/hal-01224215/document
http://hal.upmc.fr/hal-01224215/file/Genome%20Biol%20Evol-2015-Boon-505-21.pdf
DOI : 10.1093/gbe/evv002

Éditeur(s) : HAL CCSD
Résumé : International audience
BackgroundTree above ground biomass (AGB) is currently estimated by tree-level allometrical models that take into account, tree volume estimated from proxy variables of tree size (DBH) and species average wood specific gravity (WSG). These methods are common and realistic from a practical point of view. However, they do not take into account deviance from fixed allometrical trajectories and species or tree level WSG variations. Here, we present Xtrawood software that allows computation of tree AGB according to structure and WSG variations.MethodXtrawood reconstructs tree structure and integrates WSG variations by merging tree structure and WSG data measured at different position in trees, leading to the computation of global AGB and visualization of WSG variation along tree structure. Tree structure is measured according to stem dimensions (length, diameter) and positions within tree, and encoded in Multiscale Tree Graph format (MTG). WSG data is made of radial WSG profiles (1 measure each 0,5 cm from pith to bark) sampled at different heights within whole tree. Xtrawood output are illustrated using a dataset collected on an Amazonian forest ‘biomass dominant species’, Dicorynia guianensis Amsh., also known to exhibit substantial WSG gradients along both radial and vertical axis. 9 trees ranging from 15 to 60 cm DBH were measured by climbers. Each tree was felled and samples were collected at different positions (3 in trunk, 1 to 5 in crown) to record WSG radial profiles.ResultsXtrawood allows computation of tree volume, but also visualization of WSG variations in tree as well as inference of WSG radial profiles at different heights. Output variables are decomposed according to different tree scale and locations (axis, trunk/crown) and easy to extract. Xtrawood results will be compared to those of standard estimation method and can be used to identify positions in trees where WSG value leads to the better estimate of tree AGB.Conclusion/perspectiveXtrawood produces AGB estimate with data from intensive measurements practices. The sampling protocol, used here, remains destructive and time-consuming because Xtrawood is not directly dedicated to forest managers, but to help calibration of realistic sampling strategies. Moreover, Xtrawood offers a way to understand relationships between tree development, WSG variations within tree structure and biomass accumulation in the context of natural forests or plantations. A software demo is available at coffee break.
53rd Annual Meeting of the Association for Tropical Biology and Conservation (ATBC 2016)
Montpellier, France

Droits : http://creativecommons.org/licenses/by/
hal-01349613
https://hal.archives-ouvertes.fr/hal-01349613

Éditeur(s) : HAL CCSD
Résumé : The genus Cecropia includes pioneer trees that colonize canopy gaps and cleared areas. It is widely distributed from Mexico to Northern Argentina. Cecropia trees have architecture, which corresponds to the Rauh’s architectural model. In recent studies we have found that C. obtusa/ and C. sciadophylla, in French Guiana, have a strong annual periodicity for growth, branching and flowering processes, with annual emission of 35 nodes for C. obtusa and 25 for C. sciadophylla. Those species show different life histories since C. sciadophylla has longer life expectancy. In addition, C. sciadophylla is found more frequently in forest gaps, although in French Guiana mixed populations are found. The aim of this work was to compare developmental strategies of both species in three different field stations in French Guiana and to determine how these two species coexist during its first years of life. We studied a 20-year old population of /C. sciadophylla/ at Saint Elie’s Road, a 10-year old population of /C. obtusa/ at Paracou’s field station, and a 7-year old mixed population at Counami’s Road. /C. sciadophylla /emits 25 nodes per year in both studied populations, while/ C. obtusa /emits 35 nodes in the monospecific population and 30 nodes in the mixed population. In the monocaule stage, the lower number of nodes emitted by /C. sciadophylla/ compared to /C. obtusa /is compensated with a higher internodal length, which allows finding individuals with similar ages and lengths, but different number of nodes. The branching and flowering processes start on average three years before in /C. obtusa/, however for 12-year old individuals we observed a dominancy of C. sciadophylla over C. obtusa. In the mixed population it is likely that the different life histories would decrease competition effects allowing coexistence of both species during the first stages of life
Botany 2008
Vancouver, Canada

hal-01190209
https://hal.archives-ouvertes.fr/hal-01190209
PRODINRA : 182910

Éditeur(s) : HAL CCSD
Résumé : site web du Colloque disparu
Parmi les stratégies innovantes visant à promouvoir des agricultures doublement performantes, figure l’utilisation de la biodiversité. Dans cet article, nous nous interrogeons sur les processus d’apprentissage qui favorisent la conception « intelligente » de systèmes de culture. A partir de l’exemple de la valorisation des mycorhizes indigènes à la Martinique (symbioses entre plantes et champignons du sol), nous déterminons les freins et les leviers à la co-construction et à l’adoption d’innovations de rupture pour la modernisation écologique de l’agriculture. Les résultats d’une démarche participative conduite avec un échantillon d’agriculteurs ouverts aux pratiques agroécologiques montrent que l’importance et la nature des freins diffèrent selon la dynamique d’apprentissage dans laquelle ils s’insèrent. Ainsi, les « mieux apprenants » passent plus facilement de la phase de partage de connaissances (K) à la conception d’innovations (C) en identifiant mieux que les « moins apprenants » les leviers d’action (P) à mettre en œuvre.
51. Colloque ASRDLF : Métropolisation, cohésion et performance, quels futurs pour nos territoires ?
Marne La Vallée, France

hal-01606460
https://hal.archives-ouvertes.fr/hal-01606460
PRODINRA : 387727