Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Socioeconomic inequalities in cancer mortality have been observed in different European countries and the US until the end of the 1990s, with changes over time in the magnitude of these inequalities and contrasted situations between countries. The aim of this study is to estimate relative and absolute educational differences in cancer mortality in France between 1999 and 2007, and to compare these inequalities with those reported during the 1990s. METHODS: Data from a representative sample including 1% of the French population were analysed. Educational differences among people aged 30--74 were quantified with hazard ratios and relative indices of inequality (RII) computed using Cox regression models as well as mortality rate difference and population attributable fraction. RESULTS: In the period 1999--2007, large relative inequalities were found among men for total cancer and smoking and/or alcohol related cancers mortality (lung, head and neck, oesophagus). Among women, educational differences were reported for total cancer, head and neck and uterus cancer mortality. No association was found between education and breast cancer mortality. Slight educational differences in colorectal cancer mortality were observed in men and women. For most frequent cancers, no change was observed in the magnitude of relative inequalities in mortality between the 1990s and the 2000s, although the RII for lung cancer increased both in men and women. Among women, a large increase in absolute inequalities in mortality was observed for all cancers combined, lung, head and neck and colorectal cancer. In contrast, among men, absolute inequalities in mortality decreased for all smoking and/or alcohol related cancers. CONCLUSION: Although social inequalities in cancer mortality are still high among men, an encouraging trend is observed. Among women though, the situation regarding social inequalities is less favourable, mainly due to a health improvement limited to higher educated women. These inequalities may be expected to further increase in future years.
ISSN: 1471-2458

inserm-00868759
http://www.hal.inserm.fr/inserm-00868759
http://www.hal.inserm.fr/inserm-00868759/document
http://www.hal.inserm.fr/inserm-00868759/file/1471-2458-13-823.pdf
DOI : 10.1186/1471-2458-13-823

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Active faults from the Campo de Dalías (SE Betic Cordillera) allow us to constrain the deformation styles involved in the development of segmented oblique-slip faults. This sector constitutes the widest outcrop of Plio-Quaternary sediments in the northern boundary of the Alboran Sea. It has emerged since the Late Pliocene, and therefore provides recent deformation markers that are not disturbed by erosive processes. The faults started to grow during the Pleistocene, reactivating previous hybrid joints, with a normal-dextral slip. We present a detailed map of the largest fault in the area, the Loma del Viento fault, comprising six onshore segments. Based on field work and aerial photography, the distributions of the contiguous joints have been mapped, and the joints reactivated as faults are identified. Some of these fault segments are hard-linked, and fault slip enhances toward the linkage sectors between them with associated sedimentary depocenters. An electrical tomography profile reveals the wedge geometry of a unit of Pleistocene conglomerates and red silts that were coevally deposited during the fault movement. Long-term slip rate in the central part of the fault is estimated at 0.07 ± 0.03 mm/y. In addition, a seismic crisis nucleated close to the Loma del Viento fault during November 2010 was recorded. Moment tensor analysis of the two mainshocks (Mw 3.5 and 4.2) provides a focal solution indicating a N120°E striking right-lateral strike-slip fault. The corrugated morphology of the Loma del Viento fault may have influenced its seismic behavior. Some of the fault segments are oblique to the general motion of the fault. These oblique segments would provide higher resistance against the general fault motion and could lock the fault, leading to accumulate elastic energy.
ISSN: 0040-1951

hal-00750357
https://hal.archives-ouvertes.fr/hal-00750357
DOI : 10.1016/j.tecto.2011.12.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The potential effects of the mineralogical composition of sediment on the degradation of oil buried on sandy beaches were investigated. Toward that purpose, a laboratory experiment was carried out with sandy sediment collected along NW Iberian Peninsula beaches, tar-balls from the Prestige oil spill (NW Spain) and seawater. The results indicate that the mineralogical composition is important for the physical appearance of the oil (tar-balls or oil coatings). This finding prompted a reassessment of the current sequence of degradation for buried oil based on compositional factors. Moreover, the halo development of the oil coatings might be enhanced by the carbonate concentration of the sand. These findings open new prospects for future monitoring and management programs for oiled sandy beaches.
ISSN: 0025-326X

hal-01122779
https://hal.archives-ouvertes.fr/hal-01122779
DOI : 10.1016/j.marpolbul.2014.06.040

Éditeur(s) : HAL CCSD
XVIII International Botanical Congress - IBC 2011
Melbourne, Australia

hal-01032388
https://hal.archives-ouvertes.fr/hal-01032388