Éditeur(s) : HAL CCSD Elsevier Elsevier Masson
Résumé : Thalattosuchia was a diverse clade of marine crocodylomorphs known from the Early Jurassic to the Early Cretaceous. Recent studies have hypothesized that their extinction was two-phased: (1) habitat loss near/at the Jurassic-Cretaceous boundary heavily reduced their morphofunctional diversity, particularly in Europe, while (2) climate change and a shift in marine fauna during the Early Cretaceous (either at the Valanginian-Hauterivian boundary or during the early Hauterivian) finished off the already stressed clade. Unfortunately, the Cretaceous fossil record of thalattosuchians is poor, with only one putative “teleosaurid” specimen and approximately ten metriorhynchid specimens. Here we re-describe the youngest known teleosaurid from the Cretaceous (Valanginian of south-eastern France). Originally considered to be a teleosaurid (possibly Steneosaurus), we demonstrate that it belongs to Metriorhynchidae, and a newly discovered subclade, Plesiosuchina. It differs from Plesiosuchus in the pattern of tooth enamel ornamentation and the variation in dentary alveoli size. Referring this specimen to Metriorhynchidae means there are no definitive Cretaceous teleosaurid specimens. Furthermore, it suggests that both durophagous and piscivorous teleosaurids became extinct at the end of the Jurassic. Interestingly, this is the fourth metriorhynchid lineage known to cross the Jurassic-Cretaceous boundary. As such, it would appear that the two thalattosuchian families responded very differently to the lowering sea levels at the end of the Jurassic: teleosaurids possibly became extinct, while metriorhynchids were seemingly unaffected.
ISSN: 0753-3969

hal-01122803
https://hal.archives-ouvertes.fr/hal-01122803
DOI : 10.1016/j.annpal.2014.01.002

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
In this study, we used data recorded by two consecutive passive broadband deployments on the Gulf of Aden northern margin, Dhofar region, Sultanate of Oman. The objective of these deployments is to map the young eastern Gulf of Aden passive continental margin crust and upper mantle structure and rheology. In this study, we use shear-wave splitting analysis to map lateral variations of upper mantle anisotropy beneath the study area. In this study, we found splitting magnitudes to vary between 0.33 and 1.0 s delay times, averaging about 0.6 s for a total of 17 stations from both deployment periods. Results show distinct abrupt lateral anisotropy variation along the study area. Three anisotropy zones are identified: a western zone dominated by NW-SE anisotropy orientations, an eastern zone dominat- ed with NE-SW anisotropy orientations, and central zone with mixed anisotropy orientations similar to the east and west zones. We interpret these shorter wavelength anisotropy zones to possibly represent fossil lithospheric mantle anisotropy. We postulate that the central anisotropy zone may be representing a Proterozoic suture zone that separates two terranes to the east and west of it. The anisotropy zones west and east were being used indicative of different terranes with different upper mantle anisotropy signatures.
ISSN: 1866-7411

hal-00647478
https://hal.archives-ouvertes.fr/hal-00647478
DOI : 10.1007/s12517-011-0477-2

Éditeur(s) : HAL CCSD American Association for the Advancement of Science
Résumé : International audience
Most eukaryotic organisms are arthropods. Yet, their diversity in rich terrestrial ecosystems is still unknown. Here we produce tangible estimates of the total species richness of arthropods in a tropical rainforest. Using a comprehensive range of structured protocols, we sampled the phylogenetic breadth of arthropod taxa from the soil to the forest canopy in the San Lorenzo forest, Panama. We collected 6144 arthropod species from 0.48 hectare and extrapolated total species richness to larger areas on the basis of competing models. The whole 6000-hectare forest reserve most likely sustains 25,000 arthropod species. Notably, just 1 hectare of rainforest yields >60% of the arthropod biodiversity held in the wider landscape. Models based on plant diversity fitted the accumulated species richness of both herbivore and nonherbivore taxa exceptionally well. This lends credence to global estimates of arthropod biodiversity developed from plant models.
ISSN: 0036-8075

hal-00817285
https://hal.archives-ouvertes.fr/hal-00817285
https://hal.archives-ouvertes.fr/hal-00817285/document
https://hal.archives-ouvertes.fr/hal-00817285/file/1226727Revisedtext.pdf
DOI : 10.1126/science.1226727

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The nature and extent of the regional lithosphere-asthenosphere interaction beneath Ireland and Britain remains unclear. Although it has been established that ancient Caledonian signatures pervade the lithosphere, tertiary structure related to the Iceland plume has been inferred to dominate the asthenosphere. To address this apparent contradiction in the literature, we image the 3-D lithospheric and deeper upper-mantle structure beneath Ireland via non-linear, iterative joint teleseismic-gravity inversion using data from the ISLE (Irish Seismic Lithospheric Experiment), ISUME (Irish Seismic Upper Mantle Experiment) and GRACE (Gravity Recovery and Climate Experiment) experiments. The inversion combines teleseismic relative arrival time residuals with the GRACE long wavelength satellite derived gravity anomaly by assuming a depth-dependent quasilinear velocity-density relationship. We argue that anomalies imaged at lithospheric depths probably reflect compositional contrasts, either due to terrane accretion associated with Iapetus Ocean closure, frozen decompressional melt that was generated by plate stretching during the opening of the north Atlantic Ocean, frozen Iceland plume related magmatic intrusions, or a combination thereof. The continuation of the anomalous structure across the lithosphere-asthenosphere boundary is interpreted as possibly reflecting sub-lithospheric small-scale convection initiated by the lithospheric compositional contrasts. Our hypothesis thus reconciles the disparity which exists between lithospheric and asthenospheric structure beneath this region of the north Atlantic rifted margin.
ISSN: 0956-540X

hal-00617815
https://hal.archives-ouvertes.fr/hal-00617815
DOI : 10.1111/j.1365-246X.2011.04921.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Forty years after the image of the Mediterranean transformed into a giant salty lake was first conceived, the fascinating history of the Messinian Salinity Crisis (MSC) still arouses great interest across a large and diverse scientific community. Early outcrop studies which identified severe palaeoenvironmental changes affecting the circum-Mediterranean at the end of the Miocene, were followed by investigations of the marine geology during the 1950s to 1970s. These were fundamental to understanding the true scale and importance of the Messinian event. Now, after a long period of debate over several entrenched but largely untested hypotheses, a unifying stratigraphic framework of MSC events has been constructed. This scenario is derived mainly from onshore data and observations, but incorporates different perspectives for the offshore and provides hypotheses that can be tested by drilling the deep Mediterranean basins.The MSC was an ecological crisis, induced by a powerful combination of geodynamic and climatic drivers, which had a great impact on the subsequent geological history of the Mediterranean area, and on the salinity of the global oceans. These changed the Mediterranean's connections with both the Atlantic Ocean and the freshwater Paratethyan basins, causing high-amplitude fluctuations in the hydrology of the Mediterranean. The MSC developed in three main stages, each of them characterized by different palaeoenvironmental conditions. During the first stage, evaporites precipitated in shallow sub-basins; the MSC peaked in the second stage, when evaporite precipitation shifted to the deepest depocentres; and the third stage was characterized by large-scale environmental fluctuations in a Mediterranean transformed into a brackish water lake.The very high-resolution timescale available for some Late Miocene intervals in the Mediterranean makes it possible to consider environmental variability on extremely short time scales including, in some places, annual changes. Despite this, fundamental questions remain, some of which could be answered through new cores from the deepest Mediterranean basins. Improvements in seismic imaging and drilling techniques over the last few decades make it possible to plan to core the entire basinal Messinian succession for the first time. The resulting data would allow us to decipher the causes of this extreme environmental change and its global-scale consequences.
ISSN: 0025-3227

hal-01115664
https://hal.archives-ouvertes.fr/hal-01115664
DOI : 10.1016/j.margeo.2014.02.002

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
We performed forward modelling of seismic anisotropy beneath a migrating strike-slip plate boundary to: (1) test if such a geodynamic context might explain teleseismic shear wave splitting data in the vicinity of the central part of the San Andreas Fault and (2) constrain the power of such data to unravel vertical and lateral variations in deformation patterns in the upper mantle. The modelling involves five steps: (1) thermomechanical modelling, using a finite-element code, of the deformation field, (2) viscoplastic self-consistent modelling of the resulting olivine and pyroxene crystal preferred orientations, (3) calculation of the elasticity tensors for different domains of the finite elements (FEs) model, (4) forward modelling of seismic wave propagation through the model using ray theory, finite-frequency theory and a full-wave approach and (5) performing splitting measurements on the synthetic seismograms. SKS splitting data in central California are best fitted by a model with a hotter geotherm within 60 km of the plate boundary accounting for the opening of an asthenospheric window due to the northward migration of the Mendocino Triple Junction. The westward motion of the plate boundary cannot however explain the rotation of fast polarization directions east of the San Andreas Fault in central California. Comparison between modelled and measured individual shear wave splitting also implies that the homogeneity of the two-layer models accounting for the observations in the vicinity of the San Andreas Fault indicates a sharp transition between lithospheric and asthenospheric deformations beneath this plate boundary. The ability of different synthetic approaches to localize horizontally and vertically the plate boundary-related deformation differs significantly. Splitting in ray theory synthetics closely follow variations in olivine crystallographic preferred orientations in the model. In contrast, splitting analysis on full-wave synthetics, which should be more representative of actual long-period SKS waves, results in smooth apparent lateral variations of anisotropy; the exact location and width of the plate boundary may only be retrieved by comparing fast-polarization profiles obtained using a multichannel analysis on waves with different periods.
ISSN: 0956-540X

hal-01236150
http://hal.univ-reunion.fr/hal-01236150
http://hal.univ-reunion.fr/hal-01236150/document
http://hal.univ-reunion.fr/hal-01236150/file/Bonnin_San_Andreas_modelling_GJI2012.pdf
DOI : 10.1111/j.1365-246X.2012.05650.x

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Playbacks are a useful tool for conducting well-controlled and replicated experiments on the effects of anthropogenic noise, particularly for repeated exposures. However, playbacks are unlikely to fully reproduce original sources of anthropogenic noise. Here we examined the sound pressure and particle acceleration of boat noise playbacks in a field experiment and reveal that although there remain recognized limitations, the signal-to-noise ratios of boat playbacks to ambient noise do not exceed those of a real boat. The experimental setup tested is therefore of value for use in experiments on the effects of repeated exposure of aquatic animals to boat noise.
The Effects of Noise on Aquatic Life II

ISBN : 978-1-4939-2980-1 (Print) 978-1-4939-2981-8 (Online)
hal-01270660
https://hal-univ-perp.archives-ouvertes.fr/hal-01270660
DOI : 10.1007/978-1-4939-2981-8_55

Éditeur(s) : HAL CCSD Elsevier Science
Résumé : International audience
Some anthropogenic noise is now considered pollution, with evidence building that noise from human activities such as transportation, construction and exploration can impact behaviour and physiology in a broad range of taxa. However, relatively little research has considered the effects of repeated or chronic noise; extended exposures may result in habituation or sensitisation, and thus changes in response. We conducted a field-based experiment at Moorea Island to investigate how repeated exposure to playback of motorboat noise affected a coral reef fish (Dascyllus trimaculatus). We found that juvenile D. trimaculatus increased hiding behaviour during motorboat noise after two days of repeated exposure, but no longer did so after one and two weeks of exposure. We also found that naïve individuals responded to playback of motorboat noise with elevated ventilation rates, but that this response was diminished after one and two weeks of repeated exposure. We found no strong evidence that baseline blood cortisol levels, growth or body condition were affected by three weeks of repeated motorboat-noise playback. Our study reveals the importance of considering how tolerance levels may change over time, rather than simply extrapolating from results of short-term studies, if we are to make decisions about regulation and mitigation.
ISSN: 0013-9327

Droits : http://creativecommons.org/licenses/by/
hal-01357915
https://hal-univ-perp.archives-ouvertes.fr/hal-01357915
https://hal-univ-perp.archives-ouvertes.fr/hal-01357915/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01357915/file/1-s2.0-S0269749116304468-main.pdf
DOI : 10.1016/j.envpol.2016.05.058

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
How reliable are shear wave splitting measurements as a means of determining mantle flow direction? This remains a topic of debate, especially in the context of subduction. The answer hinges on whether our current understanding of mineral physics provides enough to accurately translate between seismic observations and mantle deformation. Here, we present an integrated model to simulate strain-history-dependent texture development and estimate resulting shear wave splitting in subduction environments. We do this for a mantle flow model that, in its geometry, approximates the double-sided Molucca Sea subduction system in Eastern Indonesia. We test a single-sided and a double-sided subduction case. Results are compared to recent splitting measurements of this region by Di Leo et al. (2012a). The setting lends itself as a case study, because it is fairly young and, therefore, early textures from the slab's descent from the near surface to the bottom of the mantle transition zone--which we simulate in our models--have not yet been overprinted by subsequent continuous steady state flow. Second, it allows us to test the significance of the double-sided geometry, i.e., the need for a rear barrier to achieve trench-parallel subslab mantle flow. We demonstrate that although a barrier amplifies trench-parallel subslab anisotropy due to mantle flow, it is not necessary to produce trench-parallel fast directions per se. In a simple model of A-type olivine lattice-preferred orientation and one-sided subduction, trench-parallel fast directions are produced by a combination of simple shear and extension through compression and pure shear in the subslab mantle.
ISSN: 1525-2027

hal-01053506
https://hal.archives-ouvertes.fr/hal-01053506
DOI : 10.1002/2013GC005032