Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The Anopheles midgut hosts diverse bacterial communities and represents a complex ecosystem. Several evidences indicate that mosquito midgut microbiota interferes with malaria parasite transmission. However, the bacterial composition of salivary glands and ovaries, two other biologically important tissues, has not been described so far. In this study, we investigated the dynamics of the bacterial communities in the mosquito tissues from emerging mosquitoes until 8 days after a blood meal containing Plasmodium falciparum gametocytes and described the temporal colonization of the mosquito epithelia. Bacterial communities were identified in the midgut, ovaries, and salivary glands of individual mosquitoes using pyrosequencing of the 16S rRNA gene. We found that the mosquito epithelia share a core microbiota, but some bacteria taxa were more associated with one or another tissue at a particular time point. The bacterial composition in the tissues of emerging mosquitoes varied according to the breeding site, indicating that some bacteria are acquired from the environment. Our results revealed temporal variations in the bacterial community structure, possibly as a result of the mosquito physiological changes. The abundance of Serratia significantly correlated with P. falciparum infection both in the midgut and salivary glands of malaria challenged mosquitoes, which suggests that interactions occur between microbes and parasites. These bacteria may represent promising targets for vector control strategies. Overall, this study points out the importance of characterizing bacterial communities in malaria mosquito vectors.
ISSN: 1664-302X

hal-01546162
https://hal.archives-ouvertes.fr/hal-01546162
DOI : 10.3389/fmicb.2015.01500

Éditeur(s) : HAL CCSD
Résumé : The effects of climate change on extreme events are difficult to assess because extremes present large variability and consequently, it is difficult to identify significant trends in relation to the lack of instrumental long time series. Here we present a record of these extreme storm events in the French Mediterrannean coast over the past 7000 years based on a long sediment core from lagoonal environment in Gulf of Lions. Using a high resolution multiproxies approach on core associating grain size, faunal to reconstruct Mid to Late Holocene history of backbarrier deposits in relation to landfalling activity. Even if change in lagoon geomorphological setting over the Holocene does not allow to compare storm events in terms of intensity trough time, we have recorded six periods of increase in storm activity at 6200, 5500, 4400, 3200, 1500 yr cal B.P. and over the LIA (450 and 100 yr cal B.P.). These evidences of changes in coastal hydrodynamic, inversely correlated to periods of aridification in Western Mediterranean region, are in phase with those observed over the North Atlantic and correspond to Holocene cooling events. This increase in storm activity during Holocene cold events over Mediterranean region was probably due to thermal gradient increase leading to enhanced lower tropospheric baroclinicity over a large Central Atlantic-European domain. This study demonstrates that temperatures in North Atlantic region influence the severe storm activity and therefore the Mediterranean climate at Holocene timescale.
Les effets du changement climatique sur les événements extrêmes sont difficiles à estimer car ces phénomènes présentent une large variabilité, et par conséquent il est délicat d'identifier des tendances significatives compte tenu de l'absence de longues séries de données instrumentales. Dans cette étude, nous présentons un enregistrement de ces tempêtes extrêmes sur la côte Méditerranéenne française au cours des 7000 dernières années à partir de carottes sédimentaires prélevées dans un système lagunaire du Golfe du Lion. L'utilisation d'une approche multi-traceur à haute résolution avec des analyses granulométriques, faunistiques, géochimiques (XRF), en minéraux argileux associées à des données chronologiques de radiocarbone et de 210Pb, 137Cs ; nous a permis de reconstruire l'histoire, au cours de l'Holocène, des dépôts lagunaires en relation avec l'activité des tempêtes. Bien que les paramètres morphologiques de cet environnement lagunaire aient changé durant l'Holocène, ne permettant pas de comparer ces événements au cours du temps en terme d'intensité, nous enregistrons six périodes d'augmentation de l'activité des tempêtes datées à 6200, 5500, 4400, 3200, 1500 an cal B.P. et durant le Petit Age Glaciaire (de 450 à 100 an cal B.P.). Ces changements de l'activité hydrodynamique côtière, en antiphase avec les périodes d'aridifications en Méditerranée de l'Ouest, sont corrélées avec celles observées dans le bassin Nord Atlantique et correspondent aux événements de refroidissement Holocène. L'augmentation de l'activité des tempêtes dans la cette région de la Méditerranée durant les périodes froides, associée à une diminution des températures au pôle Nord, est probablement liée à l'augmentation du gradient thermique qui, par interaction barocline, favorise les cycles d'évolution des tempêtes dans toute l'Europe et la Méditerranée de l'Ouest. Cette étude démontre ainsi que la température dans la région Nord Atlantique influence l'activité des tempêtes extrêmes et donc du climat Méditerranéen à l'échelle de l'Holocène.
https://tel.archives-ouvertes.fr/tel-00437757

tel-00437757
https://tel.archives-ouvertes.fr/tel-00437757
https://tel.archives-ouvertes.fr/tel-00437757/document
https://tel.archives-ouvertes.fr/tel-00437757/file/Sabatier_these.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Ecological signs of Earth's biosphere forewarn an alarming trajectory towards a global mass-extinction. Assessing species performance and susceptibilities to decline is essential to comprehend and reverse this trend. Yet it is challenging, given difficulties associated with quantifying individual and population processes that are variable across time, space, and life-stages. We describe a new approach to estimating and comparing species performances that combines empirical data, a novel theoretical consideration of population dynamics, and modern statistics. Our approach allows for a more realistic continuous representation of individual performances along development stages while taking into account non-linearity, and natural variability as captured by spatio-temporally replicated observations. We illustrate its application in a coral meta-assemblage composed of populations of the three major reef-building taxa Acropora, Pocillopora, Porites. Using a unique set of highly replicated observations of individual coral dynamics under various environmental conditions, we show how taxa differ in their investment in recruitment and size-specific aptitude for growth and survival, notably through different use of clonal shrinkage, fragmentation, fission, and fusion processes. Our results reveal contrasting life-history trade-offs among taxa which, along with differing patterns of density-dependent recruitment, modulate species responses to decline. These differences in coral life history traits reflect opposing life-strategies, imply regulation at differing life-stages, and explain divergence in species trajectories. Our findings indicate a high potential for resilience in Pocillopora and Porites populations, thanks respectively to a sustained recruitment that promotes demographic elasticity through replacement of individuals, and a steady resistance to mortality which confers persistence through lingering of individuals. Resilience in Acropora appears more arbitrary, given high susceptibility to perturbations and dependency of recruitment on presence of established local populations. We identify management actions that can complement Acropora's life history and benefit recovery of its populations following mortality events. Our regression-modelling approach to quantifying and comparing species performances in different population processes is applicable to all taxa, as illustrated even those with complex clonal life histories, and can be implemented at wide spatio-temporal and taxonomic coverage. It can promote more accurate representation of species dynamics in both descriptive and predictive modelling approaches. The semi-parametric contrast curve method we develop facilitates comparing response variables along continuous explicative metrics while accounting for multiple sources of complexity in empirical data. It should widely benefit investigations in ecology and quantitative science.
ISSN: 1476-945X

hal-01212337
https://hal-univ-perp.archives-ouvertes.fr/hal-01212337
DOI : 10.1016/j.ecocom.2015.07.003

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : This study focuses on the petrology, geochronology and thermochronology of metamorphic rocks within the northern Menderes Massif in western Turkey. Metasediments belonging to the cover series of the Massif record pervasive amphibolite-facies metamorphism culminating at ca. 625–670 °C and 7–9 kbars. U–Th–Pb in situ ages on monazite and allanite from these metapelites record crustal thickening and nappe stacking associated with the internal imbrication of the Anatolide–Taurides platform during the Eocene. In addition, new 39Ar/40Ar single muscovite grain analyses on deformed rocks were performed in three localities within the northern Menderes Massif and ages range from 19.8 to 25.5 Ma. These mylonites may be related to both well-known detachments, Simav to the north and Alaşehir to the south, which accommodate Oligo–Miocene exhumation of the Menderes core complex. U–Th–Pb data on monazite grains (22.2 ± 0.2 Ma) from migmatites emplaced within the Simav detachment confirm these ages.
ISSN: 1437-3254

hal-01355967
https://hal.archives-ouvertes.fr/hal-01355967
DOI : 10.1007/s00531-015-1271-2

Éditeur(s) : HAL CCSD
Résumé : This work focus on the characterization of the source and dynamic of compactional fluids during sedimentary burial, through two complementary examples of late orogenic oil‐field half‐grabens: The exhumed Lodève Permian Basin and a deep buried Jurassic basin in the North Viking Graben (North Sea).Constituting the main part of the thesis, a multi‐disciplinary approach was conducted in the Lodève Basin where Ba‐F‐Cu‐Pb polymetallic mineralized systems are trapped into synrift faults and paleokarsts in the carbonate basement at the hinge point of the rollover. The source, timing and P/T conditions of fluid migration were deduced from the analysis of the microfabric, the fluid inclusions microthermometry, and the isotopic (Sr, S, O, H) and Rare Earth Element (REE) signature. Results are then crossed with a structural and thermal modeling that consolidates the sequence and dynamics of fluid during burial.A similar approach was conducted in the North Viking Graben where fluid markers are restricted to 3D seismic and well core data. Comparable Ba‐Pb‐Zn veins are reported in basin margin, plugging one of the most important siliciclastic hydrocarbon reservoir in the substratum. This analysis provides additional constraints on basinal fluid behavior and allows us to propose a global dynamic model for various compositions of fluids and reservoirs.We conclude to a polyphase fluid sequence history including:(a) In the carbonate basement of the Lodève Basin, karstic paleocanyon incisions and associated cavities coupled to synrift fault, act as major drain for fluids. These structures are early affected by hypogen‐sulfuric karstification in response to the interaction between bacterial oxidation of sulfides entrapped within Lower Permian blackshales and the basement oxidizing aquifer.(b) Disequilibrium compaction initiates overpressure‐driven basinal fluid migration towards basin margins, characterized by temperatures around 150‐180°C and salinities between 9 et 18wt%eq.NaCl. Isotopic (Sr, S, O) and REE analyses reveal that Ba‐M+‐rich mineralizing fluids derived mainly from buried blackshales diagenesis. External fluids coming from the lower crust are also identified that play a key role in fluorite precipitation by the leaching of late hercynian granites (mean temperature of 250°C and salinity > 20wt%eq.NaCl).(c) During the synrift period, fluid overpressure is responsible for the periodic reactivation of fault plane according to seismic‐valve process, bedded‐control shearing and hydraulic brecciation at the basement‐seal interface. These mechanisms induce cyclic polymetallic mineralization by the mixing between in‐situ formation water and deep ascending basinal fluids.(d) Thermogenic fluids expulsion starts with last basinal fluids during late burial stage. Hydrocarbons thus migrate along the same regional pathways up to the rollover crest, where they are partly rerouted by the previous mineralized baffle.(e) In the Lodève basin, post‐rift exhumation of the margins led to the remobilization of synrift deposits by subaerial biochemical processes at the sulfate‐methane transition. The latter results from the interaction between the still active hydrocarbon dysmigration with a playa lake sulfate‐rich aquifer. Secondary low‐temperature barite fronts precipitate then within basement meteoric karsts.In addition to the « source to sink » model of basinal fluids, this work provides new insights on the early plugging of hydrocarbon reservoirs and for the metallogenesis of Mississippi Valley‐Type deposits.
Ce travail porte sur la caractérisation de la source et de la dynamique des fluides de bassin au cours de leur chargement à travers deux exemples complémentaires de demi‐grabens tardi‐orogéniques pétroliers : Le Bassin Permien de Lodève, aujourd’hui à l’affleurement et un bassin jurassique enfouis dans le North Viking Graben (Mer du Nord).Le coeur de la thèse concerne le Bassin de Lodève où, à partir d’une approche pluridisciplinaire intégrée, nous avons caractérisé l’architecture des minéralisations (Ba, F, Cu, Pb) piégées dans un réseau paléokarstique alimenté par les failles syn‐rift, dans le substratum carbonaté à l’apex du roll‐over. La source, le calendrier et les conditions de migration des fluides ont été approchés à partir de l’analyse de la micro‐fabrique, la microthermométrie sur inclusions fluides, les analyses isotopiques (Sr, S, O, H) et de Terres Rares. Les résultats analytiques ont été enfin croisés avec un modèle thermique et structural du bassin qui conforte la séquence et la dynamique du système fluide en cours d’enfouissement.Une démarche similaire, mais plus limitée, a été conduite dans le bassin du North Viking Graben où l’accès aux marqueurs fluides est restreint aux données de sismique 3D et de carottes. Comme à Lodève, les minéralisations Ba‐Pb‐Zn colmatent un réservoir dans le substratum à l’apex du roll‐over. Elles se présentent sous forme de ciments dans des grès ou des fractures. Cette analyse apporte des contraintes complémentaires et permet de proposer un modèle dynamique général avec des variantes en fonction de la nature des fluides et des réservoirs.On retiendra donc la séquence fluide suivante :(a) Dans le cas du bassin de Lodève sur substratum carbonaté, les chemins préférentiels de drainage se développent dans des paléocanyons N‐S couplés à un réseau de fractures et d’endokarsts météoriques. Ces derniers sont élargis en début de rifting par la dissolution hypogène sulfurique produite par l’oxydation bactérienne des sulfates et des pyrites des blackshales, au contact de l’aquifère oxydant du Cambrien.(b) Le déséquilibre de compaction initie la migration des fluides interstitiels en surpression vers les marges avec des températures autour de 150‐180°C et des salinités entre 9 et 18wt%eq.NaCl. Les analyses isotopiques (Sr, S, O) révèlent que la majorité des fluides provient de l’altération diagénétique des blackshales riches en métaux. Des interactions sont également mises en évidence avec des fluides profonds (entre 240°C et 260°C ; salinités > à 20wt%eq.NaCl), qui lessivent les granites tardi‐hercyniens.(c) Pendant le syn‐rift, les conditions de surpression de fluide permettent la réactivation cyclique des failles, les décollements stratigraphiques et la formation de brèches hydrauliques, favorisant la mise en connexion avec les réservoirs superficiels à l’apex du rollover. Le modèle de Sibson ajusté aux fluides de bassins est alors le moteur de la migration verticale.(d) Les fluides thermogéniques commencent à être expulsés avec les derniers fluides de compaction au cours d’un stade plus évolué de l’enfouissement en empruntant les mêmes chemins jusqu’à l’apex du roll over. Ils sont alors partiellement freinés et déviés par les colmatages minéralisés antérieurs.(e) A Lodève, la continentalisation des minéralisations antérieures au cours de l’exhumation post‐rift conduit à leur remaniement partiel au niveau de la transition sulfate‐méthane induite par l’interaction entre une playa évaporitique et la dysmigration des hydrocarbures. Des barytines secondaires de basse température, déprimées en Sr sont alors précipitées de manière synsédimentaire dans des karsts météoriques du socle.Outre l’illustration d’un modèle complet (source to sink) de dynamique des fluides dans un bassin, ce travail apporte de nouvelles contraintes dans l’approche du colmatage des réservoirs à hydrocarbures sur les têtes de blocs basculés et sur la genèse des gîtes miniers de type Mississippi Valley‐Type.
https://hal.archives-ouvertes.fr/tel-01457583

tel-01457583
https://hal.archives-ouvertes.fr/tel-01457583
https://hal.archives-ouvertes.fr/tel-01457583/document
https://hal.archives-ouvertes.fr/tel-01457583/file/th%C3%A8seLaurent2015V2.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The life-history traits and population dynamics of species are increasingly being attributed to the characteristics of their preferred habitats. While coral reef fish are often strongly associated with particular habitats, long-term studies establishing the demographic and life-history consequences of occupying different reef substrata are rare and no studies have monitored individuals in situ over their lifetime and determined the fate of their offspring. Here, we documented a quasi-turnover and local reproductive success for an entire population of orange clownfish (Amphiprion percula) from Kimbe Island, Papua New Guinea, by taking bi-annual samples of DNA over a 10-yr period (2003–2013). We compared demographic and life-history traits of individuals living on two host anemone species, Heteractis magnifica and Stichodactyla gigantea, including female size, adult continued presence (a proxy for relative longevity range), early post-settlement growth, the number of eggs per clutch and ‘local’ reproductive success (defined for each adult as the number of offspring returning to the natal population). Our results indicate that while the relative longevity of adults was similar on both host anemone species, females living in H. magnifica were larger than females in S. gigantea. However, despite females growing larger and producing more eggs on H. magnifica, we found that local reproductive success was significantly higher for clownfish living in S. gigantea. Life-history traits also exhibited local spatial variation, with higher local reproductive success recorded for adults living on S. gigantea on the eastern side of the island. Our findings support a ‘silver-spoon’ hypothesis that predicts individuals that are fortunate enough to recruit into good habitat and location will be rewarded with higher long-term reproductive success and will make a disproportionate contribution to population renewal.
ISSN: 0722-4028

hal-01357939
https://hal-univ-perp.archives-ouvertes.fr/hal-01357939
DOI : 10.1007/s00338-016-1485-1

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The symbiotic interaction between cnidarians, such as corals and sea anemones, and the unicellular algae Symbiodinium is regulated by yet poorly understood cellular mechanisms, despite the ecological importance of coral reefs. These mechanisms, including host-symbiont recognition and metabolic exchange, control symbiosis stability under normal conditions, but also lead to symbiosis breakdown (bleaching) during stress. This study describes the repertoire of the sterol-trafficking proteins Niemann-Pick type C (NPC1 and NPC2) in the symbiotic sea anemone Anemonia viridis. We found one NPC1 gene in contrast to the two genes (NPC1 and NPC1L1) present in vertebrate genomes. While only one NPC2 gene is present in many metazoans, this gene has been duplicated in cnidarians, and we detected four NPC2 genes in A. viridis. However, only one gene (AvNPC2-d) was upregulated in symbiotic relative to aposymbiotic sea anemones and displayed higher expression in the gastrodermis (symbiont-containing tissue) than in the epidermis. We performed immunolabelling experiments on tentacle cross sections and demonstrated that the AvNPC2-d protein was closely associated with symbiosomes. In addition, AvNPC1 and AvNPC2-d gene expression was strongly downregulated during stress. These data suggest that AvNPC2-d is involved in both the stability and dysfunction of cnidarian-dinoflagellate symbioses.
ISSN: 0962-1083

hal-01546166
https://hal.archives-ouvertes.fr/hal-01546166
DOI : 10.1111/mec.12876

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Cnidarian–dinoflagellate photosynthetic symbioses are fundamental to biologically diverse and productive coral reef ecosystems. The hallmark of this symbiotic relationship is the ability of dinoflagellate symbionts to supply their cnidarian host with a wide range of nutrients. Many aspects of this association nevertheless remain poorly characterized, including the exact identity of the transferred metabolic compounds, the mechanisms that control their exchange across the host–symbiont interface, and the precise subcellular fate of the translocated materials in cnidarian tissues. This lack of knowledge is mainly attributed to difficulties in investigating such metabolic interactions both in situ, i.e. on intact symbiotic associations, and at high spatial resolution. To address these issues, we illustrate the application of two in situ and high spatial resolution molecular and ion imaging techniques–matrix-assisted laser desorption ionization mass spectrometry imaging (MALDI-MSI) and the nano-scale secondary-ion mass spectrometry (NanoSIMS) ion microprobe. These imaging techniques provide important new opportunities for the detailed investigation of many aspects of cnidarian–dinoflagellate associations, including the dynamics of cellular interactions.
ISSN: 0944-2006

hal-01546914
http://hal.upmc.fr/hal-01546914
DOI : 10.1016/j.zool.2014.06.006

Éditeur(s) : Institut de Ciències del Mar de Barcelona, CSIC
Résumé : Acoustic and core data have recently been collected on the shelf break and the upper part of the slope of the south Aquitaine continental margin. They reveal the major role played by mass-flow gravity processes in deposit erosion and redistribution, modelling of the sea-bed, and transfer of sediment toward the deep-sea. The study region is bounded in the south by the Capbreton canyon. The northern area, which shows a smooth morphology, is characterised by small-scale deformations due to sediment creep or low-amplitude slide processes. The deformations are associated with mini listric-like faults that bound packets of sediments in which the deposit geometry is typical of constructional sediment waves. These sediment waves result from the interaction of depositional and gravity deformation processes. In the southern area, closer to the canyon, wave-like structures are still present but mostly of smaller size. They only result from gravity deformation processes without any evidence of constructional processes. In the vicinity of the Capbreton canyon, the shelf break and upper slope have a much more uneven morphology with sedimentary reliefs, escarpments and depressions directed toward the canyon thalweg. The depressions look like slide scars, and could be the result of regressive slides initiated at the top of the canyon flank. The age of the sliding event responsible for the formation of the depression observed today could be middle to upper Quaternary. Since their formation, these depressions act as conduits that channel the transfer of shelf sediment into the canyon, as demonstrated by the occurrence of a meandering channel on the sea-floor of one depression.
Scientia Marina (0214-8358) (Institut de Ciències del Mar de Barcelona, CSIC), 2006-06 , Vol. 70 , N. 1 , P. 89-100

Droits : 2006 Institut de Ciències del Mar de Barcelona
http://archimer.ifremer.fr/doc/2006/publication-3960.pdf
http://archimer.ifremer.fr/doc/00000/3960/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Fault affecting silicoclastic sediments are commonly enriched in clay minerals. Clays are sensitive to fluid–rock interactions and deformation mechanisms; in this paper, they are used as proxy for fault activity and behavior. The present study focuses on clay mineral assemblages from the Point Vert normal fault zone located in the Annot sandstones, a Priabonian-Rupelian turbidite succession of the Alpine foredeep in SE France. In this area, the Annot sandstones were buried around 6–8 km below the front of Alpine nappes soon after their deposition and exhumed during the middle-late Miocene. The fault affects arkosic sandstone beds alternating with pelitic layers, and displays throw of about thirty meters. The fault core zone comprises intensely foliated sandstones bounding a corridor of gouge about 20 cm thick. The foliated sandstones display clay concentration along S–C structures characterized by dissolution of K-feldspar and their replacement by mica, associated with quartz pressure solution, intense microfracturation and quartz vein precipitation. The gouge is formed by a clayey matrix containing fragments of foliated sandstones and pelites. However, a detailed petrographical investigation suggests complex polyphase deformation processes. Optical and SEM observations show that the clay minerals fraction of all studied rocks (pelites and sandstones from the damage and core zones of the fault) is dominated by white micas and chlorite. These minerals have two different origins: detrital and newly-formed. Detrital micas are identified by their larger shape and their chemical composition with a lower Fe–Mg content than the newly-formed white micas. In the foliated sandstones, newly-formed white micas are concentrated along S–C structures or replace K-feldspar. Both types of newly formed micas display the same chemical composition confirmed microstructural observations suggesting that they formed in the same conditions. They have the following structural formulas: Na0.05 K0.86 (Al 1.77 Fe0.08 Mg0.15) (Si3.22 Al0.78) O10 (OH)2. They are enriched in Fe and Mg compared to the detrital micas. Newly-formed chlorites are associated with micas along the shear planes. According to microprobe analyses, they present the following structural formula: (Al1,48 Fe2,50 Mg1,84) (Si2,82 Al1,18) O10 (OH)8. All these data suggest that these clay minerals are synkinematic and registered the fault activity. In the gouge samples, illite and chlorite are the major clay minerals; smectite is locally present in some samples.In the foliated sandstones, Kubler Index (KI) ((001) XRD peak width at half height) data and thermodynamic calculations from synkinematic chlorite chemistry suggest that the main fault deformation occurred under temperatures around 220 °C (diagenesis to anchizone boundary). KI measured on pelites and sandstones from the hanging and footwall, display similar values coherent with the maximal burial temperature of the Annot sandstones in this area. The gouge samples have a higher KI index, which could be explained by a reactivation of the fault at lower temperatures during the exhumation of the Annot sandstones formation
ISSN: 0191-8141

hal-01172423
https://hal.archives-ouvertes.fr/hal-01172423
DOI : 10.1016/j.jsg.2015.03.012

Éditeur(s) : Elsevier
Résumé : High-resolution sedimentological and micropaleontological studies of several deep-sea cores retrieved from the levees of the Celtic and Armorican turbidite systems (Bay of Biscay - North Atlantic Ocean) allow the detection of the major oscillations of the British-Irish Ice Sheet (BIIS) and 'Fleuve Manche' palaeoriver discharges over the last 30,000 years, which were mainly triggered by climate changes. Between 30 and 20 cal ka, the turbiditic activity on the Celtic-Annorican margin was weak, contrasting with previous stratigraphic models which predicted a substantial increase of sediment supply during low sea-level stands. This low turbidite deposit frequency was most likely the result of a weak activity of the 'Fleuve Manche' palaeoriver and/or of a reduced seaward transfer of sediments from the shelf to the margin. However, two episodes of turbiditic activity increase were detected in the Celtic-Armorican margin, during Heinrich events (HE) 3 and 2. This strengthening of the turbiditic activity was triggered by the meltwater releases from European ice sheets and glaciers favouring the seaward transfer of subglacial material, at least via 'Fleuve Manche' palaeoriver. At around 20 cal ka, a significant increase of turbidite deposit frequency occurred as a response to the onset of the last deglaciation. The retreat of the European ice sheets and glaciers induced a substantial increase of the 'Fleuve Manche' palaeoriver discharges and seaward transfer of continentally-derived material into the Armorican turbidite system. The intensification of the turbiditic activity on the Celtic system was directly sustained by the widespread transport of subglacial sediments from the British-Irish Ice Sheet (BIIS) to the Celtic Sea via the Irish Sea Basin. A sudden reduction of turbiditic activity in the Armorican system, between ca. 19 and 18.3 cal ka, could have been triggered by the first well known abrupt sea-level rise ('meltwater pulse', at around 19 cal ka) favouring the trapping of sediment in the 'Fleuve Manche' palaeoriver valleys and the decrease of the seaward transfer of continentally-derived material. The maximum of turbiditic activity strengthening in the Celtic-Armorican margin, between ca. 18.3 and 17 cal ka, was induced by the decay of European ice sheets and glaciers producing the most extreme episode of the 'Fleuve Manche' palaeoriver runoff and a great seaward transfer of subglacial material into the Bay of Biscay, Between ca. 17.5 and 16 cal ka, the turbiditic activity significantly decreased in both Celtic and Armorican turbidite systems in response to a global re-advance of glaciers and ice sheets in Europe. The last episode of ice sheet retreat, between ca. 16 and 14 cal ka, is well expressed in the Celtic system by a new increase of the turbiditic activity. The major episode of sea-level rise at around 14 cal ka ('Meltwater Pulse 1A'), precluding the seaward transfer of sediments, induced the end of turbiditic activity in both the Celtic and the Armorican system. Although two main phases of global sea-level rise seem to have had an effect on the Celtic-Armorican margin, this work proposes the BUS retreat and associated riverine discharges as the main trigger mechanisms of the turbiditic activity in this region during the last 30,000 years.
Marine Geology (0025-3227) (Elsevier), 2008 , Vol. 247 , N. 1-2 , P. 84-103

Droits : 2008 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2008/publication-3729.pdf
DOI:10.1016/j.margeo.2007.08.006
http://archimer.ifremer.fr/doc/00000/3729/

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureushost cell interactions.
journées des Microbiologistes de l' INRA 2012
L'Isle sur la Sorgue, France

hal-01209365
https://hal.archives-ouvertes.fr/hal-01209365
PRODINRA : 174569

Éditeur(s) : HAL CCSD
Résumé : This historical perspective provides an overall view of the main steps that led to the acceptance of the concept of mantle exhumation accompanying lithosphere stretching and extreme crustal thinning. We first remember that the presence of exposures of mantle rocks along oceanic spreading ridges was early reported in the 60's due to the results of sediment cores and dredge hauls collected along the Mid-Atlantic Ridge. In the meantime, detailed analysis of the relationships between oceanic sediments of Late Jurassic age and their primary basement in the Apennine ophiolites led many authors to point to the importance of exhumation of mantle rocks on ancient seafloors. By contrast to the thick sections of classical ophiolites (e.g. Oman), the Alpine-Corsican-Appennine ophiolites are characterized by a relatively small amount of mafic rocks (gabbros and basalts), by the absence of any sheeted dyke complex and by the frequent occurrence of oceanic sediments stratigraphically overlying mantle-derived peridotites and associated gabbroic intrusions. They display some of the characteristics of slow-spreading ridge systems, but, due to their highly tectonized character, they have been interpreted successively either as remnants of oceanic fracture zones of normal ocean or as remnants of very-poorly organized, abnormal oceanic basement. This review shows how the concept of mantle exhumation has been elaborated more or less in the same period both by marine geoscientists and by geologists conducting investigations in ophiolitic units of the Alps-Apennines mountain belt. Dredging and diving results from the Gorringe Bank, the Iberia margin, the Thyrrenian Sea and the Central Atlantic in the 1980's and 1990's provided additional proofs that the mantle is currently exhumed in various oceanic environments, including distal continental margins, back-arc basins and slow-spreading ridges of wide oceans. It is shown finally how renewed cross-information from mountain belts and the oceans, multiplying the examples of sedimentary reworking of mantle material, help better constrain the mechanisms of mantle exhumation. This mechanism progressively appeared as a fundamental step during the processes of extension of both continental and oceanic lithospheres in numerous geological situations worldwide.
Bollettino della Società Geologica Italiana

hal-00475653
https://hal.archives-ouvertes.fr/hal-00475653
DOI : 10.3301/IJG.2009.128.2.279

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureus-host cell interactions.
International Symposium on Staphylococci and Staphylococcal Infections -ISSSI-2012
Lyon, France

hal-01209356
https://hal.archives-ouvertes.fr/hal-01209356
PRODINRA : 173265

Résumé : L’arc des Petites Antilles résulte de la lente subduction vers l'Ouest des plaques Nord et Sud-Américaines sous la plaque Caraïbes (2cm/an). A la latitude de l’archipel guadeloupéen et à ~150 km à l’Ouest du front de déformation, le bassin d'avant-arc de Marie-Galante forme un bassin perché, incliné vers la fosse et limité vers l’Est par un haut-fond, l’Eperon Karukéra. À cette latitude, le bassin de Marie-Galante domine le prisme d’accrétion de la Barbade et fait face à la ride de Tiburon qui balaye la zone du Nord au Sud depuis la fin du Miocène supérieur. Le remplissage sédimentaire du Bassin de Marie-Galante montre des déformations actives au moins depuis ~30 millions d’années. L’objectif du travail est de reconstituer l’évolution tectono-sédimentaire de ce bassin pour apporter de nouvelles contraintes sur la compréhension globale de la zone de subduction frontale des Petites Antilles. Ce travail s'appuie sur les données de bathymétrie multifaisceaux et de sismique réflexion multi-traces haute résolution acquises lors des campagnes du programme KaShallow. Cette base de données, complétée de profils sismiques plus basse résolution de campagnes antérieures, permet d’avoir une couverture pseudo 3D et à quatre échelles de résolution de l'ensemble du bassin. Un échantillonnage par ROV et carottage ciblé a fourni 40 prélèvements dans les principales unités sismiques. Les analyses pétrologiques et les datations biostratigraphiques autorisent des reconstitutions paléo-environnementales depuis le Paléogène supérieur jusqu’à Actuel. L’interprétation sismique multi-échelle montre un bassin sédimentaire atteignant ~4,5s temps double (~4500 à 5625 m) sur un substratum magmatique pré-structuré. Ce bassin est composé de 5 grands ensembles sédimentaires (E-1, E1, E2, E3 et E4) subdivisés en 13 unités limitées par 14 surfaces de discontinuités. L’organisation séquentielle des unités sismiques permet de mettre en évidence 10 séquences de dépôts de troisièmes ordres (S-1 à S9). Le calage biostratigraphique de l’ensemble des séquences permet de proposer une évolution tectono-sédimentaire du bassin de l’Éocène à l’Actuel. Ainsi, nous distinguons quatre systèmes de failles normales associées à trois phases d’extensions qui contrôlent l’évolution architecturale et sédimentaire du bassin. 1/ Un système N050±10°E hérité, actif dès le Paléogène supérieur, qui contrôle le basculement général du bassin vers le SSE. Il est responsable de la formation de l'escarpement de Désirade d’environ 4500 m de dénivelé. Cette première extension est interprétée comme résultant de la fragmentation de l'avant-arc en réponse à l'augmentation du rayon de courbure de la zone de subduction. 2/ Un système N130°-N150°E, structurant à l’échelle de l’Éperon Karukéra, qui contrôle la sédimentation dès le Miocène inférieur et marque une première phase d'extension transverse à l’arc. 3/ Un système N160°-N180°E qui segmente le Bassin de Marie-Galante en un sous-bassin à l'Ouest et l'Éperon Karukéra à l'Est. Cette seconde extension, globalement perpendiculaire à la marge, s'accompagne d’une subsidence et d'une inversion de la polarité du bassin en réponse à son basculement vers la fosse qui débute au cours du Miocène moyen et se poursuit actuellement à l'Est du bassin. Cette évolution à long terme de l'avant-arc, concomitante avec le recul de l'arc volcanique vers l’Ouest, est considérée comme résultant d’une érosion basale de la plaque supérieure. 4/ Un système N090±10°E plus tardif est localisé au centre du bassin et qui contrôle le développement de plates-formes carbonatées néritiques sur certaines têtes de blocs, comme par exemple à Marie-Galante. Cette dernière extension, parallèle à l’arc, se manifeste dans le bassin à partir du Pliocène inférieur. Elle se superpose au régime d'extension perpendiculaire à l'avant-arc et est interprétée comme l'accommodation du partitionnement de la déformation en réponse à l’obliquité croissante du front subduction vers le Nord.
The Lesser Antilles result of the slow westward subduction of the North and South American plate under the Caribbean plate (2 cm / year). At the latitude of the Guadeloupe archipelago and ~ 150 km to the west of the deformation front, the fore-arc basin of Marie-Galante forms a perched basin tilted to the pit and limited to the East by a shoal, the Spur Karukéra. At this latitude, Marie-Galante basin dominates the accretionary prism of Barbados and faces wrinkle Tiburon sweeping the area from North to South from the late Miocene. The sedimentary fill Basin Marie-Galante shows active deformation since at least ~ 30 million years. The aim of the work is to reconstruct the tectono-sedimentary evolution of the basin to provide new constraints on the overall understanding of the frontal subduction zone Lesser Antilles. This work relies on multibeam bathymetry data and high-resolution seismic reflection multi-traces acquired during campaigns KaShallow program. This database, supplemented by lower resolution of previous campaigns seismic profiles, provides a pseudo-3D coverage and four scales of resolution of the entire basin. ROV sampling and targeted core provided 40 samples in the main seismic units. Petrological analysis and biostratigraphic dating allow paleoenvironmental reconstructions from the upper Paleogene up Actuel. Seismic interpretation multiscale shows a sedimentary basin reaching ~ 4,5s double (~ 4500-5625 m) on a substrate pre-structured magma. This basin consists of 5 main sedimentary units (E-1, E1, E2, E3 and E4) divided into 13 units bounded by discontinuities 14 surfaces. The sequential organization of seismic units allows to highlight sequences 10 deposits of third order (S-1 to S9). The biostratigraphic calibration of all sequences able to offer a tectono-sedimentary evolution of the Eocene basin to Present. Thus, we distinguish four normal fault systems associated with three phases of extensions that control the architectural and sedimentary evolution of the basin. 1 / A system N050 ± 10 ° E inherited assets from the upper Paleogene, which controls the overall pelvic tilt towards the SSE. He is responsible for the formation of the escarpment Désirade about 4500 m elevation. The first extension is interpreted as resulting from the fragmentation of the fore-arc in response to the increase in the radius of curvature of subduction. 2 / A system N130 ° -N150 ° E, structuring across the Spur Karukéra, which controls sediment from the Miocene and marks the first phase of transverse extension arc. 3 / A system N160 ° E ° -N180 which segments Basin Marie-Galante in a sub-basin to the west and the Spur Karukéra in the East. This second extension, generally perpendicular to the margin, is accompanied by subsidence and reversing the polarity of the basin in response to his switch to the pit, beginning during the Middle Miocene and is ongoing in the East the basin. This long-term evolution of the forearc, concurrent with the decline in volcanic arc to the west, is considered as resulting from a basal erosion of the top plate. 4 / A system N090 ± 10 ° later E is located in the center of the basin and controlling the development of neritic carbonate platforms on certain blocks heads, such as Marie-Galante. This latest extension, parallel to the arc occurs in the basin from the lower Pliocene. It is superimposed on the expansion plan perpendicular to the fore-arc and is interpreted as the accommodation of the partitioning of deformation in response to the increasing obliquity front subduction north.

http://www.theses.fr/2014AGUY0799/document

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
To forecast marine disease outbreaks as oceans warm requires new environmental surveillance tools. We describe an iterative process for developing these tools that combines research, development and deployment for suitable systems. The first step is to identify candidate host–pathogen systems. The 24 candidate systems we identified include sponges, corals, oysters, crustaceans, sea stars, fishes and sea grasses (among others). To illustrate the other steps, we present a case study of epizootic shell disease (ESD) in the American lobster. Increasing prevalence of ESD is a contributing factor to lobster fishery collapse in southern New England (SNE), raising concerns that disease prevalence will increase in the northern Gulf of Maine under climate change. The lowest maximum bottom temperature associated with ESD prevalence in SNE is 128C. Our seasonal outlook for 2015 and long-term projections show bottom temperatures greater than or equal to 128C may occur in this and coming years in the coastal bays of Maine. The tools presented will allow managers to target efforts to monitor the effects of ESD on fishery sustainability and will be iteratively refined. The approach and case example highlight that temperature-based surveillance tools can inform research, monitoring and management of emerging and continuing marine disease threats.
ISSN: 0080-4622

Droits : http://creativecommons.org/licenses/by/
hal-01282834
https://hal-univ-perp.archives-ouvertes.fr/hal-01282834
https://hal-univ-perp.archives-ouvertes.fr/hal-01282834/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01282834/file/20150208.full.pdf
DOI : 10.1098/rstb.2015.0208

Éditeur(s) : Society for Sedimentary Geology
Résumé : The Kramis deep-sea fan extends over 45 km at the base of the western Algerian continental slope between 2000 and 2550 m water depth and covers an area of approximately 1200 km2. The Kramis Fan was initiated after Messinian time, evolved during the Plio-Quaternary, and, is still active, as proved by submarine cable breaks during the 1954 Orléansville earthquake. The Kramis Fan is fed by two perpendicular canyons: the Kramis Canyon and the Khadra Canyon, merging in a single E–W-oriented channel confined at the foot of the slope. It is strongly asymmetric with a super-developed levee on the right-hand side of the channel, the Kramis Ridge. Based on recent multibeam, side-scan sonar, and sediment core data (Maradja, 2003 and 2005, Prisma, 2004, and Prisme, 2007 cruises), we describe the morphology and internal structure of the fan and particularly the sediment ridge, showing marked lateral changes in the sediment-wave morphology and their association with a series of large scours in the intermediate part of the ridge aligned in the continuity of the Khadra Canyon direction. Overall, the Kramis Ridge is formed by turbidity currents overspilling the ridge crest, which is 100 m above the channel floor, with two exceptions. In the distal part of the ridge the subdued ridge-crest height probably causes continuous overspill, testified by sediment waves migrating parallel to the channel. The scours occur in the intermediate part of the ridge where the ridge height is only 50–60 m; scours are interpreted as the result of cyclic steps due to flow stripping of currents provided by the intersection of the Khadra Canyon with the Kramis Canyon and Channel system. The scours probably postdate the main growth of the Kramis Ridge and induce the local erosion of the ridge, which could correspond to a new channel initiation cutting the ridge. The superposition or the interaction of flows with different directions is responsible of the amplification of the size of the sediment waves with erosional downside flanks and their transformation in scours. The Kramis Fan provides a clear example of flow interaction to explain the presence of large sediment waves and scours on modern submarine fans.
SEPM Special Publication (1060-071X) (Society for Sedimentary Geology), 2012 , Vol. 99 , P. 293-308

Droits : 2012 SEPM (Society for Sedimentary Geology)
http://archimer.ifremer.fr/doc/00129/24021/21978.pdf
http://archimer.ifremer.fr/doc/00129/24021/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The N-S oriented Raghane shear zone (8 degrees 30') delineates the western boundary of the Saharan metacraton and is, with the 4 degrees 50' shear zone, the most important shear zone in the Tuareg shield. It can be followed on 1000 km in the basement from southern Air, Niger to NE Hoggar, Algeria. Large subhorizontal movements have occurred during the Pan-African orogeny and several groups of granitoids intruded during the Neoproterozoic. We report U-Pb zircon datings (laser ICP-MS) showing that three magmatic suites of granitoids emplaced close to the Raghane shear zone at c. 790 Ma, c. 590 and c. 550 Ma. A comprehensive and detailed (158 sites, more than 1000 cores) magnetic fabric study was performed on 8 plutons belonging to the three magmatic suites and distributed on 200 km along the Raghane shear zone. The main minerals in all the target plutons do not show visible preferential magmatic orientation except in narrow shear zones. The AMS study shows that all plutons have a magnetic lineation and foliation compatible with the deformed zones that are zones deformed lately in post-solidus conditions. These structures are related to the nearby mega-shear zones, the Raghane shear zone for most of them. The old c. 793 Ma Touffok granite preserved locally its original structures. The magnetic structures of the c. 593 Ma Ohergehem pluton, intruded in the Aouzegueur terrane, are related to thrust structures generated by the Raghane shear zone while it is not the case of the contemporaneous plutons in the Assode-Issalane terrane whose structures are only related to the subvertical shear zones. Finally, the c. 550 Ma granite group has magnetic structure related to the N-S oriented Raghane shear zone and its associated NNE-SSW structures when close to them, but NW-SE oriented when further. These NW-SE oriented structures appear to be characteristic of the late Neoproterozoic evolution of the Saharan metacraton and are in relation to the convergence with the Murzuq craton. This evolution reflects the rheological contrast existing along the Raghane shear zone marking the western boundary of the Saharan metacraton.
ISSN: 0040-1951

hal-00429354
https://hal.archives-ouvertes.fr/hal-00429354
DOI : 10.1016/j.tecto.2009.04.022

Éditeur(s) : Gauthier-Villars
Résumé : Marine muds deposited on the French Guiana coast mostly originate in the Amazon. Recent sediments are composed of (a) illite (33 %) and chlorite (13 %) of Andean mountain origin; and (b) kaolinite (28 %) and smectite (26 %), principally from the Amazonian lowlands but also from the Guiana Shield. In the coastal mud prism, high-resolution seismic profiles, together with sedimentological, micropaleontological and soil engineering studies, supplemented by C-14 dates, permitted a stratigraphic interpretation of eight cores. Three episodes have been determined on the basis of clay-mineral variations related to Amazonian lowland, Andean and Guiana shield sources. The older episodes 3 (3000-1700 y BP) and 2 (1700-1000 y BP) are predominantly characterized by lowland-derived clays (smectite = 43 %, kaolinite = 26 %) from Amazonian and local sources. The most important event is a reduction of the Andean source, due to successive dry phases which occurred in western Amazonia about 2200 and 1200 y BP, confirming that regional decreases in rainfall, water discharge and erosion were associated with climatic fluctuations. It is suggested that these dry phases (within the last 3000 years) are the consequence of several protracted (10-100 years) periods, during which atmospheric conditions mimicked the present-day ''El Nino Southern Oscillation'' (ENSO) phenomenon. As a result, particulate flux from the ocean decreased, leading to reduced silting of the Guiana coast, In the past 1000 years (episode 1), illite and chlorite have increased, indicating a stronger Andean contribution to the Amazonian continental flux that reaches the ocean. This is the first demonstration that the nature of the coastal marine muds of northern South America reflects climatic changes in the Amazon basin.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1996 , Vol. 19 , N. 5 , P. 477-487

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00094/20506/18175.pdf
http://archimer.ifremer.fr/doc/00094/20506/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Properly assessing the extent and magnitude of fault ruptures associated with large earthquakes is critical for understanding fault behavior and associated hazard. Submarine faults can trigger tsunamis, whose characteristics are defined by the geometry of seafloor displacement, studied primarily through indirect observations (e.g., seismic event parameters, seismic profiles, shipboard bathymetry, coring) rather than direct ones. Using deep-sea vehicles, we identify for the first time a marker of coseismic slip on a submarine fault plane along the Roseau Fault (Lesser Antilles), and measure its vertical displacement of ∼0.9 m in situ. We also map recent fissuring and faulting of sediments on the hangingwall, along ∼3 km of rupture in close proximity to the fault's base, and document the reactivation of erosion and sedimentation within and downslope of the scarp. These deformation structures were caused by the 2004 M w 6.3 Les Saintes earthquake, which triggered a subsequent tsunami. Their characterization informs estimates of earthquake recurrence on this fault and provides new constraints on the geometry of fault rupture, which is both shorter and displays locally larger coseismic displacements than available model predictions that lack field constraints. This methodology of detailed field observations coupled with near-bottom geophysical surveying can be readily applied to numerous submarine fault systems, and should prove useful in evaluating seismic and tsunamigenic hazard in all geodynamic contexts.
ISSN: 0012-821X

insu-01557932
https://hal-insu.archives-ouvertes.fr/insu-01557932
https://hal-insu.archives-ouvertes.fr/insu-01557932/document
https://hal-insu.archives-ouvertes.fr/insu-01557932/file/EPSL-2006-escartin.pdf
DOI : 10.1016/j.epsl.2016.06.024