Éditeur(s) : Gauthier-Villars
Résumé : Samples of recent sediments and marine organisms from seven coastal lagoons along the Mexican coast of the Gulf of Mexico were analyzed by gas chromatography and GC-MS coupled system to determine the present levels of fossil hydrocarbons. Results show that the highest concentrations of fossil hydrocarbons are present in organisms and sediments located near petrochemical plants and oil refineries, indicating that petroleum hydrocarbons are being released into the coastal lagoons. Stable carbon isotope ratios (12C/13C) of sedimentary organic carbon in sediment and organism samples were also determined. For most of the lagoons, the delta 13C ratios for sediments ranged from -19.0 to -23.9%, anomalous ratios ranging from -26.8 to -29.3% were shown for sediments and organisms (oysters) of two of the studied areas, probably because of the presence of organic carbon from anthropogenic terrestrial sources.
Oceanologica Acta, Special issue (0399-1784) (Gauthier-Villars), 1982

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00246/35713/34222.pdf
http://archimer.ifremer.fr/doc/00246/35713/

Éditeur(s) : Communication, ICES Conference and Meeting (CM), 2010, Nantes
Résumé : Chlordecone is a very persistent insecticide used in banana plantations of the French West Indies between 1972 and 1993. Chlordecone residues were found in inland water, in agricultural and freshwater products, and in marine organisms. This pollution has become of great concern in 2007. Therefore, a governmental action Plan was launched to better assess the pollution and to improve the consumer’s protection. Within this plan, 1048 samples from 69 different species of marine fishes and crustaceans were collected all around both the Guadeloupe and the Martinique Islands and analyzed. The results confirm the presence of chlordecone in marine organisms, with highly variable concentrations (from the detection limit to 1000 μg.kg-1). In 17.9 % of the samples, concentrations exceeded 20 μg.kg-1, the maximum acceptable level in fish according to the French regulation (Anon, 2008). Two main features of this contamination were characterized. 1) Because of the sedimentation of contaminated suspended soil particles, the sheltered bays are more exposed to chlordecone than the open coast where terrigenous flux are dispersed. 2) Species biology, particularly their lifestyle and diet, appear to influence contamination levels. Thus, the more contaminated species live in relation with sediment or are at high trophic level. These results have directly supported political decisions in order to prevent too high exposure of consumers to chlordecone. Fishing activities in sheltered bays have been forbidden for potentially highly contaminated species like benthic crustaceans and top predators. Further studies are under way to assess the importance of the trophic transport of chlordecone within the foodweb, and to evaluate the historical deposition of this insecticide in sediment and its further bioavailability.

Droits : 2010 ICES/CIEM ; Ifremer
http://archimer.ifremer.fr/doc/00014/12511/9361.pdf
http://archimer.ifremer.fr/doc/00014/12511/

Résumé : Shouldn't Earth, the human planet, be called the algae planet? First appearing 3.5 billion years ago, algae have always been objective allies of life and humans. Brought about by algae, oxygen and the ozone layer allowed plant and animal life to develop in oceans and on continents. They offer spawning grounds and feeding grounds for marine fauna....
La Terre, dite planète des hommes, n'est-elle pas en réalité celle des algues? Présentes il y a 3,5 milliards d'années, elles ont toujours été les alliées objectives de la vie et des hommes. Nous leur devons l'oxygène et la couche d'ozone qui ont permis la vie végétale et animale en mer et sur les continents. Elles servent de frayères et de nourriceries à la faune marine. Les algues ont toujours été offertes à l'homme pour sa nourriture et les besoins les plus divers. Algues brunes, vertes, rouges fournissent les substances, alginates, carraghénanes, agars, que l'industrie adapte à des usages innombrables entrant de plus en plus dans la vie moderne, qu'il s'agisse de matériaux courants (textiles, papiers, films, peintures), de toutes sortes d'aliments pour l'homme ou les animaux d'élevage, de médicaments, de produits de beauté,... La transformation des algues est parmi les secteurs les plus performants et les plus innovants de l'industrie moderne. L'avenir est prometteur pour les antibiotiques, antivirus et anticoagulants qu'elles contiennent. / Mais, les peuplements naturels ne suffisent plus à satisfaire cette demande. Il a fallu recourir à la culture des algues. Plus de 530 000 hectares y sont consacrés, 900 000 algoculteurs y travaillent dans 200 000 entreprises familiales, 250 usines conditionnent les produits. L'algoculture est la branche la plus forte de l'aquaculture. Cet ouvrage fait l'inventaire des méthodes utilisées dans le monde, surtout en Extrême-Orient, au moment où l'on passe de la culture toute simple à celle gérée par ordinateur, en un temps où il apparaît de plus en plus que l'algoculture pourrait être une des sources de cette énergie propre dont l'humanité aura immanquablement besoin. Cette synthèse s'adresse non seulement aux scientifiques qui y trouveront un point des connaissances màis à tous ceux, algoculteurs, industriels, aménageurs, écologistes, qui tireront le meilleur parti de cette somme d'expériences. Qui s'intéresse aux algues y trouve un livre de base. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1992/rapport-4402.pdf
http://archimer.ifremer.fr/doc/00000/4402/

Éditeur(s) : Université Paul Sabatier, Toulouse III
Résumé : The marine phytoplankton in the ocean represents only less than 1% of global biomass. Phytoplankton performs half of all photosynthesis. This autotrophic biomass in ocean is then an essential element in the climate regulation through processes as carbon dioxide absorption during the photosynthesis. Therefore, we need to estimate precisely this biomass as well as the processes which affect it. Using remotely sensed data (altimetry and ocean colour) and a coupled physical/biogeochemical model (MERCATOR-OPA/NPZDDON), Rossby waves and their influence on phytoplankton biomass are specifically studied in the North Atlantic Ocean. Their features and their influences on surface chlorophyll concentrations were analysed. Through the different mechanisms identified, we estimated that these waves can induce local increases from 60% to 150% of the estimated primary production.
Même si l'océan ne représente que moins de 1% de la biomasse liée aux plantes sur la terre, il est responsable de près de la moitié de la photosynthèse nette de la biosphère. Cette biomasse est par conséquent un élément essentiel dans la régulation du climat à travers par exemple le cycle océanique du carbone. Il est donc nécessaire d'estimer correctement cette biomasse ainsi que les processus qui l'affectent. A l'aide de données satellites altimétriques et couleur de l'eau et d'un modèle couplé physique/biogéochimie (MERCATOR-OPA / NPZDDON), les ondes de Rossby et leur influence sur cette biomasse sont spécifiquement étudiées dans l'océan Atlantique Nord. Leurs propriétés et leur influence sur les concentrations en chlorophylle de surface sont analysées. Au travers des mécanismes mis en jeu identifiés, nous estimons que ces ondes peuvent entraîner une augmentation locale comprise entre 60% et 150% de la production primaire estimée.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2454.pdf
http://archimer.ifremer.fr/doc/00000/2454/

Éditeur(s) : HAL CCSD Wiley/Blackwell
Résumé : International audience
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosphere. The ongoing environmental metabarcoding revolution opens the perspective for holistic ecosystems biological studies of these organisms, in particular the unicellular microalgae that often lack distinctive morphological characters and have complex life cycles. To interpret environmental sequences, metabarcoding necessarily relies on taxonomically curated databases containing reference sequences of the targeted gene (or barcode) from identified organisms. To date, no such reference framework exists for photosynthetic eukaryotes. In this study, we built the PhytoREF database that contains 6490 plastidial 16S rDNA reference sequences that originate from a large diversity of eukaryotes representing all known major photosynthetic lineages. We compiled 3333 amplicon sequences available from public databases and 879 sequences extracted from plastidial genomes, and generated 411 novel sequences from cultured marine microalgal strains belonging to different eukaryotic lineages. A total of 1867 environmental Sanger 16S rDNA sequences were also included in the database. Stringent quality filtering and a phylogeny-based taxonomic classification were applied for each 16S rDNA sequence. The database mainly focuses on marine microalgae, but sequences from land plants (representing half of the PhytoREF sequences) and freshwater taxa were also included to broaden the applicability of PhytoREF to different aquatic and terrestrial habitats. PhytoREF, accessible via a web interface (http://phytoref.fr), is a new resource in molecular ecology to foster the discovery, assessment and monitoring of the diversity of photosynthetic eukaryotes using high-throughput sequencing.
ISSN: 1755-098X

hal-01149047
http://hal.upmc.fr/hal-01149047
http://hal.upmc.fr/hal-01149047/document
http://hal.upmc.fr/hal-01149047/file/Decelle_2015_PhytoREF.pdf
DOI : 10.1111/1755-0998.12401

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Analysis of microbial biodiversity is hampered by a lack of reference genomes from most bacteria, viruses, and algae. This necessitates either the cultivation of a restricted number of species for standard sequencing projects or the analysis of highly complex environmental DNA metagenome data. Single-cell genomics (SCG) offers a solution to this problem by constraining the studied DNA sample to an individual cell and its associated symbionts, prey, and pathogens. We used SCG to study marine heterotrophic amoebae related to Paulinella ovalis (A. Wulff) P.W. Johnson, P.E. Hargraves & J.M. Sieburth (Rhizaria). The genus Paulinella is best known for its photosynthetic members such as P.chromatophora Lauterborn that is the only case of plastid primary endosymbiosis known outside of algae and plants. Here, we studied the phagotrophic sister taxa of P.chromatophora that are related to P.ovalis and found one SCG assembly to contain -cyanobacterial DNA. These cyanobacterial contigs are presumably derived from prey. We also uncovered an associated cyanophage lineage (provisionally named phage PoL_MC2). Phylogenomic analysis of the fragmented genome assembly suggested a minimum genome size of 200Kbp for phage PoL_MC2 that encodes 179 proteins and is most closely related to Synechococcus phage S-SM2. For this phage, gene network analysis demonstrates a highly modular genome structure typical of other cyanophages. Our work demonstrates that SCG is a powerful approach for discovering algal and protist biodiversity and for elucidating biotic interactions in natural samples.
ISSN: 0022-3646

hal-01544797
https://hal.archives-ouvertes.fr/hal-01544797
DOI : 10.1111/jpy.12028

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Epigenetics, as a DNA signature that affects gene expression and enables rapid reaction of an organism to environmental changes, is likely involved in the process of biological invasions. DNA methylation is an epigenetic mechanism common to plants and animals for regulating gene expression. In this study we show, for the first time in any marine species, significant reduction of global methylation levels during the expansive phase of a pygmy mussel (Xenostrobus securis) recent invasion in Europe (twoyear old), while in older introductions such epigenetic signature of invasion was progressively reduced. Decreased methylation was interpreted as a rapid way of increasing phenotypic plasticity that would help invasive populations to thrive. This epigenetic signature of early invasion was stronger than the expected environmental signature of environmental stress in younger populations sampled from ports, otherwise detected in a much older population (>90 year old) of the also invasive tubewormFicopomatus enigmaticus established in similar locations. Higher epigenetic than genetic diversity found in X. securis was confirmed from F. enigmaticus samples. As reported for introduced plants and vertebrates, epigenetic variation could compensate for relatively lower genetic variation caused by founder effects. These phenomena were compared with epigenetic mechanisms involved in metastasis, as parallel processes of community (biological invasion) and organism (cancer) invasions.
ISSN: 2045-2322

hal-01488962
https://hal-univ-perp.archives-ouvertes.fr/hal-01488962
https://hal-univ-perp.archives-ouvertes.fr/hal-01488962/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01488962/file/Epigenetic.pdf
DOI : 10.1038/srep42193

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
DNA cytosine methylation is a widely conserved epigenetic mark in eukaryotes that appears to have critical roles in the regulation of genome structure and transcription. Genome-wide methylation maps have so far only been established from the supergroups Archaeplastida and Unikont. Here we report the first whole-genome methylome from a stramenopile, the marine model diatom Phaeodactylum tricornutum. Around 6% of the genome is intermittently methylated in a mosaic pattern. We find extensive methylation in transposable elements. We also detect methylation in over 320 genes. Extensive gene methylation correlates strongly with transcriptional silencing and differential expression under specific conditions. By contrast, we find that genes with partial methylation tend to be constitutively expressed. These patterns contrast with those found previously in other eukaryotes. By going beyond plants, animals and fungi, this stramenopile methylome adds significantly to our understanding of the evolution of DNA methylation in eukaryotes.
ISSN: 2041-1723

hal-01545322
https://hal.archives-ouvertes.fr/hal-01545322
DOI : 10.1038/ncomms3091

Éditeur(s) : Elsevier Sci Ltd
Résumé : The quantity and the source of organic matter preserved in the Recent turbiditic channel-levees systems around 4000 m-depth off the Congo River were determined using bulk geochemical approaches (Rock-Eval, elemental and isotopic analyses) as well as molecular and optical analyses on selected samples. These mud-rich sediments contain high amount of organic matter (3% Corg on average), the origin of which is a mixture of terrestrial higher-plant debris and deeply oxidized phytoplanktonic material. Although the relative contribution of continental source versus marine source of the organic matter cannot be precisely quantified, the continental fraction appears significant (at least 70-80%) especially for such depths and distances from the coast. The organic matter distribution appears very homogeneous at different scales, from the single turbiditic event to the entire levee, and changes in accumulation rates have a little impact on the quantity and quality of preserved organic matter. With a petroleum potential around 4.5 kg HC per t rock, the fine-grained turbiditic sediments in the Congo deep-sea system could be regarded as an analog of gas-prone source rocks for the deep offshore of the Atlantic margins. Finally, the Congo deep-sea turbiditic system is a major conveyor of organic carbon to the deep ocean. Further studies are needed to evaluate the efficiency of such systems for the storage of continental organic matter into the deep ocean in relation to sea-level and climatic changes. (C) 2010 Elsevier Ltd. All rights reserved.
Marine And Petroleum Geology (0264-8172) (Elsevier Sci Ltd), 2010-05 , Vol. 27 , N. 5 , P. 995-1010

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00006/11700/9285.pdf
DOI:10.1016/j.marpetgeo.2010.02.006
http://archimer.ifremer.fr/doc/00006/11700/

Résumé : First results obtained on mussels introduced in the Goury harbour on 12 June 2002 and collected on 20 March 2003 enabling a first approach of living material non-active contamination level next to the Cogema plant in La Hague. As a conclusion, COGEMA's industrial activity could have an effect on living materials, with a slight rise in the cadmium, mercury and zinc concentrations observed in mussel flesh, but without exceeding sanitary norms.
Premiers résultats obtenus sur un lot de moules introduit au port de Goury le 12 juin 2002 et récolté le 20 mars 2003 permettant d'avoir une première approche du niveau des contaminations non actives de la matière vivante dans un secteur proche de l'usine de Cogema à La Hague. En conclusion, il se pourrait qu'il y ait un effet de l'activité industrielle de la COGEMA, avec une très légère augmentation des concentrations observées dans la chair des moules en cadmium, en mercure et en zinc, mais sans jamais générer des dépassements des normes sanitaires.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2003/rapport-3833.pdf
http://archimer.ifremer.fr/doc/00000/3833/

Éditeur(s) : London : printed for the author
Résumé : "Epigraphe au verso du titre : "Qui maris atque telluris stupendas metamorphoses contemplari cupit, vix ullibi terrarum reperiet commodiorem occasionem" Lin. Orat. Edition originale - Dédicace au prince de Galles. - Liste des souscripteurs. - Index. - Bandeaux et culs-de-lampe gravés sur bois - 49 planches gravées sur cuivre (38 pour la flore et 11 pour la faune) d'après G.D. Ehret et F. Garden. - Manquent les 2 cartes dépliantes de la Jamaïque. - Demi-reliure papier peigné, fin 18e-début 19e siècle. - Quelques annotations manuscrites au crayon, écriture du 19e siècle. Un feuillet volant annoté inséré entre les p. 222 et 223. - Plante séchée insérée entre les p. 350 et 351. - Cachet de la bibliothèque de la Ville de Bordeaux Brunet, I, 1282. - Chalmers, The General Biographical Dictionary, VII, p. 134. - Sabin, 8670"
Siècle(s) traité(s) : 18
Droits : Domaine public
Provenance : Ville de Bordeaux. Bibliothèque municipale
Permalien : http://www.manioc.org/patrimon/BBX17028
BBX17028