Résumé : Dans le cadre de la promotion de systèmes de culture alternatifs à moindres intrants chimiques, des études sur l'introduction de plantes de service ayant vocation à réduire l'usage des pesticides et engrais azotés mobilisent un effort de recherche considérable. Dans le cadre de la production bananière pour laquelle la nuisibilité causée par les nématodes phytoparasites constitue l'une des principales contraintes, une des principales alternatives à l'utilisation de nématicides chimiques repose sur l'usage raisonné en rotation ou en association culturale de plantes de service à propriétés nématorégulatrices. Parmi les espèces candidates, celles du genre Crota/aria spp. ont largement été étudiées en raison de leur aptitude à contrôler les nématodes phytoparasites. Une méta-analyse révèle cependant que même si de nombreux auteurs s'accordent à reconnaître les propriétés allélopathiques des plantes de cette espèce, ils sont également enclins à reconnaître la forte variabilité d'expression de ces propriétés vis-à-vis du contrôle des nématodes selon les situations expérimentées. L'objectif de ce travail repose sur la compréhension du déterminisme biochimique des exsudats. La stratégie expérimentale mise en oeuvre a consisté à tester en conditions contrôlées le comportement biochimique des exsudats racinaires de deux espèces de crotalaires (C retusa, C spectabilis) et d'une espèce sensible, le bananier dessert (Musa spp.) en fonction i) de conditions biotiques variées -i.e. présence ou non de nématodes (Radopholus similis et Meloidogyne arenariaï, et présence ou non de mycorhizes-, ii) de conditions abiotiques contrastées -i.e. utilisation d'un sol naturel vs. substrat neutre, ajout ou non d'engrais chimique. La méthodologie innovante des «plantes à traire » (Brevet INRA) a été requise pour pouvoir travailler sur les exsudats racinaires des plantes conditionnées plutôt que sur des Iixiviats, comme réalisé dans des expérimentations antérieures.Les résultats obtenus en spectrophométrie visible montrent que la modification des conditions abiotiques affecte de manière importante les profils biochimiques des plantes étudiées. En présence du nématode 1..·1. arenaria les profils biochimiques des deux crotalaires sont également modifiés. Des biotests réalisés à l'aide des exsudats racinaires conditionnés au préalable par les modifications biotiques ont permis de démontrer l'effet nématostatique des crotalaires. Des analyses biochimiques en Ge-MS mettent en évidence de manière plus précise des molécules actives mises en jeu sous différentes modalités biotiques et abiotiques. Ces recherches, de portée générique, permettront de mieux comprendre les conditions de l'environnement qui régulent les profils biochimiques des exsudats racinaires des crotalaires et par extension, seront applicables aux recherches menées sur d'autres plantes de service candidates. Ceci aidera, à terme, à définir les conditions environnementales à réunir, pour orienter de manière optimale les effets allélopathiques dans une perspective de nématorégulation naturelle
As part of the promotion of alternative cropping systems at lower chemical inputs, studies on the introduction of cover crops designed to reduce the use of pesticides and nitrogen fertilizers mobilize a considerable research effort. Under banana production for which the hannfu1ness caused by plant-parasitic-nematodes is one ofthe main constraints, one of the main alternatives to the use ofchemical nematicides is based on the rational use in rotation or intercropping of cover rI crops to proteet crops from plant-parasitic-nematodes, Among the candidate species, the species from the genus of Crota/aria spp. have been widely studied because of their ability to control plant parasitic-nematodes. A meta-analysis reveals that although many authors agree allelopathic properties of these species, they are also likely to recognize the high variability of expression of these properties vis-àvis the control of nematodes according to the situations experieaced.. The objective of this woIk is focnsed on the onderstanding of the biochemical determinism of mot exudates onder environment biotic and abiotic variations. The experimental strategy was 10 test onder controlled conditions the biochemical behavior of mot exudates of two species of crotalarias (C retusa, C. spectabilis) and a susceptible species, the dessert banana crop (Musa spp.) with i) modification ofbiotic conditions -ie presence or absence of nematodes iMeloidogyne arenaria and Radopho/us similis), and presence or absence of mycorrhiza-ii) contrasting abiotic conditions -ie using a natural soil vs. neutral substrate, whether to add fertilizer. The innovative methodology of "milking plants" (patent INRA) was required in order to work on the root exudates of plants packed rather thanleachate, as done in previous experiments. The results obtained show that 'visible spectrophotometry changing abiotic conditions affect significantly the biochemical profiles of the studied plants. In the presence of nematode M. arenaria biochemical profiles of both crotalarias are also changed. Bioassays conducted using mot exudates conditioned in advance by biotic changes have demonstrated the effect of nématostatique crotalarias. Biochemical Ge-MS demonstrate more clearly active molecules that are involved in varions biotic and abiotic conditions. This research, generic scope, to better understand the environmental conditions that regulate biochemical profiles of mot exudates crotalarias and by extension, will apply to research on other plants service candidates. This will ultimately define the environmental conditions to meet, to guide optimal allelopathic effects from the perspective ofnatural nématorégulation

http://www.theses.fr/2012AGUY0561/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Because earthworms sustain soil functioning and fertility, there is a need to advance the knowledge of their adaptation potential to chemicals in anthropogenic landscapes. Our hypothesis is that there is acclimation to organic chemicals (pesticides) in earthworms that durably persist under conventional farming in anthropogenic landscapes. The adaptation capability of two populations of earthworms (Aporectodea caliginosa) having a different chemical exposure history, - one originating from 20 years of organic farming (naïve population) and another from 20 years of conventional farming (pre-exposed population) - to cope with soil organic pollutant (Opus®, epoxiconazole a worldwide used fungicide) were investigated. Several complementary metabolic and energetic endpoints were followed, and cast production was assessed as a behavioural biomarker related to earthworms ecological role for the soil. Basal metabolism reflected by respiration rate was increased in both fungicide-exposed worms compared to controls. Glycogen resources were decreased in the same proportion in the two populations but more rapidly for the naïve (7 days) than for the pre-exposed population (28 days). Soluble protein and most amino-acids contents increased in the pre-exposed population only, suggesting a detoxification mechanism. Metabolomic profiles showed a cut-off between fungicide-exposed and control groups in the pre-exposed earthworms only, with an increase in most of the metabolites. Exposure to a low dose of epoxiconazole increased cast production of pre-exposed earthworms, and this resulted in an increase in pesticide disappearance. As far as we know, this is the first study which evidenced there is an acclimation to an agricultural chemical in earthworms derived from conventional farming that also relates to a change in their burrowing behaviour, and for which larger consequences for the soil ecosystem need to be addressed. This original finding is of major interest in the frame of ecosystem resilience to global changes. Whether this physiological adaptation is a general pattern of response against fungicides or other pesticides would need to be confirmed with other molecules and agricultural contexts.
Soil Biology and Biochemistry

hal-01005821
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01005821
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01005821/document
DOI : 10.1016/j.soilbio.2014.01.032

Éditeur(s) : HAL CCSD
Résumé : More than 15% of Amazon forest has been converted to pastures these last decades. Some authors argued the world’s permanent pastures (30 % of total land) could potentially offset up to 4% of the global GHG emissions, having a carbon (C) storage potential equal to 0.5 Mg C.ha-1.yr-1(Schulze et al 2009). Accordingly, pastures are good candidates to increase soil uptake C in soil while ensuring a basic food production. Here we would like to assess the effects of tropical forest conversion to cattle pasture in the French Amazonia (French Guiana), by following the long-term dynamics of soil C stocks of permanent tropical pastures (Brachiaria humidicola) after deforestation from 1970. A soil inventory campaign was performed to analyse soil C and N stocks (to 1 m depth) along a pasture chronosequence of 6 months to 36 years old pastures and 4 native forest sites (total 24 sites). The annual C sequestration potential demonstrated by the chronosequence, was compared with eddy covariance flux measurements on 2 pastures and one native forest. Our study shows that old (≥ 24 years) tropical pastures resettle the recurrent C storage observed in native forest. These pastures stored between 1.8 ± 0.5 and 5.3 ± 2.1 tC ha-1 yr-1 compared with 2.6 ± 0.5 tC ha-1 yr-1 for the nearby native forest. Our finding show that old tropical pastures accumulate carbon in soil organic matter, particularly in the deep soil layers (0.2-1 m) and without loss of soil fertility. It suggests that such pastures can be exploited by farmers in the long term with appropriate practices (no fire and no overgrazing, but a mixture of grasses and legumes and a grazing rotation plan). Clearly, efforts to curb deforestation are a priority in order to preserve forest biodiversity and C stocks. But it seems now that, in a climate-smart agriculture way, the current challenge is to manage these deforested areas to maintain the productivity of agricultural ecosystems and in the same time their capacity to mitigate GES.
Building tomorrow’s research agenda and bridging the science-policy gap
Montpellier, France

hal-01204231
https://hal.archives-ouvertes.fr/hal-01204231
PRODINRA : 324147

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
Coral spawning times have been linked to multiple environmental factors; however, to what extent these factors act as generalized cues across multiple species and large spatial scales is unknown. We used a unique dataset of coral spawning from 34 reefs in the Indian and Pacific Oceans to test if month of spawning and peak spawning month in assemblages of Acropora spp. can be predicted by sea surface temperature (SST), photosynthetically available radiation, wind speed, current speed, rainfall or sunset time. Contrary to the classic view that high mean SST initiates coral spawning, we found rapid increases in SST to be the best predictor in both cases (month of spawning: R2 = 0.73, peak: R2 = 0.62). Our findings suggest that a rapid increase in SST provides the dominant proximate cue for coral mass spawning over large geographical scales. We hypothesize that coral spawning is ultimately timed to ensure optimal fertilization success.
ISSN: 0962-8452

hal-01325704
https://hal-univ-perp.archives-ouvertes.fr/hal-01325704
DOI : 10.1098/rspb.2016.0011

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: The Ras/Raf/MEK/ERK signaling pathway is involved in essential cell processes and it is abnormally activated in similar to 30 % of cancers and cognitive disorders. Two ERK isoforms have been described, ERK1 and ERK2; ERK2 being regarded by many as essential due to the embryonic lethality of ERK2 knock-out mice, whereas mice lacking ERK1 are viable and fertile. The controversial question of why we have two ERKs and whether they have differential functions or display functional redundancy has not yet been resolved. Results: To investigate this question we used a novel approach based on comparing the evolution of ERK isoforms' sequences and protein expression across vertebrates. We gathered and cloned erk1 and erk2 coding sequences and we examined protein expression of isoforms in brain extracts in all major clades of vertebrate evolution. For the first time, we measured each isoforms' relative protein level in phylogenetically distant animals using anti-phospho antibodies targeting active ERKs. We demonstrate that squamates (lizards, snakes and geckos), despite having both genes, do not express ERK2 protein whereas other tetrapods either do not express ERK1 protein or have lost the erk1 gene. To demonstrate the unexpected squamates' lack of ERK2 expression, we targeted each ERK isoform in lizard primary fibroblasts by specific siRNA-mediated knockdown. We also found that undetectable expression of ERK2 in lizard is compensated by a greater strength of lizard's erk1 promoter. Finally, phylogenetic analysis revealed that ERK1 amino acids sequences evolve faster than ERK2' s likely due to genomic factors, including a large difference in gene size, rather than from functional differences since amino acids essential for function are kept invariant. Conclusions: ERK isoforms appeared by a single gene duplication at the onset of vertebrate evolution at least 400 Mya. Our results demonstrate that tetrapods can live by expressing either one or both ERK isoforms, supporting the notion that ERK1/2 act interchangeably. Substrate recognition sites and catalytic cleft are nearly invariant in all vertebrate ERKs further suggesting functional redundancy. We suggest that future ERK research should shift towards understanding the role and regulation of total ERK quantity, especially in light of newly described erk2 gene amplification identified in tumors.
ISSN: 1471-2148

hal-01546165
https://hal.archives-ouvertes.fr/hal-01546165
DOI : 10.1186/s12862-015-0450-x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Whole-rock concentrations of Se and Te were determined in 53 peridotite samples collected in orogenic bodies from the Eastern Pyrenees, including the Lherz massif (33 samples), the type-locality of Iherzolite. Orogenic Iherzolites tectonically emplaced into the continental crust escaped devolatilisation that may strongly alter concentrations of those volatile trace elements in basalt-hosted peridotite xenoliths. The Se and Te concentration ranges (<3.5-100.7 ppb; <1-11 ppb) are consistent with the few analyses of mantle samples yet available, yet extending to higher Se concentrations. In-situ analyses performed by LAM-ICPMS on base metal sulfides indicate that the Se budget is controlled by sulfides whereas a large fraction of Te (50 +/- 30%) does not reside in sulfides. The missing fraction is accounted for by fractional crystallization of Pt-Pd tellurides from Cu-Ni sulfide melts. A maximum of one third of the S budget of Eastern Pyrenean peridotites was added by assimilation of crustal sulfides, which crystallized as pyrite. Disregarding those contaminated samples, some features of the Se and Te systematics (e.g. bivariate plots vs. fertility index) cannot be explained by partial melting processes. The best fit for 33 peridotites (mostly from Lherz) yields higher than chondritic S/Se (3.1213 +/- 500; r(2) = 0.96) for near chondritic Se/Te (8.6 +/- 2; r(2) = 0.9). Our study suggest that such superchondritic S/Se ratios are better explained by petrogenetic processes involving refertilization of harzburgitic lithosphere by metal (Cu,Ni)-rich sulfide melts precipitated along with clinopyroxene and Al-spinel from silicate melts en-route to the surface.
ISSN: 0009-2541

hal-00544577
https://hal.archives-ouvertes.fr/hal-00544577
DOI : 10.1016/j.chemgeo.2010.09.007

Éditeur(s) : HAL CCSD
Résumé : Differentiation of the lithospheric mantle occurred principally through partial melting and extraction of melts. Harzburgites are generally considered as melting residues whereas lherzolites are regarded as pristine mantle weakly affected by melting. However, some orogenic peridotites show evidence of igneous refertilization. In this context, this work re-investigates the nature of the Lherz lherzolites (Pyrenees), type-locality of lherzolites, described as a piece of preserved fertile mantle. Structural and geochemical data show that these lherzolites are not pristine but formed through a refertilization reaction between MORB-like melts and refractory lithosphere. Moreover, the Lherz peridotites were partly used to infer the composition of the primitive upper mantle and these results may have important implications for the nature of the late veneer. Additionally, crystal-preferred orientations of minerals (CPO) highlight a strong feedback between melt percolation and finite strain in the percolated rocks. CPO variations are ruled by a subtle balance between instantaneous melt fraction and local strain rate. This work also investigated the effect of melt percolation on Hf, Nd and Sr isotopes. Isotope systematics in Lherz shows that strong isotopic decoupling may arise in a percolation front. The modelling suggests that decoupled isotopic signatures are generated during porous flow and governed by the melt/matrix elements concentrations, chemical diffusivities or efficiency of isotopic homogenization. Melt-rock interactions can generate “intraplate-like” isotopic signatures. This suggests that a part of isotopic signatures of mantle-related rocks could be generated by diffusional processes associated with melt transport.
La différenciation du manteau lithosphérique s'est principalement effectuée par fusion partielle et extraction de magmas. Les harzburgites sont généralement considérées comme des résidus de fusion tandis que les lherzolites représentent un manteau originel peu affecté par la fusion. Cependant, certaines péridotites orogéniques montrent des évidences de refertilisation magmatique. Dans ce contexte, ce travail remet en cause la nature primitive des lherzolites de Lherz (Pyrénées), lithotype de la lherzolite. Les données structurales et géochimiques montrent que ces lherzolites ne représentent pas du manteau préservé mais qu'elles se sont formées par une réaction de refertilisation entre un liquide de type MORB et une lithosphère réfractaire. De plus, les orientations préférentielles de réseau (OPR) des minéraux montrent une forte interdépendance entre la percolation magmatique et la déformation finie observée dans les roches percolées. Les variations d'OPR semblent contrôlées par un équilibre subtil entre fraction de liquide instantanée et taux de déformation local. Ce travail a également abordé les effets de la percolation magmatique sur la variabilité isotopique des roches mantelliques. Les résultats montrent qu'un fort découplage isotopique peut s'observer dans un front de percolation. Les modèles suggèrent que le découplage des signatures isotopiques se produit pendant la percolation, gouverné par le rapport des concentrations en éléments (magma/matrice), la diffusivité et le processus d'homogénéisation isotopique. Les réactions magma/roche peuvent générer des signatures isotopiques de type intraplaque. Ceci suggère qu'une part des signatures isotopiques des roches ou laves dérivées du manteau pourrait être produite par des processus diffusionnels associés à du transport de magma.
https://tel.archives-ouvertes.fr/tel-00431325

tel-00431325
https://tel.archives-ouvertes.fr/tel-00431325
https://tel.archives-ouvertes.fr/tel-00431325/document
https://tel.archives-ouvertes.fr/tel-00431325/file/theseleroux08.pdf

Éditeur(s) : HAL CCSD Society for the Study of Reproduction
Résumé : International audience
The endonuclease DICER that processes micro-RNAs and small interfering RNAs is essential for normal spermatogenesis and male fertility. We previously showed that the deletion of Dicer1 gene in postnatal spermatogonia in mice using Ngn3 promoter-driven Cre expression caused severe defects in the morphogenesis of haploid spermatid to mature spermatozoon, including problems in cell polarization and nuclear elongation. In this study, we further analyzed the same mouse model and revealed that absence of functional DICER in differentiating male germ cells induces disorganization of the cell-cell junctions in the seminiferous epithelium. We detected discontinuous and irregular apical ectoplasmic specializations between elongating spermatids and Sertoli cells. The defective anchoring of spermatids to Sertoli cells caused a premature release of spermatids into the lumen. Our findings may help also explain the abnormal elongation process of remaining spermatids because these junctions and the correct positioning of germ cells in the epithelium are critically important for the progression of spermiogenesis. Interestingly, cell adhesion-related genes were generally upregulated in Dicer1 knockout germ cells. Claudin 5 ( Cldn5 ) was among the most upregulated genes and we show that the polarized localization of CLAUDIN5 in the apical ectoplasmic specializations was lost in Dicer1 knockout spermatids. Our results suggest that DICER-dependent pathways control the formation and organization of cell-cell junctions in the seminiferous epithelium via the regulation of cell adhesion-related genes
ISSN: 0006-3363

hal-01274239
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01274239
DOI : 10.1095/biolreprod.115.131938
PUBMED : 26510868

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The Ronda orogenic peridotite (southern Spain) contains a variety of pyroxene-rich rocks ranging from high-pressure garnet granulites and pyroxenites to low-pressure plagioclasespinel websterites. The 'asthenospherized' part of the Ronda peridotite contains abundant layered websterites ('group C' pyroxenites), without significant deformation, that occur as swarms of layers showing gradual modal transitions towards their host peridotites. Previous studies have suggested that these layered pyroxenites formed by the replacement of refractory spinel peridotites. Here, we present a major- and trace-element, and numerical modelling study of a layered outcrop of group C pyroxenite near the locality of Tolox aimed at constraining the origin of these pyroxenites after host peridotites by pervasive pyroxene-producing, refertilization meltrock reactions. Mg-number [=Mg/(Mg + Fe) cationic ratio] numerical modelling shows that decreasing Mg-number with increasing pyroxene proportion, characteristic of Ronda group C pyroxenites, can be accounted for by a melt-consuming reaction resulting in the formation of mildly evolved, relatively low Mg-number melts (similar to 0.65) provided that the melt fraction during reaction and the time-integrated melt/rock ratio are high enough (>0.1 and >1, respectively) to balance Mg-Fe buffering by peridotite minerals. This implies strong melt focusing caused by melt channelling in high-porosity domains resulting from compaction processes in a partial melted lithospheric domain below a solidus isotherm represented by the Ronda peridotite recrystallization front. The chondrite-normalized rare earth element (REE) patterns of group C whole-rocks and clinopyroxenes are convex-upward. Numerical modeling of REE variations in clinopyroxene produced by a pyroxene-forming, melt-consuming reaction results in curved trajectories in the (Ce/Nd)(N) vs (Sm/Yb)(N) diagram (where N indicates chondrite normalized). Based on (Ce/Nd)(N) values, two transient, enriched domains between the light REE (LREE)-depleted composition of the initial peridotite and that of the infiltrated melt may be distinguished in the reaction column: (1) a lower domain characterized by convex-upward REE patterns similar to those observed in Ronda group C pyroxeniteperidotite; (2) an upper domain characterized by melts with strongly LREE-enriched compositions. The latter are probably volatile-rich, small-volume melt fractions residual after the refertilization reactions that generated group C pyroxenites, which migrated throughout the massifincluding the unmelted lithospheric spinel-tectonite domain. The Ronda mantle domains affected by pyroxenite- and dunite- or harzburgite-forming reactions (the 'layered granular' subdomain and 'plagioclase-tectonite' domain) are on average more fertile than the residual, 'coarse granular' subdomain at the recrystallization front. This indicates that refertilization traces the moving boundaries of receding cooling of a thinned and partially melted subcontinental lithosphere. This refertilization process may be widespread during transient thinning and melting of depleted subcontinental lithospheric mantle above upwelling asthenospheric mantle.
ISSN: 0022-3530

hal-00412200
https://hal.archives-ouvertes.fr/hal-00412200
DOI : 10.1093/petrology/egn014

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The seasonal patterns of conceptions and births differ between geographic areas. Several potential determinants of this variation have been identified, including biological, environmental and behavioral elements, but festive events are rarely mentioned. We investigated the possible association between the carnival and seasonal fertility variations in the French West Indies. We ran a retrospective registry-based study. The data were extracted from the registry of all births on Guadeloupe between 2000 and 2011 (n = 74,412), and from the Maternity Birth Register of the University Hospital, for all pregnancies of at least 14 completed weeks of gestation (observable conceptions) with an outcome recorded between 2007 and 2010 (n = 8,425). We compared data during and outside the carnival period for each year, including 2009, when there was no carnival due to a 44-day general strike. In all years other than 2009, the weekly number of births was higher for pregnancies initiated during the carnival period than for pregnancies initiated at other times, and the weekly number of observable conceptions was higher during the carnival period than at other times. Our findings support the hypothesis that carnivals in the French West Indies are associated with an increase in the number of conceptions and subsequent births.
ISSN: 1932-6203

hal-01485778
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01485778
DOI : 10.1371/journal.pone.0173102
PUBMED : 28253323

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Spinel (± plagioclase) peridotite xenoliths from the Tallante and Los Perez volcanic centres in the eastern Betics (SE Spain) range from depleted (clinopyroxene-poor) harzburgites to fertile (clinopyroxene-rich) lherzolites and orthopyroxene-free wehrlites. Significantly, only one harzburgite, which is depleted in heavy rare earth elements (HREE), retains the imprint of ca. 20% ancient melting of an original garnet lherzolite source. In contrast, REE abundances of other harzburgites and lherzolites from the eastern Betics have been increased by melt-rock reaction. The whole-rock and mineral compositions of these mantle rocks are largely controlled by three types of modal metasomatism: 1) common clinopyroxene-orthopyroxene addition and olivine consumption which increased FeOt, SiO2 and Al2O3, and decreased MgO compared to the refractory melting products; 2) subordinate orthopyroxene dissolution and precipitation of clinopyroxene and olivine, which led to higher FeOt and MgO and lower SiO2 than in common (orthopyroxene-rich) lherzolites; and 3) rare orthopyroxene consumption and olivine addition that caused higher FeOt and lower SiO2 compared to the original melting residues. These mineral modal and major element variations have been produced mostly by interactions with relatively FeOt-rich/SiO2-poor melts, likely derived from a peridotite-pyroxenite lithospheric mantle with a highly heterogeneous isotopic composition. Melting of the lithospheric mantle in the western Mediterranean was triggered by upwelling of the asthenosphere induced by back-arc extension in the Late Oligocene-Early Miocene. Trapping of small fractions of exotic melts in whole-rocks — likely the parental magmas of Miocene back-arc dykes that intruded the Betic crust — caused local disequilibrium between the trace element signatures and Pb isotopic compositions of clinopyroxene and whole-rock. Subsequent interaction with SiO2-undersaturated magmas, similar to the parental melts of the Pliocene alkali basalts that host the xenoliths, promoted orthopyroxene consumption and clinopyroxene-olivine enrichment at locations close to magma conduits, and finally generated orthopyroxene-free wehrlites. This event constitutes the last episode of the Cenozoic magmatic evolution of the westernmost Mediterranean which is recorded in the mantle xenoliths from the eastern Betics.
ISSN: 0024-4937

hal-01553092
https://hal.archives-ouvertes.fr/hal-01553092
DOI : 10.1016/j.lithos.2016.12.011

Résumé : Les réseaux de capteurs constituent un axe de recherche très fertile ces dernières années. Cette technique se développe dans différents domaines comme l'environnement, l'industrie, le commerce, la médecine, l'armée, etc. Les réseaux de capteurs sont difficiles à concevoir parce qu'ils sont fortement contraints en énergie et que tous les éléments ont potentiellement une influence sur la durée de vie du système. Nous proposons un outil permettant l'aide au bon paramétrage et aux choix de paramètres optimaux pour la stabilité des applications.Dans cette thèse, nous nous sommes intéressés à deux problématiques : une classification des paramètres pour un outil d'aide à la décision pour la configuration d'un réseau de capteurs et la seconde, un outil de test de conformité du système dans un environnement réel. Le document est divisé en deux parties où la première partie est un état de l'art de différents protocoles existants et la deuxième partie décrit notre contribution dans ces deux problématiques.Dans la première contribution, nous avons analysé l'impact de la couverture radio puis de la topologie sur les performances d'un réseau de capteurs. Nous étudions le taux de perte et le niveau d'énergie pour en déduire la stabilité d'une application. Puis nous avons proposé une étude menant à une classification pour notre outil d'aide à la décision. Notre classification est basée sur une étude de divers paramètres de la couche MAC, physique, protocole de routage, nombre de nœuds et type d'application.Dans la deuxième contribution, nous nous sommes focalisés sur une approche pragmatique permettant de tester la conformité d'un réseau de capteurs dans un environnement réel. Pour tester la conformité dans un environnement réel, nous proposons une architecture d'exécution de test sur un réseau de capteurs réel. Ceci dans un but d'assurer un niveau correct de conformité et la stabilité de celui-ci durant son fonctionnement.
Wireless sensor networks is one of the hotest research topic in the last few years. This technology can be applied for different fields such as environment, industry, trading, medicine, military etc. Wireless sensor networks are hard to conceive because they require a lot of energy and because each of its component may have an influence on the lifetime of the whole system. What we suggest is a tool allowing to choose the correct and optimal parameters for the reliability of the applications.In this thesis, we focused on two major problems : firstly, a classification of the parameters for a tool allowing to make decisions about the configuration of a wireless sensors network, and secondly, a tool testing the compliance of the system with a real environment. The document is divided into two parts : the first part states the different protocols that exist, and the second part describes our contributions to those topics.In the first contribution, we analyzed how influential the radio cover and the network topology are on the network performances. Then, we deduced from the study of the loss rate and of the level of energy, the reliability of the application. Next, we suggested a study leading to a classification for our decision making tool. For this classification, we studied various parameters related to the MAC layer, the Physical layer, the network layer, the application layer the number of nodes involved in the network.In the second contribution, we adopted a pragmatic approach so we could test the conformity of a wireless sensors network in a real environment. In order to test its conformity in a real environment, we suggested a structured test execution on a real wireless sensor network. This task has been suggested in order to check the conformance level of the network while it was working.

http://www.theses.fr/2012AGUY0586/document

Résumé : Les forêts côtières inondables (FCI) des régions tropicales et subtropicales remplissent des fonctions écologiques nécessaires aux écosystèmes marins côtiers situés en aval et aux populations humaines vivant à proximité Aux Antilles, les mangroves et les forêts marécageuses à Pterocarpus officinalis sont structurés par des espèces ligneuses qui ont développé des adaptations particulières à la salinité, à l’inondation et aux substrats meubles sur lesquels elles reposent. Dans des contextes climatiques à forte saisonnalité, les saisons sèches prolongées entraînent de fortes variations de la salinité et du niveau de la nappe, que le changement climatique devrait amplifier. Les modèles climatiques de la région Caraïbe prévoient des saisons sèches plus sèches liées à une baisse des précipitations de 20 à 50 %. Or, la question des capacités de résistance et d’acclimatation des espèces ligneuses des FCI à des variations saisonnières marquées de leur environnement édaphique a été peu traitée dans la littérature scientifique.L’objectif de ce travail de thèse a été double. Il s’est agi, d'une part, de caractériser la structure et la croissance de faciès de végétation représentatifs des FCI antillaises et de mettre en évidence leurs déterminants. A cet effet, des individus adultes, des espèces ligneuses dominantes des FCI, (Avicennia germinans, Laguncularia racemosa, Pterocarpus officinalis, Rhizophora mangle), dans cinq faciès de végétation sur le gradient terre-mer, ont été suivis sur l'île de Grande-Terre (Guadeloupe). D’autre part, les effets de variations salines extrêmes sur la croissance et l’écophysiologie de ces quatre espèces ont été évalués au stade plantule par une expérience en conditions contrôlées.A travers cette étude, il a été montré que les différences de salinité et de fertilité entre les stationspermettent d’expliquer la composition et la structure des peuplements de FCI. Cette étude a égalementmontré que P. officinalis peut se maintenir dans une gamme de salinité plus large que ne l'indiquait lalittérature.Dans le contexte des Antilles où les marnages sont faibles, la saisonnalité du climat entraine des variations saisonnières importantes d’un ensemble de descripteurs édaphiques tels que le niveau de la nappe, la salinité du sol, le pH et le potentiel RedOx. L’inondation et la salinité des sols sont fortement corrélées aux variations mensuelles des précipitations. Les périodes sèches sont accompagnées de salinités élevées et d’une baisse du niveau de la nappe allant jusqu’à l’exondation des sols dans toutes les stations suivies. Les stress environnementaux liés à la saisonnalité entrainent une baisse de la production primaire. L’accroissement cambial mensuel des individus est fortement corrélé avec les précipitations et l’intensité du vent. Dans les stations de mangrove, la sècheresse édaphique régule la production primaire des palétuviers. En forêt marécageuse, la part de la sècheresse atmosphérique semble plus importante pour expliquer la production de P. officinalis. Aussi, les sècheresses édaphique et atmosphérique doivent être prises en compte toutes deux pour modéliser efficacement la croissance des peuplements des FCI.Lors de la saison sèche, le stress le plus important est le stress hydrique, lié à la diminution de la teneur en eau du sol et à l’augmentation de la salinité, qui entraine des contraintes physiologiques sur les palétuviers (ajustements stomatiques, pertes de surface foliaire et de conductivité hydraulique). Le stress ionique, lié à la toxicité des ions Na+ et Cl-, permet aussi d’expliquer une partie de la contrainte sur l’assimilation en carbone. En saison sèche, l’aération des sols ne se traduit pas par une amélioration des performances de croissance chez toutes les espèces. Aussi, la croissance cambiale maximale de toutes les espèces de FCI est réalisée en saison des pluies lorsque la salinité est faible et les niveaux d’inondation élevés.
In tropical and subtropical regions, flooded coastal forests provide essentials goods and services to local communities. In the Antilles, mangrove forests and the Pterocarpus officinalis swamp forest host tree species that are adapted to salinity, flooding and loose substrates. In areas were climatic seasonality is strong, dry seasons lead to strong fluctuations of soil salinity and water table level ; that climate change is likely to make stronger again. Climate model for the Caribbean project drier dry seasons with a decease of 20 to 50 % in annual rainfall amounts. However, resistance and acclimation ability of flooded coastal forest’s species to strong environmental fluctuations still remain poorly studied.This thesis aims two objectives. On the one hand, it aims to characterize the forest structure and monthly growth of vegetation structures representative of the Antillean flooded coastal forests and to highlight their determinants. In this respect, adult trees of the four dominant species of local flooded coastal forest (Avicennia germinans, Laguncularia racemosa, Pterocarpus officinalis, Rhizophora mangle), in five stations along a sea – land gradient were monitored on the Grande-Terre island (Guadeloupe). On the other hand, the effects of salinity variation patterns and salinity levels on growth performances and physiology of seedlings from the four same species were investigated through a greenhouse experiment.This study shows that differences among average salinity and soil fertility explain the vegetation structure of flooded coastal forest. It also extents, in the literature, the range of salinity in which P. officinalis can stand at the tree stage.In the Antilles were tidal range is small, climate seasonality lead to strong edaphic seasonal variations in water table level, soil salinity, pH and RedOx potential. Flooding and soil salinity are strongly correlated to monthly rainfall amounts: dry periods lead to high salinity and to a decrease in water table level under the soil surface. Seasonal environmental stresses lead to a decrease of primary production. Cambial growth was strongly correlated to monthly precipitation and average wind speed. In mangrove stations, edaphic drought determines primary production of mangrove trees, when, in swamp forest stations, atmospheric drought determines an important part of P. officinalis’ primary production.During the dry season, water stress is the more important environmental stress, both by the decrease in soil humidity and the increase in soil salinity, and leads to physiological strains (stomatal adjustment, loss of leaf area and hydraulic conductivity) for mangrove trees. Ionic toxicity of ions Na+ and Cl- also explains a part of the strain on carbon assimilation. During the dry season, re oxygenation of soils via low water table level does not lead to an increase of physiological traits. Thus, maximum cambial growth of all species is observed during the rainy season, when salinity is low and water table level is high.Flooded coastal forest’s species do not have the same ability to recover after a dry episode. In all the studied stations, A. germinans’ cambial growth rises back as soon as the rainy season starts, when, for one station, cambial growth of L. racemosa and R. mangle stay null during the three first month of the rainy season. This low ability to recover after a dry episode is correlated to a stronger impact of the dry season on the physiological traits of these two species.The greenhouse experiment shows that salinity variation patterns are to be taken into consideration for explaining seedlings’ growth and salinity tolerance. A stronger salinity increase impacts the growth of all the studied species; a punctual drop of salinity highlights that flooded coastal forest’s species differ in ability to take advantage of a low salinity episode. These results are coherent with field observations as cambial growth was fairly explained by monthly precipitation.

http://www.theses.fr/2013AGUY0674/document

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Anti-Müllerian hormone (AMH) plays crucial roles in sexual differentiation and gonadal functions. However, the possible extragonadal effects of AMH on the hypothalamic-pituitary-gonadal axis remain unexplored. Here we demonstrate that a significant subset of GnRH neurons both in mice and humans express the AMH receptor, and that AMH potently activates the GnRH neuron firing in mice. Combining in vivo and in vitro experiments, we show that AMH increases GnRH-dependent LH pulsatility and secretion, supporting a central action of AMH on GnRH neurons. Increased LH pulsatility is an important pathophysiological feature in many cases of polycystic ovary syndrome (PCOS), the most common cause of female infertility, in which circulating AMH levels are also often elevated. However, the origin of this dysregulation remains unknown. Our findings raise the intriguing hypothesis that AMH-dependent regulation of GnRH release could be involved in the pathophysiology of fertility and could hold therapeutic potential for treating PCOS
ISSN: 2041-1723

hal-01259206
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01259206
DOI : 10.1038/ncomms10055
PUBMED : 26753790

Résumé : Cette these etudie les effets de la conversion de la foret tropicale en parcelles agricoles, sur les emissions de n2o par les sols. Ce travail est realise a l’echelle du cycle cultural sur le dispositif experimental de combi (littoral guyanais), a l’aide de mesures in situ et de simulations (modele noe) des flux de n2o. La foret tropicale a ete comparee a des parcelles de foret converties en terres agricoles par la methode ‘chop-and-mulch’. La methode de deforestation ‘chop-and-mulch’ associe coupe mecanique de la vegetation, broyage puis enfouissement des residus forestiers dans le sol. Les terres agricoles etaient soient des parcelles de prairie non paturee soient des parcelles cultivees (maïs fertilise/soja) conduites en semis conventionnel (semis apres travail du sol, sans plante de couverture) ou en semis direct (sans travail du sol, avec plantes de couverture).Les principaux resultats de cette etude sont : le sol de la foret tropicale de combi est un faible emetteur de n2o ; la conversion par la methode ‘chop-and-mulch’ de cette foret en prairie ne conduit pas a une augmentation significative des emissions de n2o entre le 19eme et le 31eme mois suivant la conversion ; la conversion de la foret en parcelles cultivees induit une augmentation significative des emissions de n2o due a la fertilisation et a la modification des parametres edaphiques (densite apparente, temperature, humidite volumique) ; la technique sans travail du sol n’engendre pas de flux de n2o significativement plus eleves que la technique avec travail du sol ; l’introduction du phenomene d’hysterese hydrique dans le modele noe presente un reel potentiel pour l’estimation des emissions de n2o in situ.
This study investigates the effects of the conversion of tropical forest to cultivation on soil n2o emissions. The study was carried out over a complete crop cycle at the experimental site combi (french guianese coast). Nitrous oxide fluxes were obtained in the field and by conducting simulations with the noe model. Undisturbed tropical rainforest was compared to rainforest that had been converted to agricultural land using the ‘chop-and-mulch’ method. The ‘chop-and-mulch’ method is a fire-free method used for vegetation clearing combining the mechanical felling of trees with the mulching of small vegetation. Agricultural land included either mowed grassland or soybean/fertilised maize crop rotation. For croplands the two cultivation practices employed were: conventional seeding (using an offset disc harrow, without cover plants) or direct seeding (no till, with cover plants).The main results of this study are: rainforest soil at combi produced low n2o emissions; rainforest converted to mowed grassland using the 'chop-and-mulch’ method did not lead to a significant increase in n2o emissions between the 19th and 31st months after conversion; the conversion of rainforest to croplands induced a significant increase in soil n2o emissions due to the application of fertiliser and the modification of soil parameters (bulk density, temperature, volumetric moisture); n2o emissions from agricultural practices with no-till were no higher than those produced by conventional agricultural practices using an offset disc harrow; and, the introduction of an hydric hysteresis into the noe model constitutes a promising improvement to estimate in situ n2o emissions.

http://www.theses.fr/2013AGUY0610/document

Éditeur(s) : HAL CCSD Wiley
Résumé : Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia.
ISSN: 1461-023X

hal-01531751
https://hal.archives-ouvertes.fr/hal-01531751
DOI : 10.1111/ele.12661
PRODINRA : 387284

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. We used data for >34 000 trees from several permanent plots in French Guiana to investigate if soil characteristics could predict the structure (tree diameter, density and aboveground biomass), and dynamics (growth, mortality, aboveground wood productivity) of nutrient-poor tropical forests. Most variables did not covary with site-level changes in soil nutrient content, indicating that nutrient-cycling mechanisms other than the direct absorption from soil (e.g. the nutrient uptake from litter, the resorption, or the storage of nutrients in the biomass), may strongly control forest structure and dynamics. Ecosystem-level adaptations to low soil nutrient availability and long-term low levels of disturbance may help to account for the lower productivity and higher accumulation of biomass in nutrient-poor forests compared to nutrient-richer forests.
ISSN: 2045-2322

hal-01606170
https://hal.archives-ouvertes.fr/hal-01606170
DOI : 10.1038/srep45017
PRODINRA : 389876

Éditeur(s) : HAL CCSD
Résumé : International audience
The Chromosome-Centric Human Proteome Project (C-HPP) aims to identify "missing" proteins in the neXtProt knowledgebase. We present an in-depth proteomics analysis of the human sperm proteome to identify testis-enriched missing proteins. Using protein extraction procedures and LC-MS/MS analysis, we detected 235 proteins (PE2-PE4) for which no previous evidence of protein expression was annotated. Through LC-MS/MS and LC-PRM analysis, data mining, and immunohistochemistry, we confirmed the expression of 206 missing proteins (PE2-PE4) in line with current HPP guidelines (version 2.0). Parallel reaction monitoring acquisition and sythetic heavy labeled peptides targeted 36 ≪one-hit wonder≫ candidates selected based on prior peptide spectrum match assessment. 24 were validated with additional predicted and specifically targeted peptides. Evidence was found for 16 more missing proteins using immunohistochemistry on human testis sections. The expression pattern for some of these proteins was specific to the testis, and they could possibly be valuable markers with fertility assessment applications. Strong evidence was also found of four "uncertain" proteins (PE5); their status should be re-examined. We show how using a range of sample preparation techniques combined with MS-based analysis, expert knowledge, and complementary antibody-based techniques can produce data of interest to the community. All MS/MS data are available via ProteomeXchange under identifier PXD003947. In addition to contributing to the C-HPP, we hope these data will stimulate continued exploration of the sperm proteome. © 2016 American Chemical Society.
Journal of Proteome Research

hal-01406074
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01406074
DOI : 10.1021/acs.jproteome.6b00400
PUBMED : 27444420