Éditeur(s) : Elsevier
Résumé : The aim of this study was to distinguish between sources of the complex variety of Marennes-Oléron Bay suspended particulate organic matter (SPOM) contributing to the tropho-dynamics of the Marennes-Oléron oyster farming bay. Basic biomarkers (Chl a, C/N and POC/Chl a ratios), carbon and nitrogen stable isotopes from SPOM were analyzed and the microalgae community was characterized. The sampling strategy was bimonthly from March 2002 to December 2003; samples were taken from an intertidal mudflat. Four main sources contributed to the SPOM pool: terrigenous input from rivers, neritic phytoplankton, resuspended microphytobenthos and periodic inputs from intertidal Zostera noltii meadows. Seasonal fluctuations were observed in both years of the study period: (1) SPOM collected in the spring of 2002 (δ13C = −250/00 to −230/00) was mainly composed of fresh estuarine inputs; (2) SPOM from the summer and fall of 2002 and 2003 was predominantly neritic phytoplankton (δ13C = − 220/00 to −190/00); (3) SPOM from the winter of 2002, spring of 2003 and winter of 2003 (δ13C = −21 to −230/00) was composed of a mixture of decayed terrigenous river inputs and pelagic phytoplankton, which was predominantly resuspended microphytobenthos. In the summer of 2003—the warmest summer on record in southern France and Europe—SPOM was particularly enriched for 13C, with δ13C values ranging from −140/00 to −120/00. Pulses in δ13C values, indicative of 13C-enriched decaying materials, extended into the fall. These were attributed to benthic intertidal inputs, including both resuspended microphytobenthos and Z. noltii detritus. Changes in SPOM sources in Marennes-Oléron Bay may lead to differences in the quality of the trophic environment available for reared oysters.
Estuarine, Coastal and Shelf Science (0272-7714) (Elsevier), 2008-07 , Vol. 78 , N. 3 , P. 576-586

Droits : 2008 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2008/publication-4313.pdf
DOI:10.1016/j.ecss.2007.11.001
http://archimer.ifremer.fr/doc/00000/4313/

Éditeur(s) : Springer
Résumé : Batch culture experiments using viral enrichment were conducted to test the response of a coastal bacterial community to autochthonous (i.e., co-existing) or allochthonous riverine viruses. The effects of viral infections on bacterial dynamics and activity were assessed by epifluorescence microscopy and thymidine incorporation, respectively, whereas the effect of viral infection on bacterial community composition was examined by polymerase chain reaction-single strand conformation polymorphism 16S ribosomal RNA fingerprinting. The percentages of high nucleic acid-containing cells, evaluated by flow cytometry, were significantly correlated (r (2) = 0.91, n = 12, p < 0.0001) to bacterial production, making this value a good predictor of active cell dynamics along the study. While confinement and temperature were the two principal experimental factors affecting bacterial community composition and dynamics, respectively, additions of freshwater viruses had significant effects on coastal bacterial communities. Thus, foreign viruses significantly reduced net bacterial population increase as compared to the enrichment treated with inactivated virus. Moreover, freshwater viruses recurrently and specifically affected bacterial community composition, as compared to addition of autochthonous viruses. In most cases, the combined treatment viruses and freshwater dissolved organic matter helped to maintain or even enhance species richness in coastal bacterial communities in agreement to the 'killing the winner' hypothesis. Thus, riverine virus input could potentially influence bacterial community composition of the coastal bay albeit with modest modification of bulk bacterial growth.
Microbial Ecology (0095-3628) (Springer), 2009-02 , Vol. 57 , N. 2 , P. 295-306

Droits : 2009 Springer
http://archimer.ifremer.fr/doc/2009/publication-6636.pdf
DOI:10.1007/s00248-008-9428-1
http://archimer.ifremer.fr/doc/00000/6636/

Éditeur(s) : Elsevier
Résumé : Sediment cores were collected from April to August 2004 on tidal mudflats of the macrotidal Marennes-Oléron Bay (SW France), famous for the cultivation of Pacific oysters (Crassostrea gigas). The response of living (stained) benthic foraminifera to short-term biogeochemical disturbances in the sediment and overlying water, which may be involved in oyster summer mortality, was monitored. Short-term hypoxia occurred in early June, in conjunction with a sudden rise in temperature. In mid-June, the ammonia content of sediment porewater increased, leading to potentially maximal flux towards overlying waters. Foraminiferal assemblages, particularly in the topmost layer, were altered. Ammonia tepida was the most tolerant to temperature increase and hypoxic conditions whereas Brizalina variabilis and Haynesina germanica were sensitive to organic degradation and hypoxia. Cribroelphidium gunteri was the most opportunistic during recolonisation. Benthic foraminifera showed that short-term biochemical changes in the sediment are toxic and may be involved in the summer mortality of Pacific oysters.
Marine Environmental Research (0141-1136) (Elsevier), 2007-09 , Vol. 64 , N. 3 , P. 358-383

Droits : 2007 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2007/publication-2586.pdf
DOI:10.1016/j.marenvres.2007.02.007
http://archimer.ifremer.fr/doc/00000/2586/

Éditeur(s) : Cushman Foundation for Foraminiferal Research
Résumé : Large populations of the living benthic foraminifera Quinqueloculina carinatastriata (Wiesner, 1923) are reported for the first time from intertidal mudflats of the French Atlantic coast (Marennes-Oléron Bay and Ile de Ré). Maximum abundance of living specimens was recorded in early autumn. The species was previously described from the Adriatic and Tyrrhenian Seas (central Mediterranean Sea) and reported from the Eastern Mediterranean and Red Seas, as well as tropical and subtropical regions. A survey of available literature to trace records of the species in muddy shallow habitats along the western coasts of Europe and Africa reveals that the species is unrecorded from the Western Mediterranean Sea and is unknown in the eastern Atlantic Ocean from the Ivory Coast to Denmark, including the British Isles. This supports the hypothesis that the species has been accidentally introduced outside its natural range as a probable result of mariculture trade and/or shipping activities. This is the first report of a successful introduction of a non-indigenous benthic foraminifera to the Atlantic coast of Europe.
The Journal of Foraminiferal Research (0096-1191) (Cushman Foundation for Foraminiferal Research), 2007-07 , Vol. 37 , N. 3 , P. 204-212

Droits : Cushman Foundation for Foraminiferal Research
http://archimer.ifremer.fr/doc/2007/publication-2587.pdf
DOI:10.2113/gsjfr.37.3.204
http://archimer.ifremer.fr/doc/00000/2587/

Éditeur(s) : Université de la Rochelle
Résumé : In order to better understand the functioning of the Brouage intertidal mudflat (Marennes- Oléron Basin, France), its carbon-based trophic web has been modelled and analyzed. The foodweb building is based on the 4 step method of Inverse Analysis: 1) conceive an a priori model as the graph of compartments (nodes) between which exist fluxes of material (vertices). These vertices are the unknowns for the problem; 2) gather all the existing knowledge about the ecosystem and translate it into linear equations and inequalities involving the fluxes; 3) complete this set of data by common knowledge on the behaviour of the compartments and translate it into inequalities, 4) solve the obtained linear system under the parsimony principle to find a unique solution vector. The food-web analysis is based on. The first purpose of this work was a methodological one: inverse analysis method has been adapted to consider the seasonal and spatial variability of the temperate ecosystem: two seasons have been coupled in the computation and the area has been divided into three geographical zones along a cross-shore gradient. Hence, two types of physical exchanges are involved: the benthicpelagic ones and the advection ones. Statistical results can also be obtained by coupling Monte Carlo methods to Inverse Analysis. To study the obtained networks, new indices based on Markov Chains take delay into account in describing integrative transfers of material between compartments. This lets emerge the systems' properties that are not obvious at first sight and emphasizes the role of peculiar components. The second purpose was to apply such methods to the Brouage mudflat ecosystem in order to better understand its functioning. As the knowledge and methods evolve, various food webs were computed and analyzed with the help such indices and existing ones. Sensitivity analyses allow to point at the most crucial lacks of knowledge, which can orientate future field research. New data would improve the quality of the model in two ways: one the one hand, they would validate or invalidate the outcomes and on the other hand, they would give useful information to better constrain some of the black boxes and most uncertain fluxes, especially the advection and vertical flows. The main results of the study show a strongly seasonal system in which benthic and pelagic components are linked with intensity. The system is driven by its high local benthic primary production, but also depends on imports from the basin. Each of the 3 geographic zones has a peculiar functioning. The central zone corresponds to the classical description of European intertidal mudflats: very productive, it can feed the other regions. It is a production zone. The upper part is less productive but is fed by the middle one via the water column and can be exploited by shorebirds. It is a degradation zone (material is transformed for less qualitative). The lower part strongly depends on the basin imports for its functioning, as the cultivated bivalves act as a pump for pelagic material of which a great part is deposited under the cultivation structures (oyster racks or mussels "bouchots"). It is a transformation zone.
Un double objectif (méthodologique et appliqué) a été visé par une modélisation du réseau trophique de la vasière de Brouage (Bassin de Marennes Oléron, France) à l'aide de l'analyse inverse, et son étude à l'aide de l'analyse des réseaux. L'Analyse Inverse permet en effet de reconstruire l'ensemble du réseau à partir de données éparses, le problème du manque de données étant récurrent en Ecologie. Au plan méthodologique, l'analyse inverse a été adaptée à la prise en compte des caractères saisonnier et spatialement hétérogène d'un écosystème tempéré de zone intertidale : deux saisons ont ainsi été couplées et la vasière a été considérée le long d'un transect perpendiculaire au rivage et divisé en trois zones spatiales. Deux types de flux physiques interviennent donc : les flux verticaux de dépôt et remise en suspension, et les flux d'advection via la colonne d'eau. Des pistes d'amélioration et de nouvelles méthodes sont proposées. Un résultat sous forme statistique peut être obtenu en couplant l'utilisation de méthodes de Monte Carlo à l'analyse inverse pour la construction des réseaux trophiques. Les moyens d'étude des modèles ont été enrichis par la mise au point d'indices issus de la construction de chaînes de Markov et prenant en compte le caractère temporel des transferts de matière entre compartiments. Enfin, la transformation mathématique du modèle statique pour une étude dynamique de la stabilité de l'équilibre décrit est abordée. Plusieurs modèles ont été construits au cours de l'évolution des méthodes et de l'acquisition de connaissances sur le site. Des méthodes d'analyses existantes et d'autres mises au point dans le cadre de cet ouvrage ont été appliquées aux réseaux obtenus afin de faire émerger les propriétés du fonctionnement de la vasière et de souligner le rôle de certains compartiments. Des analyses de sensibilité permettent d'évaluer la robustesse des résultats et d'orienter les recherches futures en mettant en évidence les manques les plus cruciaux. Des données supplémentaires, notamment concernant les foraminifères benthiques, le zooplancton ou les mouvements verticaux du microphytobenthos permettront de fournir de meilleures contraintes et de valider (ou non) les résultats obtenus. Les principaux résultats montrent un système au fort caractère saisonnier dont les compartiments benthiques et pélagiques sont très liés. La production primaire benthique locale est un moteur important, mais qui ne suffirait pas à suppléer l'indispensable importation de matériel détritique. Le découpage de la vasière en trois zones fait apparaître les particularités de chacune. La zone centrale correspond à la description classique des « vasières intertidales européennes » : très productive, elle peut alimenter les autres régions. C'est une zone de production et d'exportation. La partie supérieure est moins productive et reçoit de la matière de la zone de milieu d'estran via la colonne d'eau. Sa production secondaire peut alors être exploitée par les limicoles, nombreux en hiver. C'est une zone de dégradation et d'exportation. Le bas d'estran dépend fortement des importations extérieures, « pompées » par les bivalves cultivés qui sont ainsi directement responsables d'une forte sédimentation sous les structures mytilicoles et ostréicoles. C'est une zone de transformation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2260.pdf
http://archimer.ifremer.fr/doc/00000/2260/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Deposit feeders are able to process a considerable volume of sediment, containing large 9 quantities of associated bacteria. However, conclusions concerning the trophic role played by 10 benthic bacteria in marine sediments are still not fully elucidated. This study deals with 11 bacterivory by the gastropod Hydrobia ulvae, one of the most abundant deposit-feeding 12 species in intertidal mudflats in Western Europe. Ingestion rates of bacteria were determined 13 during grazing experiments using 15 N pre-enriched bacteria. Grazing experiments were 14 performed in order to measure effects of abiotic (temperature, salinity and luminosity) and 15 biotic (bacterial and algal abundances) factors on ingestion rates of bacteria by H. ulvae of an 16 intertidal mudflat (Brouage, Marennes-Oléron, France). The mean ingestion rate of bacteria 17 by H. ulvae was 1149 ngC ind-1 h-1. The general trend showed a temperature effect with an 18 optimum around 30°C, and the assimilation rate was significantly lower at 5°C. Bacterial 19 assimilation did not significantly differ between salinity 18 and salinity 31. Ingestion was the 20 same in light and in dark conditions. Results were compared with those of other grazing 21 experiments conducted simultaneously in similar conditions with two other grazers with 22 different size and feeding modes: the foraminifera Ammonia tepida and a nematode 23 community from the superficial sediment of the Brouage mudflat. Hydrobia ulvae and 24 nematodes presented a feeding behavior less influenced by environmental changes than A. tepida. Hydrobia ulvae ingested bacteria at a higher rate than smaller meiofaunal grazers and seemed to have a lower ability to selectively ingest diatoms than meiofaunal grazers.
ISSN: 1385-1101

hal-01248039
https://hal.archives-ouvertes.fr/hal-01248039
https://hal.archives-ouvertes.fr/hal-01248039/document
https://hal.archives-ouvertes.fr/hal-01248039/file/Pascal%20et%20al%202008.pdf
DOI : 10.1016/j.seares.2008.05.003

Résumé : Le Laboratoire Côtier de La Tremblade est implanté géographiquement dans le premier bassin ostréicole d'Europe (30 000 tonnes produites et 60 000 tonnes commercialisées chaque année). L'ostréiculture est une activité économique très importante en terme d'emplis, qui doit cohabiter sur un même littoral avec le tourisme et l'agriculture générant parfois des conflits d'usages (gestion de l'eau, qualité de l'eau). Les avis donnés à l'Administration ou aux collectivités locales s'appuient sur les résultats de la surveillance ou ceux émanant des études spécifiques comme les études microbiologiques locales. Les activités, les responsabilités de chacun dans le cadre ce de mandat, figurent dans le Manuel Qualité du Laboratoire. Enfin, l'assistance technique à la profession conchylicole, en matière environnementale ou de préparation à la mise en marché des coquillages revêt des formes multiples : formations données, distribution de fiches pratiques, fourniture de renseignements, interface entre professionnels et laboratoires de recherche, études spécifiques.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00074/18538/16085.pdf
http://archimer.ifremer.fr/doc/00074/18538/

Résumé : Rapport d'activité du Laboratoire de Biologie Conchylicole de La Tremblade concernant l'année 1979

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00070/18088/15636.pdf
http://archimer.ifremer.fr/doc/00070/18088/

Résumé : La compétence géographique assurée par le laboratoire dans ses fonctions concerne l'ensemble des Pertuis Charentais depuis le Sud-Vendée jusqu'à l'embouchure de la Gironde. Ce rapport d'activité tient compte de ces faits et présente par ailleurs les programmes de recherche selon la nomenclature établie dans le cadre du Plan Stratégique de l'Ifremer et dans la définition des mandats de laboratoires.

Droits : 2002 Ifremer
http://archimer.ifremer.fr/doc/00074/18551/16102.pdf
http://archimer.ifremer.fr/doc/00074/18551/

Résumé : L'ouvrage que Verger (1968) a consacré au littoral français en général et au Bassin de Marennes-Oléron en particulier est certainement le plus important document dont nous disposons dans le domaine morpho-sédimentaire. Dans cette étude, l'auteur assimile le littoral charentais aux Wadden de Hollande : cette comparaison est cependant discutable, suivant les arguments développés ci-après qui montrent les principales différences entre vasières littorales charentaises et waddens hollandais.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00082/19306/16900.pdf
http://archimer.ifremer.fr/doc/00082/19306/