Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
During the treatment process of drinking water, disinfectants (chlorine, ozone, chlorine dioxide) react on water containing organic matter and bromide to produce disinfection by-products at trace levels. Among them, five of the nine existing halo-acetic acids (HAAs) are commonly found in drinking water (monochloroacetic acid (MCAA), dichloroacetic acid (DCAA), monobromoacetic acid (MBAA), dibromoacetic acid (DBAA), and Trichloroacetic acid (TCAA)), including four classified in the 2B IARC group of potential carcinogens (BCAA, DBAA, DCAA, TCAA). With respect to drinking water quality, guidelines are proposed by WHO (2006) and water quality standards are imposed in many countries such as less than 100 μg/L for the sum of the five HAAs by US EPA (1998) and Canadian Health Department (2008). For this purpose, two analytical methods are commonly used, GC/MS with derivatization and LC/MS, UV or conductivity. A new method, based on two-dimensional ion chromatography (IC 2D) with suppressed conductivity is proposed. This method presents the main advantage of offering a quick implementation compared to GC or LC methods: direct injection, slight maintenance, lower cost of investment, by leading to good performances (specificity and sensitivity). The use of two different selectivity columns, and the fractionation on the first dimension canceling interferences, improves the specificity. The sensitivity is enabled by interfacing a preconcentration column between the two different internal diameter columns. The analytical conditions are optimized for the analysis of nine HAAs. The performances of the method are evaluated. The optimized method applied to natural water samples demonstrates its ability to quantify HAAs at trace levels in drinking water.
Microchemical Journal

hal-00877151
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00877151
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00877151/document
DOI : 10.1016/j.microc.2013.07.012

Éditeur(s) : HAL CCSD
Résumé : International audience
The Glaser-Eglinton reaction between either two C or N propargylglycine (Pra or NPra) amino acids, in the presence of copper(II), led to cyclic hexa- and octapeptides constrained by a butadiyne bridge. The on-resin cyclization conditions were analyzed and optimized. The consequences of this type of constraint on the three dimensional structure of these hexapeptides and octapeptides were analyzed in details by NMR and molecular dynamics. We show that stabilized short cyclic peptides could be readily prepared via the Glaser oxidative coupling either with a chiral (Pra), or achiral (NPra) residue. The 1,3-butadiyne cyclization, along with disulfide bridged and lactam cyclized hexapeptides expands the range of constrained peptides that will allow exploring the breathing of amino acids around a β-turn structure.
Bioorganic and Medicinal Chemistry

hal-01091920
https://hal.archives-ouvertes.fr/hal-01091920
PUBMED : 25456082
DOI : 10.1016/j.bmc.2014.10.026

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
: Previously, we demonstrated that eicosapentaenoic acid enhanced ethanol-induced oxidative stress and cell death in primary rat hepatocytes via an increase in membrane fluidity and lipid raft clustering. In this context, another n-3 polyunsaturated fatty acid, docosahexaenoic acid (DHA), was tested with a special emphasis on physical and chemical alteration of lipid rafts. Pretreatment of hepatocytes with DHA reduced significantly ethanol-induced oxidative stress and cell death. DHA protection could be related to an alteration of lipid rafts. Indeed, rafts exhibited a marked increase in membrane fluidity and packing defects leading to the exclusion of a raft protein marker, flotillin. Furthermore, DHA strongly inhibited disulfide bridge formation, even in control cells, thus suggesting a disruption of protein-protein interactions inside lipid rafts. This particular spatial organization of lipid rafts due to DHA subsequently prevented the ethanol-induced lipid raft clustering. Such a prevention was then responsible for the inhibition of phospholipase C-γ translocation into rafts, and consequently of both lysosome accumulation and elevation in cellular low-molecular-weight iron content, a prooxidant factor. In total, the present study suggests that DHA supplementation could represent a new preventive approach for patients with alcoholic liver disease based upon modulation of the membrane structures.
ISSN: 0278-6915

hal-00860153
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00860153
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00860153/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00860153/file/Sergent-et-al-incl-figures-accepted.pdf
DOI : 10.1016/j.fct.2013.07.061

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Plasma membrane is an early target of polycyclic aromatic hydrocarbons (PAH). We previously showed that the PAH prototype, benzo[a]pyrene (B[a]P), triggers apoptosis via DNA damage-induced p53 activation (genotoxic pathway) and via remodeling of the membrane cholesterol-rich microdomains called lipid rafts, leading to changes in pH homeostasis (non-genotoxic pathway). As omega-3 (n-3) fatty acids can affect membrane composition and function or hamper in vivo PAH genotoxicity, we hypothesized that addition of physiologically relevant levels of polyunsaturated n-3 fatty acids (PUFAs) might interfere with B[a]P-induced toxicity. The effects of two major PUFAs, docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), were tested on B[a]P cytotoxicity in the liver epithelial cell line F258. Both PUFAs reduced B[a]P-induced apoptosis. Surprisingly, pre-treatment with DHA increased the formation of reactive B[a]P metabolites, resulting in higher levels of B[a]P-DNA adducts. EPA had no apparent effect on B[a]P metabolism or related DNA damage. EPA and DHA prevented B[a]P-induced apoptotic alkalinization by affecting Na(+)/H(+) exchanger 1 activity. Thus, the inhibitory effects of omega-3 fatty acids on B[a]P-induced apoptosis involve a non-genotoxic pathway associated with plasma membrane remodeling. Our results suggest that dietary omega-3 fatty acids may have marked effects on the biological consequences of PAH exposure.
ISSN: 0009-2797

hal-00950341
https://hal.archives-ouvertes.fr/hal-00950341
https://hal.archives-ouvertes.fr/hal-00950341/document
https://hal.archives-ouvertes.fr/hal-00950341/file/DENDELE_et_al_2013-unmarked.pdf
PUBMED : 24246761

Résumé : Chez la banane dessert, les saveurs sucrée et acide, caractéristiques importantes pour les consommateurs, sont pilotées par les teneurs en acides citrique et malique. Ce travail a donc porté sur l’étude des processus physiologiques qui pilotent l’accumulation de ces acides dans la pulpe de banane (Musa sp. AA) en combinant analyse expérimentale et modélisation écophysiologique. Nous nous sommes notamment intéressés à l’effet du génotype et des conditions de croissance du fruit en adoptant une approche intégrative liant les phases pré et post récolte.Les effets de la charge en fruit, de la fertilisation potassique, et du stade de récolte sur l’accumulation du citrate et du malate dans la pulpe ont été étudiés expérimentalement. La variabilité génotypique a été prise en compte en choisissant trois génotypes présentant des acidités contrastées à maturité. Des différences d’évolution des teneurs en acides, dues à des modifications métaboliques, ont été observées entre les génotypes pendant les phases pré et post récolte. Le stade de récolte a eu un effet significatif sur les teneurs en acides des fruits pendant la maturation post récolte. La charge en fruit et la fertilisation potassique n’en ont eu aucun. Des modèles écophysiologiques ont été développés pour prédire différents critères d’acidité de la banane en pré et post récolte. Le pH et l’acidité titrable ont été prédits par un modèle d’équilibres acido-basiques, la teneur en malate par un modèle de stockage vacuolaire, et la teneur en citrate par un modèle du cycle de Krebs. Ces modèles ont permis d’identifier les processus physiologiques clés qui pilotent l’acidité de la banane. Des paramètres génotypiques ont été identifiés liés à l’activité de l’enzyme malique mitochondriale et à celle des transporteurs mitochondriaux du malate pour le modèle citrate, et à l’activité des pompes à protons vacuolaire ATPases pour le modèle malate. Ces modèles ont également permis de disséquer l’effet des conditions de croissance du fruit sur l’acidité de la banane. L’intégration des modèles développés dans un modèle d’élaboration de l’acidité et son utilisation potentielle pour l’amélioration variétale sont discutées.
Citric and malic acids determine the sourness and sweetness of banana pulp, which are the two main determinants of consumer preferences. The present work focused on the physiological processes controlling the accumulation of citric and malic acids in banana pulp (Musa sp. AA) using experimental analysis and ecophysiological modeling. We chose an integrative approach linking the pre and post-harvest stages, and focused on the effect of genotype and fruit growing conditions. Experiments were conducted to study the effect of fruit load, potassium fertilization and fruit age at harvest on the accumulation of citrate and malate in banana pulp. To account for genotypic variability, three genotypes with contrasting acidity at the eating stage were studied. Major differences in the pattern of citrate and malate accumulation were found in the three cultivars both during growth and post-harvest ripening and were shown to be the result of metabolic changes. The harvest stage had a significant effect on the concentrations of acids during post-harvest ripening. Fruit load and potassium fertilization had no effect.Ecophysiological models were developed to predict several banana acidity criteria during the pre and post harvest stages. pH and titratable acidity were predicted by a model of acid-base reactions; malate content by a model of vacuolar storage; and citrate content by a model of the TCA cycle. These models led to the identification of the key physiological processes that control banana acidity. Genotypic parameters were identified, which were related to the activity of the mitochondrial malic enzyme and of the malate mitochondrial carriers in the citrate model, as well as to the activity of the vacuolar proton pump, ATPase, in the malate model. The two models were also used to analyze the effects of fruit growth conditions on banana acidity.Combining the three models in a global model of banana acidity, and the possible use of this model for varietal improvement are discussed.

http://www.theses.fr/2014AGUY0777/document

Éditeur(s) : Gauthier-Villars
Résumé : Preparative pyrolysis followed by liquid chromatographic separation and gas chromatography of hydrocarbons (Pyrolysis-LC-GC) were used to study the participation of terrestrial and/or aquatic compounds in the formation of humic substances in sediments. Analyses performed on humic substances from recent sediments sampled in the Elorn river estuary (France) show that these substances are similar in many respects to other lacustrine or marine humic substances, with regard, for instance, to their high nitrogen and sulphur content and their low aromaticity. Mass balances on pyrolysis products and group composition of the C-14+ fraction of the pyrolysates were performed. The distribution of the total alkane and alkene fraction, isocyclo alkanes and alkenes from these humic acid pyrolysates was compared to that of various reference humic acid pyrolysates. The biomarker study (distribution and hopanes/steranes ratios from humic acid pyrolysates) confirms the participation throughout the estuary of algal precursors in the formation of the studied compounds, irrespective of the location of the sampling zone (upstream, median or downstream part of the estuary).
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 1 , P. 43-53

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21029/18655.pdf
http://archimer.ifremer.fr/doc/00099/21029/

Éditeur(s) : HAL CCSD National Institute of Environmental Health Sciences
Résumé : International audience
BACKGROUND: Glycol ethers are present in a wide range of occupational and domestic products. Animal studies have suggested that some of them may affect ovarian function. OBJECTIVE: To study the relation between women's exposure to glycol ethers and time to pregnancy. METHODS: Urine from randomly selected women in the PELAGIE mother-child cohort who had samples collected before 19 weeks of gestation was tested to measure eight glycol ether metabolites by chromatography coupled to mass spectrometry. Time to pregnancy was collected at the beginning of the pregnancy by asking women how many months they took to conceive. Associations between metabolite levels and time to pregnancy were estimated in 519 women with complete data using discrete-time Cox proportional hazards models to adjust for potential confounders. RESULTS: Glycol ether metabolites were detected in 6% (for ethoxyacetic acid) to 93% (for phenoxyacetic and butoxyacetic acids) of urine samples. Phenoxyacetic acid was the only metabolite with a statistically significant association with longer time to pregnancy (fecundability OR 0.82; 95% CI: 0.63, 1.06 for the second and third quartile combined; fecundability OR 0.70; 95% CI: 0.52, 0.95 for a fourth-quartile (≥1.38 mg/L) vs. first-quartile concentration (<0.14 mg/L)). This association remained stable after multiple sensitivity analyses. CONCLUSION: Phenoxyacetic acid, which was present in most of the urine samples tested in our study, was associated with increased time to pregnancy. This metabolite and its main parent compound, 2-phenoxyethanol, are plausible causes of decreased fecundability, but may also be surrogates for potential co-exposures frequently present in cosmetics.
ISSN: 0091-6765

hal-00866023
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00866023
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00866023/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00866023/file/Urinary_Glycol_Ether-accepted.pdf
DOI : 10.1289/ehp.1206103

Éditeur(s) : Springer
Résumé : Batch culture experiments using viral enrichment were conducted to test the response of a coastal bacterial community to autochthonous (i.e., co-existing) or allochthonous riverine viruses. The effects of viral infections on bacterial dynamics and activity were assessed by epifluorescence microscopy and thymidine incorporation, respectively, whereas the effect of viral infection on bacterial community composition was examined by polymerase chain reaction-single strand conformation polymorphism 16S ribosomal RNA fingerprinting. The percentages of high nucleic acid-containing cells, evaluated by flow cytometry, were significantly correlated (r (2) = 0.91, n = 12, p < 0.0001) to bacterial production, making this value a good predictor of active cell dynamics along the study. While confinement and temperature were the two principal experimental factors affecting bacterial community composition and dynamics, respectively, additions of freshwater viruses had significant effects on coastal bacterial communities. Thus, foreign viruses significantly reduced net bacterial population increase as compared to the enrichment treated with inactivated virus. Moreover, freshwater viruses recurrently and specifically affected bacterial community composition, as compared to addition of autochthonous viruses. In most cases, the combined treatment viruses and freshwater dissolved organic matter helped to maintain or even enhance species richness in coastal bacterial communities in agreement to the 'killing the winner' hypothesis. Thus, riverine virus input could potentially influence bacterial community composition of the coastal bay albeit with modest modification of bulk bacterial growth.
Microbial Ecology (0095-3628) (Springer), 2009-02 , Vol. 57 , N. 2 , P. 295-306

Droits : 2009 Springer
http://archimer.ifremer.fr/doc/2009/publication-6636.pdf
DOI:10.1007/s00248-008-9428-1
http://archimer.ifremer.fr/doc/00000/6636/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Liver X Receptors (LXRs) α and β and the Peroxisome Proliferator-Activated Receptor α (PPARα) are transcription factors that belong to class II nuclear receptors. They drive the expression of genes involved in hepatic lipid homeostasis and therefore are important targets for the prevention and treatment of nonalcoholic fatty liver disease (NAFLD). LXRs and PPARα are regulated by endogenous ligands, oxysterols and fatty acid derived molecules, respectively. In the liver, pharmacological activation of LXRs leads to the over-expression of genes involved in de novo lipogenesis, while PPARα is critical for fatty acid catabolism in nutrient deprivation. Even if these two nuclear receptors seemed to play opposite parts, recent studies have highlighted that PPARα also influence the expression of genes involved in fatty acids synthesis. In this study, we used pharmacological approaches and genetically engineered mice to investigate the cross-talk between LXRs and PPARα in the regulation of genes responsible for lipogenesis. We first investigated the effect of T0901317 and fenofibrate, two synthetic agonists of LXRs and PPARα, respectively. As expected, T0901317 and fenofibrate induce expression of genes involved LXR-dependent and PPARα-dependent lipogenic responses. Considering such overlapping effect, we then tested whether LXR agonist may influence PPARα driven response and vice versa. We show that the lack of PPARα does not influence the effects of T0901317 on lipogenic genes expression. However, PPARα deficiency prevents the up-regulation of genes involved in ω-hydroxylation that are induced by the LXR agonist. In addition, over-expression of lipogenic genes in response to fenofibrate is decreased in LXR knockout mice as well as the expression of PPARα target genes involved in fatty acid oxidation. Altogether, our work provides in vivo evidence for a central interconnection between nuclear receptors that drive hepatic lipid metabolism in response to oxysterol and fatty acids.
ISSN: 0300-9084

inserm-00872582
http://www.hal.inserm.fr/inserm-00872582
DOI : 10.1016/j.biochi.2012.09.028
PUBMED : 23063693

Éditeur(s) : HAL CCSD
Résumé : International audience
We have previously shown that primary rat hepatocyte treatment by n-3 polyunsaturated fatty acids (omega 3) gave opposite results concerning early ethanol cytotoxicity (only a 5-hours-intoxication period) depending on the tested omega 3 type. The aim of this study was to follow on experiments in other in vitro and in vivo models that allowed longer intoxication times with ethanol. When highly differentiated hepatocytes from WIF-B9 line were treated with ethanol for 4 days, docosahexaenoic acid (DHA) protected from ethanol-induced cell death and oxidative stress, whereas eicosapentaenoic acid (EPA) increased ethanol toxic effects. In vivo, Zebrafish larvae exhibited a similar behavior after 7 days of ethanol intoxication depending on the omega 3 introduced in the bath. Altogether, these data confirm differential effects for omega 3s even for longer exposure times with ethanol.
Cahiers de l'Ireb

hal-01117633
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01117633

Éditeur(s) : HAL CCSD
Résumé : Background and objectives.[br/] Dairy propionibacteria are isolated from various ecological niches, including soil, grass, silage, rumen, raw milk and dairy plants, showing great adaptability and robustness. Used as ripening starters in Swiss type cheeses, these food grade bacteria are described as nutraceutical producers and they release into the external medium short chain fatty acids (SCFA), folic acid, cobalamin and the bifidogenic 1,4- dihydroxy-2-naphthoic acid (DHNA). These compounds are known to play a pivotal role in the modulation of intestinal physiology through diet. Considering the pro-apoptotic potential of some of these metabolites, we investigated the potential of dairy products fermented by the main species, Propionibacterium freudenreichii, to prevent colon carcinogenesis. Methods.[br/] We developed a new fermented milk. Taking advantage of milk fractions, high and stable populations of P. freudenreichii were obtained in this product. It was tested in vitro on gastric HGT-1 and colic HT-29 cells with respect to the typical hallmarks of apoptosis. In vivo, the fermented milk was evaluated in piglets with respect to general health parameters and in human microbiota-associated rats, treated or not with dimethylhydrazine (DMH), with respect to intestinal proliferation and apoptosis. Results. Fermented milk induced cell death in both gastric and colon cancer cells. Cellular and molecular characterization of cells dying in response to SCFA treatment revealed cell cycle arrest, drop in intracellular ATP, depolarization of mitochondria, translocation of key apoptosis proteins, processing of caspases and fragmentation of the nucleus. Interestingly, the new fermented milk was shown to potentiate the cytotoxic effect of molecules used in cancer chemotherapy. In accordance, it modulated expression of key apoptotic proteins. In vivo, the fermented milk was evaluated in piglets. Daily oral gavage led to high colic P. freudenreichii populations, to modulation of the intestinal microbiota and modulation of intestinal cytokines. Promotion of piglets’ growth also revealed general probiotic effects of fermented milk. Considering that propionibacteria were metabolically active in the intestine, we further investigated their impact on colon carcinogenesis (induced by dimethylhydrazine, DMH) in human microbiota-associated rats. Consumption of selected strains of propionibacteria resulted in enhanced apoptotic depletion of DMH damaged epithelial cells, yet had no effect on neither proliferation nor apoptosis in healthy rats. Conclusions and perspectives.[br/] These results open new perspectives in the field of colon cancer cells prevention and/or treatment. The synergy with pro-apoptotic chemotherapy molecules suggests that such a fermented product may be proposed as a food supplement to enhance the effects of anticancer treatments.
colloque international « Nutrition and Cancer : Hot topics from biology to public health issues »
Paris, France

hal-01190452
https://hal.archives-ouvertes.fr/hal-01190452
PRODINRA : 201853

Éditeur(s) : HAL CCSD Maney Publishing
Résumé : International audience
The strict environmental legislations and increasing ecological awareness among scientists have led to the development of “green” alternatives to mitigate corrosion. In the present work, literature on green corrosion inhibitors has been reviewed, and the salient features of our work on green corrosion inhibitors have been highlighted. Among the studied leaves, extract Andrographis paniculata showed better inhibition performance (98%) than the other leaves extract. Strychnos nuxvomica showed better inhibition (98%) than the other seed extracts. Moringa oleifera is reflected as a good corrosion inhibitor of mild steel in 1 M HCl with 98% inhibition efficiency among the studied fruits extract. Bacopa monnieri showed its maximum inhibition performance to be 95% at 600 ppm among the investigated stem extracts. All the reported plant extracts were found to inhibit the corrosion of mild steel in acid media.
ISSN: 1478-422X

hal-01097106
https://hal-agroparistech.archives-ouvertes.fr/hal-01097106
DOI : 10.1016/j.corsci.2010.10.006

Éditeur(s) : Elsevier Science Bv
Résumé : In this study, three microdiets were tested on weaning of Florida pompano larvae: Otohime, Gemma and a reference diet LR803. The experimental system was stocked with 11-day-old larvae, which were co-fed micro-diets and live food from 11 dph to 17 dph then micro-diets only until 28 dph. Survival from 11 dph to 28 dph was similar for all treatments, with an average of 33%. At the end of the trial, the Gemma larvae were significantly longer and heavier than larvae fed the other diets. Significant differences were observed in fatty acid composition of the diets and larvae between treatments. The Gemma larvae incorporated the lowest amount of eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA) and arachidonic acid (ARA). However, they had the highest DHA/EPA and ARA/EPA ratios, which is in agreement with the concept that the proportions of polyunsaturated fatty acids could be of greater importance than their absolute amount. Results from the enzyme analysis suggest that fishmeal is suitable as the main protein source for Florida pompano larvae compared to krill meal. This study gives new insights on Florida pompano early nutritional requirements and demonstrated the full functionality of the pancreas at 16 days post hatch, opening possibilities of an earlier weaning time.
Aquaculture (0044-8486) (Elsevier Science Bv), 2014-02 , Vol. 422 , P. 268-276

Droits : 2013 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00169/28067/26282.pdf
DOI:10.1016/j.aquaculture.2013.12.006
http://archimer.ifremer.fr/doc/00169/28067/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Adult fish exhibit a strong neurogenic capacity due to the persistence of radial glial progenitor cells. In zebrafish, radial glial cells display well-established markers such as the estrogen-synthesizing enzyme (AroB) and the brain lipid binding protein (Blbp), which is known to strongly bind omega-3 polyunsaturated fatty acids such as docosahexaenoic acid (DHA). While Blpb is mainly described in the telencephalon of adult zebrafish, its expression in the remaining regions of the brain is poorly documented. The present study was designed to further investigate Blbp expression in the brain, its co-expression with AroB, and its link with radial glial cells proliferation in zebrafish. We generated a complete and detailed mapping of Blbp expression in the whole brain and show its complete co-expression with AroB, except in some tectal and hypothalamic regions. By performing PCNA and Blbp immunohistochemistry on cyp19a1b-GFP (AroB-GFP) fish, we also demonstrated preferential Blbp expression in proliferative radial glial cells in almost all regions studied. To our knowledge, this is the first complete and detailed mapping of Blbp-expressing cells showing strong association between Blbp and radial glial cell proliferation in the adult brain of fish. Given that zebrafish is now recognized models for studying neurogenesis and brain repair, our data provide detailed characterization of Blbp in the entire brain and open up a broad field of research investigating the role of omega-3 polyunsaturated fatty acids in neural stem cell activity in fish
ISSN: 1567-133X

hal-01237088
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237088
DOI : 10.1016/j.gep.2015.11.003
PUBMED : 26611722

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Dentin matrix acidic phosphoprotein 1 (DMP1) is an acidic, highly phosphorylated, noncollagenous protein secreted during dentin and bone formation. Previous functional studies of DMP1 have revealed various motifs playing a role in either mineralization or cell differentiation. We performed an evolutionary analysis of DMP1 to identify residues and motifs that were conserved during 220 millions years (Ma) of mammalian evolution, and hence have an important function. In silico search provided us with 41 sequences that were aligned and analyzed using the Hyphy program. We showed that DMP1 contains 55 positions that were kept unchanged for 220 Ma. We also defined in a more precise manner some motifs that were already known (i.e., cleavage sites, RGD motif, ASARM peptide, glycosaminoglycan chain attachment site, nuclear localization signal sites, and dentin sialophosphoprotein-binding site), and we found five, highly conserved, new functional motifs. In the near future, functional studies could be performed to understand the role played by them.
ISSN: 0022-2844

hal-01545482
https://hal.archives-ouvertes.fr/hal-01545482
DOI : 10.1007/s00239-013-9539-2

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A novel antimicrobial peptide, named Bicarinalin, has been isolated from the venom of the ant Tetramorium bicarinatum. Its amino acid sequence has been determined by de novo sequencing using mass spectrometry and by Edman degradation. Bicarinalin contained 20 amino acid residues and was C-terminally amidated as the majority of antimicrobial peptides isolated to date from insect venoms. Interestingly, this peptide had a linear structure and exhibited no meaningful similarity with any known peptides. Antibacterial activities against Staphylococcus aureus and S. xylosus strains were evaluated using a synthetic replicate. Bicarinalin had a potent and broad antibacterial activity of the same magnitude as Melittin and other hymenopteran antimicrobial peptides such as Pilosulin or Defensin. Moreover, this antimicrobial peptide has a weak hemolytic activity compared to Melittin on erythrocytes, suggesting potential for development into an anti-infective agent for use against emerging antibiotic-resistant pathogens.
ISSN: 0196-9781

hal-00996401
https://hal.archives-ouvertes.fr/hal-00996401
DOI : 10.1016/j.peptides.2012.08.018
PUBMED : 22960382

Éditeur(s) : Adac-cryptogamie
Résumé : Very few attempts have been made in order to investigate the role of nutrients on cellular growth and toxin production in dinoflagellates associated with DSP (Diarrhetic Shellfish Poison). Some preliminary results are presented here, aiming at a better knowledge of inorganic nitrogen and organic phosphorus effects upon division rate and toxin content of Prorocentrum lima (PL2V spanish strain). Nitrogen have a positive effect on growth rate, up to a threshold value of 880muM.l-1. Above this threshold the rate decreases. There is no effect on toxin content since okadaic acid and DTX1 cell contents remain low (4.8 +/- 0.5 pg.cell.-1) and steady. Phosphorus effect upon division rate follows a non-linear relationship, whereas cellular toxic content is inversely proportional to growth rate.
Peu d'études ont été réalisées sur l'influence des nutriments sur la croissance et la toxicité de dinoflagellés producteurs de poisons diarrhéiques (Diarrhetic Shellfish Poison = DSP). Des résultats préliminaires sont présentés ici en ce qui concerne l'effef de concentrations croissantes d'azote inorganique et de phosphore organique sur le taux de division et la production toxinique de Prorocentrum lima (souche espagnole PL2V). L'azote a une influence positive sur la croissance de cette microalgue jusqu'à une valeur seuil de 880 μM.l#-1. Au-delà de ce seuil, le taux de division diminue. Par contre, l'effet sur la toxicité n'est pas significatif, les concentrations en acide okadaïque et DTXI restant relativement faibles (4.8 ± 0.5 pg.cell.· l ) et stables. Le phosphore agit intégralement sur le taux de division et il y a une relation inverse entre ce dernier et le contenu toxinique cellulaire.
Cryptogamie Algologie (0181-1568) (Adac-cryptogamie), 1992-08 , Vol. 13 , N. 3 , P. 187-195

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00133/24469/22483.pdf
http://archimer.ifremer.fr/doc/00133/24469/

Éditeur(s) : Elsevier Sci Ltd
Résumé : We have studied the exopolysaccharide produced by Cobetia marina DSMZ 4741, a marine bacterium isolated from coastal seawater. This strain is able to produce a polysaccharide in presence of carbon sources as glucose, mannitol and alginate. The maximum production occurs in aerobic condition, during the end of the exponential phase. The polymer is a non-viscous, acidic heteropolysaccharide of 270 kDa constituted of a repeating unit of: →2)-β-D-Ribf-(1→4)-[7,8-O-(Pyr)]-α-D-KDOp-(2→ This kind of chemical structure is generally related to K-antigen polysaccharide of pathogenic Escherichia coli strains. This is the first time this type of EPS is described from a marine bacterium. Moreover the polysaccharide exhibits a pyruvate substitution on its 3-deoxy-D-manno-oct-2-ulosonic acid (KDO) residue never encountered before. The discovery of such an unexpected EPS with high biotechnological potential is a new incentive for a better exploration of bioactive marine resources.
Carbohydrate Polymers (0144-8617) (Elsevier Sci Ltd), 2015-06 , Vol. 124 , P. 347-356

Droits : 2015 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00254/36494/35038.pdf
DOI:10.1016/j.carbpol.2015.02.038
http://archimer.ifremer.fr/doc/00254/36494/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Understanding the genetic mechanisms of speciation and basis of species differences is among the most important challenges in evolutionary biology. Two questions of particular interest are what roles divergent selection and chromosomal differentiation play in these processes. A number of recently proposed theories argue that chromosomal rearrangements can facilitate the development and maintenance of reproductive isolation and species differences by suppressing recombination within rearranged regions. Reduced recombination permits the accumulation of alleles contributing to isolation and adaptive differentiation and protects existing differences from the homogenizing effects of introgression between incipient species. Here, we examine patterns of genetic diversity and divergence in rearranged versus collinear regions in two widespread, extensively hybridizing sunflower species, Helianthus annuus and Helianthus petiolaris, using sequence data from 77 loci distributed throughout the genomes of the two species. We find weak evidence for increased genetic divergence near chromosomal break points but not within rearranged regions overall. We find no evidence for increased rates of adaptive divergence on rearranged chromosomes; in fact, collinear chromosomes show a far greater excess of fixed amino acid differences between the two species. A comparison with a third sunflower species indicates that much of the nonsynonymous divergence between H. annuus and H. petiolaris probably occurred during or soon after their formation. Our results suggest a limited role for chromosomal rearrangements in genetic divergence, but they do document substantial adaptive divergence and provide further evidence of how species integrity and genetic identity can be maintained at many loci in the face of extensive hybridization and gene flow.
ISSN: 0737-4038

hal-01032153
https://hal.archives-ouvertes.fr/hal-01032153
DOI : 10.1093/molbev/msp043

Éditeur(s) : Elsevier
Résumé : A new method for the non-specific determination of iron-porphyrin-like complexes in natural waters has been developed. It is based on the chemiluminescent oxidation of the luminol in the presence of dioxygen (O-2) at pH 13. The method has been implemented in a FIA manifold that allowed the direct injection of seawater. The limit of detection is 0.11 nM of equivalent hemin (Fe-protoporphyrin IX). Fe2+, Fe3+, H2O2, siderophore (deferoxamin mesylate), humic acid and phytic acid did not interfere when the), were present at the concentrations expected in seawater. Metal free porphyrin and Mg, Cu, Co porphyrin complexes did not induce a significant chemiluminescent signal. Poisoned unfiltered samples could be stored for several weeks before analyses. The new method was successfully applied to the determination of the Fe-porphyrin complexes contained in cultured phytoplankton and in natural samples.
Analytica Chimica Acta (0003-2670) (Elsevier), 2007-04 , Vol. 588 , N. 2 , P. 237-244

Droits : 2007 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2007/publication-3298.pdf
DOI:10.1016/j.aca.2007.02.007
http://archimer.ifremer.fr/doc/00000/3298/