Éditeur(s) : HAL CCSD School of Communications and Informatics
Résumé : International audience
The hybrid proximal point algorithm introduced by Solodov and Svaiter allowing significant relaxation of the tolerance requirements imposed on the solution of proximal subproblems will be combined with the inertial method introduced by Alvarez and Attouch which incorporates second order information to achieve faster convergence. The weak convergence of the resulting method will be investigated for finding zeroes of a maximal monotone operator in a Hilbert space.
ISSN: 1443-5756

hal-00780745
https://hal.univ-antilles.fr/hal-00780745
https://hal.univ-antilles.fr/hal-00780745/document
https://hal.univ-antilles.fr/hal-00780745/file/170_03_www.pdf

Éditeur(s) : Colloque IMBC - International Marine Biotechnology Conference
Résumé : Since 1997, a new pathology seasonally occurs in new caledonian shrimp farms during the warm season. Diseased Litopenaeus stylirostris shrimp suffer from a systemic vibriosis which was attributed to highly pathogenic Vibrio nigripulchritudo. At the present time, only two farms among 17 are affected by the so called "summer syndrome". In such a context it appears urgent to develop reliable diagnostic tools to detect V. nigripulchritudo strains and to differentiate highly virulent strains from non virulent ones in order to understand the mechanisms of infection and overcome disease spreading. Multilocus Sequencing Typing (MLST) analysis on 24 bacterial strains isolated in geographically distinct shrimp farms highlighted the existence of a cluster A containing only strains displaying moderate to high virulence. Since experimental infection procedure for virulence status determination is material intensive and time consuming, and MLST method not accurate enough to inform on the virulence status of strains, it appeared of great interest to develop other diagnostic tools. Two phylogenetically closed strains, one highly virulent SFn1 and the other non-virulent SFn118 were selected in order to characterize genes specific of the virulent strain by Substractive Suppression Hybridization (SSH). Firstly, a total of 622 DNA fragments specific of SFn1 were sequenced, characterized and further used as probes in a DNA macroarray. Testing 24 strains, hybridization profiles were found to be strongly correlated with both MLST genotypes and bacterial virulence status. A total of 96 representative probes were secondly selected to validate macroarray results on 34 more additionnal strains, allowing identification of genetic markers of virulence. Most of DNA fragments specific of highly virulent strains associated to summer syndrome were found to be bore by a plasmid successfully isolated in the laboratory. In next future, these results would permit the development of relevant diagnostic tools useful for accurate epidemiological survey of the summer syndrome.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/acte-3398.pdf
http://archimer.ifremer.fr/doc/00000/3398/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
This study describes the structure of the digestive gland of Strombus gigas in individuals from Guadeloupe and discusses the function of its cell types and their relationship with intracellular Apicomplexa-like parasites. Three cellular types were found in the epithelium of the blind-ending tubules of the digestive gland according to histological and transmission electron microscopy (TEM) observations; these were: digestive cells, pyramidal crypt cells and vacuolated cells. Columnar digestive cells were characterized by large Alcian blue-positive granules, which have not been previously described in digestive cells of other caenogastropods. Such granules contain large quantities of proteoglycans that are exported to the stomach through the physiological destruction of the digestive cells, which undergo a holocrine secretion. Their cytoplasm appears vacuolar due to lipid extraction by solvents used for tissue preparation. Vacuolated cells also appear to be lipid-storage cells. Small triangular-shaped crypt cells, on the other hand, appear to be metabolically active as suggested by a strong positive in situ hybridization of eukaryotic ribosomes, which was confirmed by their large content of ribosomes and rough endoplasmic reticulum compared to the other cell types. These observations suggest that crypt cells may be immature cells that are involved in the replacement of eliminated digestive cells. However, their spherocrystal inclusions indicate that they may be excretory cells or calcium cells. Large brown inclusions were frequently observed in vacuolated cells; these were identified as parasitic protozoans and were present in the digestive gland of all sampled specimens. These protozoans have previously been described from a queen conch population in the San Andres Archipelago (Colombia). Several life cycle stages of the parasite were identified by scanning electron microscopy and TEM; trophozoites were characterized by their conoid-like structure, sporocysts by their thick walls, and gamonts by their thin walls. These observations suggest that this parasite completes its entire life cycle within the same host and type of tissue. Although previous investigations place this parasite within the Apicomplexa group, further investigations are necessary in order to confirm the identification of the parasite.
ISSN: 0260-1230

hal-00755287
https://hal.univ-antilles.fr/hal-00755287
DOI : 10.1093/mollus/eyn041

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper deals with the study of the kinematic dimension of scribbling activities executed by kindergarten children aged from 3 to 6 years old from three grades. For this purpose, three sigma-lognormal features, six classical ones and one hybrid feature related to visuo-motor skills are extracted from scribbles realized using five different Type Grib. The statistical analysis of these data illustrates that sigma-lognormal modeling can satisfactorily reconstruct kindergarten children’s scribbles. Moreover, this preliminary study confirms that there are significant differences between grades with respect to six of the features we studied, regardless of the nature of the scribbling movement made by children. These features are related to rapidity, fluidity and precision of linear and curvilinear movements used for scribbling tasks.
17th Biennial Conference of the International Graphonomics Society
Pointe-à-Pitre, Guadeloupe

hal-01165910
https://hal.univ-antilles.fr/hal-01165910
https://hal.univ-antilles.fr/hal-01165910/document
https://hal.univ-antilles.fr/hal-01165910/file/IGS_2015_submission_28.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this study, we report the cloning of three transcripts for leptin receptor in the European sea bass, a marine teleost of economic interest. The two shortest variants, generated by different splice sites, encode all functional extracellular and intracellular domains but missed the transmembrane domain. The resulting proteins are therefore potential soluble binding proteins for leptin. The longest transcript (3605 bp), termed sblepr, includes all the essential domains for binding and transduction of the signal. Thus, it is proposed as the ortholog for the human LEPR gene, the main responsible for leptin signalling. Phylogenetic analysis shows the sblepr clustered within the teleost leptin receptor group in 100% of the bootstrap replicates. The neuroanatomical localization of sblepr expressing cells has been assessed by in situ hybridization in brains of sea bass of both sexes during their first sexual maturation. At histological level, the distribution pattern of sblepr expressing cells in the brain shows no clear differences regarding sex or reproductive season. Transcripts of the sblepr have a widespread distribution throughout the forebrain and midbrain until the caudal portion of the hypothalamus. A high hybridization signal is detected in the telencephalon, preoptic area, medial basal and caudal hypothalamus and in the pituitary gland. In a more caudal region, sblepr expressing cells are identified in the longitudinal torus. The expression pattern observed for sblepr suggests that in sea bass, leptin is very likely to be involved in the control of food intake, energy reserves and reproduction
ISSN: 0016-6480

hal-01290500
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500/file/Leptin%20receptor%20gene%20in%20the%20European%20sea%20bass%20postprint.pdf
DOI : 10.1016/j.ygcen.2016.03.017

Éditeur(s) : Actes du 6e colloque national BRG, La Rochelle, 2-3-4 octobre 2006
Résumé : Previous studies have shown heritable variation in larval developmental traits in the Pacific oyster Crassostrea gigas. In order to study the genetic consequences of production of oyster larvae in hatcheries, two factors, specific to hatcheries, were examined: the effect of discarding the smallest larvae (i.e. culling) and the effect of temperature (20°C versus 26°C). A mixed-family approach was used in order to infer the genetic composition of larval populations and family assignment, limiting possible environmental bias and allowing the study of a relatively large number of families using a limited number of larval tanks. Our results show that three multiplexed highly polymorphic microsatellite markers are a powerful tool for family assignment and, consequently, for the study of bivalve larvae genetics. Culling, by selective sieving of the smallest larvae is an advantageous practice at a phenotypic scale as it reduced variance in larval size, variance of developmental rate and time to settlement. Culling of 50% of the larval population only led to 15% less spat, showing a positive phenotypic correlation between larval growth and settlement success. However, culling represents a substantial risk for diversity loss, because it increases the variance of reproductive success among parental oysters. The effective population sizes of early settling cohorts of settlement were lower than those of later ones. Our results show that the settlement of slow growing larvae significantly contributes to minimizing the variability of reproductive success and therefore to maximizing genetic diversity. These results corroborate the low estimations of variability of broodstocks sampled in several French commercial hatcheries, relative to natural populations. The genetic composition of the larval population and the resulting spat was significantly different between the two tested temperatures, revealing genotype x environment interaction for survival. Similarly, genotype x environment interaction was also observed for larval growth as a higher temperature exerted a positive influence on the expression of genetic variability for this trait. Consequently, we can conclude that a temperature of 26°C coupled with culling, to common practice in oyster hatcheries, is likely to amplify the selection pressure for fast growing larvae. To test for this hypothesis, we compared larval developmental traits in the progeny of a hatchery broodstock closed for 7 generations, with the progeny of wild oysters and the two possible hybrids. Our results show that selection of fast growing larvae can counteract presumed inbreeding depression, due to higher mean relatedness among hatchery broodstock than in the wild. Genetic effects of intensive rearing conditions at larval stage are significant and should be taken into account in hatchery practices, especially in terms of genetic diversity management.
Afin d'étudier les conséquences génétiques des pratiques de production en écloserie d'huître creuse, deux facteurs ont été examinés : l'élimination des petites larves et la température. Nos résultats montrent que l'assignation de parenté par marqueurs microsatellites est un outil performant pour les études génétiques en phase larvaire de familles élevées en mélange. Bien qu'avantageux d'un point de vue phénotypique, le tamisage sélectif représente un risque de perte de diversité. La fixation des larves à croissance lente permet en effet de minimiser la variabilité du succès reproducteur et de fait, de maximiser la variabilité génétique. Ces résultats corroborent les estimations de variabilité sur les stocks d'écloseries françaises où l'on constate une diversité allélique inférieure à celle de populations issues du milieu naturel. La température exerce également une influence sur la précocité de l'expression de la variabilité génétique pour la croissance larvaire. Ainsi une température élevée associée à une procédure de tamisage peut amplifier l'effet sélectif. Enfin, la sélection de larves à croissance rapide semble démontrée, s'opposant à la dépression de consanguinité présumée. Les conditions d'élevage peuvent donc avoir un effet génétique significatif qui devrait être pris en considération dans les pratiques d'écloserie, notamment dans la gestion de la diversité génétique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/acte-1505.pdf
http://archimer.ifremer.fr/doc/00000/1505/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Ghrelin is a gut-brain peptide hormone, which binds to the growth hormone secretagogue receptor (GHS-R) to regulate a wide variety of biological processes in fish. Despite these prominent physiological roles, no studies have reported the anatomical distribution of preproghrelin transcripts using in situ hybridization in a non-mammalian vertebrate, and its mapping within the different encephalic areas remains unknown. Similarly, no information is available on the possible 24-h variations in the expression of preproghrelin and its receptor in any vertebrate species. The first aim of this study was to investigate the anatomical distribution of ghrelin and GHS-R1a ghrelin receptor subtype in brain and gastrointestinal tract of goldfish (Carassius auratus) using immunohistochemistry and in situ hybridization. Our second aim was to characterize possible daily variations of preproghrelin and ghs-r1 mRNA expression in central and peripheral tissues using real-time reverse transcription-quantitative PCR. Results show ghrelin expression and immunoreactivity in the gastrointestinal tract, with the most abundant signal observed in the mucosal epithelium. These are in agreement with previous findings on mucosal cells as the primary synthesizing site of ghrelin in goldfish. Ghrelin receptor was observed mainly in the hypothalamus with low expression in telencephalon, pineal and cerebellum, and in the same gastrointestinal areas as ghrelin. Daily rhythms in mRNA expression were found for preproghrelin and ghs-r1 in hypothalamus and pituitary with the acrophase occurring at nighttime. Preproghrelin, but not ghs-r1a, displayed a similar daily expression rhythm in the gastrointestinal tract with an amplitude 3-fold higher than the rest of tissues. Together, these results described for the first time in fish the mapping of preproghrelin and ghrelin receptor ghs-r1a in brain and gastrointestinal tract of goldfish, and provide the first evidence for a daily regulation of both genes expression in such locations, suggesting a possible connection between the ghrelinergic and circadian systems in teleosts
ISSN: 1932-6203

hal-01225511
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01225511
DOI : 10.1371/journal.pone.0141043
PUBMED : 26506093

Éditeur(s) : HAL CCSD
Résumé : International audience
(definition, qualities social and/or world) as technological media of the innovation, we shall wonder about the stakes and the impacts of these in the alternative strategies of collective intelligence, as community stand.This brings us to invest more profoundly the community innovation in sustainable development, by a concrete ground : association of ecocitizenship of the Bay of Arcachon., Ecocitizens of the Bay of Arcachon, the association integrated into the CEBA, the Coordination Environment Association of the Bay of Arcachon wich account 29 associations of environnemental protection on the Bay of Arcachon. Our subject is to show from the appropriation of ICTS and new modes of existence of the technical objects that the social innovation is born and diversifies in a intercultural way from complex hybridizations between economic concerns, relations with public authorities and social utility. Does not this define a new imagination of the innovation and the change where the individual via the groups has a renewed responsibility and which sometimes is to be re-qualified ?
Dans cet article, après un état des lectures sur les réseaux, base de notre cadre méthodologique (définition, type, qualités sociaux et/ou mondiaux) en tant que supports technologiques de l’innovation, nous nous interrogerons sur les enjeux et les impacts de ceux-ci dans les stratégies alternatives d’intelligence collective, en tant que prise de position communautaire. Ceci nous amène à investir plus profondément l’innovation communautaire en développement durable, par un terrain concret : association d’écocitoyenneté du Bassin d’Arcachon, Ecocitoyens du Bassin d’Arcachon, association intégrée à la CEBA l’Association Coordination Environnement du Bassin d’Arcachon qui compte 29 associations de protection de l’environnement sur le Bassin d’Arcachon Notre propos est de montrer à partir de l’appropriation des TIC et de nouveaux modes d’existence des objets techniques que l’innovation sociale naît et se diversifie de façon interculturelle à partir d’hybridations complexes entre préoccupations économiques, relations avec les pouvoirs publics et utilité sociale.Ceci ne définit-il pas un nouvel imaginaire de l’innovation et du changement où l’individu via les groupes a une responsabilité renouvelée et qui est parfois à requalifier ?
Les écosystèmes numériques et la démocratisation informationnelle : Intelligence collective, Développement durable, Interculturalité, Transfert de connaissances
Schoelcher, France

hal-01258348
https://hal.univ-antilles.fr/hal-01258348
https://hal.univ-antilles.fr/hal-01258348/document
https://hal.univ-antilles.fr/hal-01258348/file/Catherine%20PASCAL.pdf

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The cyp19a1 gene that encodes aromatase, the only enzyme permitting conversion of C19 aromatizable androgens into estrogens, is present as a single copy in the genome of most vertebrate species, except in teleosts in which it has been duplicated. This study aimed at investigating the brain expression of a cyp19a1 gene expressed in both gonad and brain of Japanese eel, a basal teleost. By means of immunohistochemistry and in situ hybridization, we show that cyp19a1 is expressed only in radial glial cells of the brain and in pituitary cells. Treatments with salmon pituitary homogenates (female) or human chorionic gonadotrophin (male), known to turn on steroid production in immature eels, strongly stimulated cyp19a1 messenger and protein expression in radial glial cells and pituitary cells. Using double staining studies, we also showed that aromatase-expressing radial glial cells exhibit proliferative activity in both the brain and the pituitary. Altogether, these data indicate that brain and pituitary expression of Japanese eel cyp19a1 exhibits characteristics similar to those reported for the brain specific cyp19a1b gene in teleosts having duplicated cyp19a1 genes. This supports the hypothesis that, despite the fact that eels also underwent the teleost specific genome duplication, they have a single cyp19a1 expressed in both brain and gonad. Such data also suggest that the intriguing features of brain aromatase expression in teleost fishes were not gained after the whole genome duplication and may reflect properties of the cyp19a1 gene of ancestral Actinopterygians.
ISSN: 1932-6203

hal-00877375
https://hal.archives-ouvertes.fr/hal-00877375
https://hal.archives-ouvertes.fr/hal-00877375/document
https://hal.archives-ouvertes.fr/hal-00877375/file/Expressionsur Aromatase-accepted.pdf
DOI : 10.1371/journal.pone.0044750

Éditeur(s) : Elsevier
Résumé : Vibrio tapetis is the marine bacterium responsible for the brown ring disease (BRD) affecting die manila clam, Ruditapes philippinarum. Identification of V tapelis has been previously performed using biochemical criteria and serological procedures. All of these methods are time consuming and ill-adapted to individual screening. This study describes an oligonucleotidic probe (Vt446) and two PCR primers, deduced from the 16S rDNA sequence, allowing a fast and specific V tapetis identification using dot blot hybridisation and species-specific primed PCR (SSP-PCR). The probe and primers have been tested on 60 strains, including referenced Vibrio sp., Gram negative and positive bacteria, marine bacteria samples and isolated clam bacteria. For all the 19 V tapetis strains, the results of PCR assays consistently corroborated those of the agglutination tests. The detection limit was estimated to be 10(2) CFU ml(-1). The SSP-PCR method has resulted in V tapetis detection in larvae, m diseased clams, and in asymptomatic broodstock clams that later developed BRD. In conclusion, the two SSP-PCR primers were useful for direct and fast identification of V tapetis strains isolated in clams, and are well suited for the screening of individual R. philippilnarum broodstock clams and larvae from the hatchery. (C) 2005 Elsevier B.V. All rights reserved.
Aquaculture (0044-8486) (Elsevier), 2006-03 , Vol. 253 , N. 1-4 , P. 25-38

Droits : 2005 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2006/publication-1692.pdf
DOI:10.1016/j.aquaculture.2005.03.047
http://archimer.ifremer.fr/doc/00000/1692/

Éditeur(s) : HAL CCSD
Résumé : International audience
One of the most common tasks in the area of social network mining is the extraction of frequent patterns from social networks. Although traditional approaches have been mainly focused on subgraphs occurring frequently in a network or a set of networks, new approaches have attempted to exploit network structure and node properties in order to elicit new kinds of patterns. One of these news approaches is the extraction of conceptual links, a solution that combines both structure and node properties for providing knowledge on the groups of nodes the most connected in a social network. However, if the extraction of conceptual links offers a great potential in terms of knowledge discovery as well as network visualization, the search for these kinds of patterns remains a computationally intensive problem. Thus, the efficiency of the extraction processes highly depends on the efficiency of the underlying algorithm. In this paper, we focus on the extraction of maximal frequent conceptual links (MFCL) and we propose a hybrid algorithm that applies a filter on the nodes for reducing the search space to the most frequent groups of nodes. Although our solution potentially causes loss of some patterns, we demonstrate its efficiency by comparison with the MFCLMin algorithm. We investigate the potential loss of patterns, the gain on the runtime, and the gain on the number of comparisons.
IEEE International Conference on Research Challenges in Information Science
Paris, France

hal-00841699
https://hal.archives-ouvertes.fr/hal-00841699

Éditeur(s) : Elsevier
Résumé : In a previous study, we demonstrated the existence of an emerging cluster of Vibrio nigripulchritudo that proved to be associated with shrimp mortality events in New Caledonia. Using sequence polymorphisms evidenced in this previous MultiLocus Sequence Typing study, we developed two new quantitative PCR assays permitting the detection and quantification of V. nigripulchritudo at the genospecies level using SYBR Green I chemistry and at the emerging cluster level using Fluorescence Resonance Energy Transfer technology with hybridization probes. The use of this molecular diagnostic tool evidenced the colonization of the shrimp pond ecosystem by the pathogenic cluster at least at the onset of the disease. This new tool will allow better investigation of the dynamics of this bacterial pathogen in the shrimp farm ecosystem. (C) 2007 Elsevier B.V. All rights reserved.
Journal of Microbiological Methods (0167-7012) (Elsevier), 2007-07 , Vol. 70 , N. 1 , P. 30-38

Droits : 2007 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2007/publication-2729.pdf
DOI:10.1016/j.mimet.2007.03.007
http://archimer.ifremer.fr/doc/00000/2729/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
This study demonstrates that 20-100 GHz range can be used for spatially-accurate focusing of heating inside the skin achieved by varying frequency and exposure beam size, as well as by enforcing air convection. The latter is also used to reduce overheating of skin surface. Heating at different skin depths depending on these parameters is investigated in detail using the hybrid bio-heat equation. In particular, it is shown that decreasing frequency and/or increasing exposure beam size at forced airflow result in elevation of heating of deeper layers of tissue and decrease of skin surface temperature. Changes of water content within 15%, which exceed those due to aging and presence of tumors, only slightly affect heating. Exposure intensity necessary to reach a target temperature significantly increases in different areas of body with elevated blood flow. Dependence on exposure intensity and hyperthermia treatment duration is also investigated and discussed. Results of this study suggest that the lower part of the millimeter-wave range is an attractive alternative for non-invasive thermal treatment of skin cancer with a high spatial resolution. Bioelectromagnetics. 36:464-475, 2015. © 2015 Wiley Periodicals, Inc
ISSN: 0197-8462

hal-01187403
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187403
DOI : 10.1002/bem.21929
PUBMED : 26179286

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Two of the crucial aspects of human immunodeficiency virus (HIV) infection are (i) viral persistence in reservoirs (precluding viral eradication) and (ii) chronic inflammation (directly associated with all-cause morbidities in antiretroviral therapy (ART)-controlled HIV-infected patients). The objective of the present study was to assess the potential involvement of adipose tissue in these two aspects. Adipose tissue is composed of adipocytes and the stromal vascular fraction (SVF); the latter comprises immune cells such as CD4+ T cells and macrophages (both of which are important target cells for HIV). The inflammatory potential of adipose tissue has been extensively described in the context of obesity. During HIV infection, the inflammatory profile of adipose tissue has been revealed by the occurrence of lipodystrophies (primarily related to ART). Data on the impact of HIV on the SVF (especially in individuals not receiving ART) are scarce. We first analyzed the impact of simian immunodeficiency virus (SIV) infection on abdominal subcutaneous and visceral adipose tissues in SIVmac251 infected macaques and found that both adipocytes and adipose tissue immune cells were affected. The adipocyte density was elevated, and adipose tissue immune cells presented enhanced immune activation and/or inflammatory profiles. We detected cell-associated SIV DNA and RNA in the SVF and in sorted CD4+ T cells and macrophages from adipose tissue. We demonstrated that SVF cells (including CD4+ T cells) are infected in ART-controlled HIV-infected patients. Importantly, the production of HIV RNA was detected by in situ hybridization, and after the in vitro reactivation of sorted CD4+ T cells from adipose tissue. We thus identified adipose tissue as a crucial cofactor in both viral persistence and chronic immune activation/inflammation during HIV infection. These observations open up new therapeutic strategies for limiting the size of the viral reservoir and decreasing low-grade chronic inflammation via the modulation of adipose tissue-related pathways
ISSN: 1553-7366

Droits : http://creativecommons.org/licenses/by/
hal-01207287
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01207287
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01207287/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01207287/file/journal.ppat.1005153.pdf
DOI : 10.1371/journal.ppat.1005153

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
The functional organization of the circadian system and the location of the main circadian oscillators vary through phylogeny. Present study investigates by in situ hybridization the anatomical location of the clock gene gPer1b in forebrain and midbrain, pituitary, and in two peripheral locations, the anterior intestine and liver, in a teleost fish, the goldfish (Carassius auratus). Moreover, the daily expression profiles of this gene were also studied by quantitative Real Time-PCR. Goldfish were maintained under a 12L–12D photoperiod and fed daily at 2 h after lights were switched on. A wide distribution of gPer1b mRNA in goldfish brain and pituitary was found in telencephalon, some hypothalamic nuclei (including the homologous to mammalian SCN), habenular nucleus, optic tectum, cerebellum and torus longitudinalis. Moreover, gPer1b expression was observed, for the first time in teleosts, in the pituitary, liver and anterior intestine. Day/night differences in gper1b mRNA abundance were found by in situ hybridization, with higher signal at nighttime that correlates with the results obtained by RT-PCR, where a rhythmic gPer1b expression was found in all tissues with acrophases at the end of the night. Amplitudes of gper1b rhythms vary among tissues, being higher in liver and intestine than in the brain, maybe because different cues entrain clocks in these locations. These results support the existence of functional clocks in many central and peripheral locations in goldfish coordinated, ticking at the same time
ISSN: 0742-0528

hal-01197353
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01197353
DOI : 10.3109/07420528.2015.1049615
PUBMED : 26171989

Résumé : Une bibliographie sur les études et les travaux d’aquiculture en eaux salées (1880-1972) a été réalisée par Monsieur Pierre PORCHE, chargé de recherches à l'ISTPM, durant l'année 1972. C'est un répertoire de références bibliographiques groupées sous 23 rubriques et donnant une documentation de base sur le sujet. A l'intérieur de chaque chapitre , le classement est fait par ordre alphabétique du nom d'auteur; Le plan de cette bibliographique est le suivant : 1. Etudes générales et régionales d' aquaculture en eaux salées 2. Cultures des Algues 3. Elevage des Ciliés, Flagellés, Cténophores et Rotifères 4. Elevage des Spongiaires 5. Elevage des Echinodermes 6. Elevage des Annélides 7. Elevage des Mollusques 8. Elevage des Crustacés 9. Elevage des Poissons 10. Elevage des Reptiles 11. Transplantations d’animaux et de végétaux 12. Dispositifs d'élevage en laboratoire 13. Récifs artificiels 14. Choix et aménagement des sites favorables à l'aquaculture en eaux salées 15. Alimentation artificielle 16. Reproduction artificielle 17. Génétique, hybridation, sélection artificielle 18. Contrôle des facteurs physiques, chimiques et biologiques des milieux de culture et mesures de la productivité 19. Contrôle des compétiteurs et des prédateurs 20. Parasistisme 21. Maladies 22. Effets des pollutions 23. Rassemblement et récolte des animaux d'élevage La mise à jour est faite pour la partie "généralités", soit: Etudes générales et régionales d'aquaculture en eaux salées.

Droits : 1974 ISTPM
http://archimer.ifremer.fr/doc/00060/17095/14612.pdf
http://archimer.ifremer.fr/doc/00060/17095/

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
This article is concerned with a generalization of the hybrid steepest descent method from variational inequalities to the multivalued case. This will be reached by replacing the multivalued operator by its Yosida approximate, which is always Lipschitz continuous. It is worth mentioning that the hybrid steepest descent method is an algorithmic solution to variational inequality problems over the fixed point set of certain nonexpansive mappings and has remarkable applicability to the constrained nonlinear inverse problems like image recovery and MIMO communication systems
ISSN: 0163-0563

hal-00776641
https://hal.univ-antilles.fr/hal-00776641
DOI : 10.1080/01630563.2011.619676

Éditeur(s) : HAL CCSD L'Harmattan
Résumé : International audience
The pétanque is used here as a field to interrogate two aspects. Firstly, in a global context, how a cultural practice is modified. In Pondicherry, south of India, how this physical activity, which appeared after the French colonization, is integrated in indianization process? Secondly, that practice show us the links and exchanges that took part between French national of Tamil-Indian origin and Tamils-Indians people? One of the main questions is to understand how the postcolonial context influences their relations? Through the analysis of semi-directives interviews and the observation of the game pétanque for two years, this work shows how this activity represents a syncretism space in which cultural exchanges are realized. The pétanque appears as spaces where the different individuals with their cultural background are engaged in a symbolic compete. This global situation does not produce uniformity but cultural hybridization. Taking place in specific postcolonial context, the practice of pétanque allows expressing different socio-cultural identities between individuals of French and Indian nationality.
La pétanque est ici utilisée comme un terrain d’étude pour interroger deux aspects. D’une part, dans un contexte mondialisé, la manière dont se transforme une pratique culturellement située. Dans le contexte indien de Pondichéry, de quelle façon cette pratique « sportive » parvenue après la colonisation, mais par l’intermédiaire de celle-ci, se trouve-t-elle prise dans un processus d’indigénisation ? D’autre part, quels rapports s’établissent entre les individus qui la pratiquent, à la fois Français d’origine tamoule et Indiens tamouls ? Surtout, comment le contexte postcolonial dans lequel s’inscrivent leurs identités et leurs pratiques pèse-t-il sur ces rapports ? À partir de l’analyse d’interviews semi-directifs d’acteurs et de l’observation de la pratique de la pétanque à Pondichéry durant deux années, cet article montre comment cette activité représente un espace syncrétique dans lequel se formalisent des échanges culturels. La pétanque apparaît ainsi comme un espace de mise en concurrence symbolique des individus représentant des espaces nationaux culturellement différents. Loin de produire des formes d’uniformité, la mondialisation produit ici des hybridations culturelles. Inscrite dans un contexte postcolonial spécifique, la pétanque donne lieu à l’expression de registres socioculturels divers dans les échanges entre individus de nationalité française et indienne.
ISSN: 1165-0354

hal-01681876
https://hal.archives-ouvertes.fr/hal-01681876

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Cold seeps have recently been discovered in the Nile deep-sea fan (Eastern Mediterranean), and data regarding associated fauna are still scarce. In this study, two bivalve species associated with carbonate crusts and reduced sediment are identified based on sequence analysis of their 18S and 28S rRNAencoding genes, and associated bacterial symbioses are investigated using 16S rRNA gene sequencing and microscopy-based approaches. The specimens are closely related to Myrtea spinifera and Thyasira flexuosa, two species previously documented at various depths from other regions but not yet reported from the Eastern Mediterranean. Both species harbour abundant gammaproteobacterial endosymbionts in specialized gill epithelial cells. The Myrtea-associated bacterium is closely related to lucinid symbionts from both deep-sea and coastal species, whereas the Thyasira-associated bacterium is closely related to the symbiont of a T. flexuosa from coastal waters off the U.K. An epsilonproteobacterial sequence has also been identified in Thyasira which could correspond to a helicoid-shaped morphotype observed by electron microscopy, but this was not confirmed using fluorescent in situ hybridization. Virus-like particles were observed within some symbionts in Thyasira, mostly in bacteriocytes localized close to the ciliated zone of the gill filament. Overall, results indicate that very close relatives of shallow species M. spinifera and T. flexuosa occur at cold seeps in the Eastern Mediterranean and harbour chemoautotrophic symbioses similar to those found in their coastal relatives.
ISSN: 0173-9565

hal-00743765
https://hal.univ-antilles.fr/hal-00743765
DOI : 10.1111/j.1439-0485.2010.00413.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In French Guiana, severe cases of toxoplasmosis in immunocompetent patients are associated with atypical strains of Toxoplasma gondii linked to a wild neotropical rainforest cycle and a higher genetic diversity than usually observed for T. gondii isolates from anthropized environment. This raises the question of the impact of anthropization of the natural environment, on genetic diversity and on the population structure of T. gondii. However, few data are available on strains circulating in the anthropized areas from French Guiana. Seropositive animals originating mainly from anthropized sub-urban areas and punctually from wild environment in French Guiana were analyzed for T. gondii isolation and genotyping. Thirty-three strains were obtained by bioassay in mice and compared with 18 previously reported isolates chiefly originating from the Amazon rainforest. The genotyping analysis performed with 15 microsatellite markers located on 12 different chromosomes revealed a lower genetic diversity in the anthropized environment. Results were analyzed in terms of population structure by clustering methods, Neighbor-joining trees reconstruction based on genetic distances, F(ST,) Mantel's tests and linkage disequilibrium. They clearly showed a genetic differentiation between strains associated to the anthropized environment and those associated to the wild, but with some inbreeding between them. The majority of strains from the anthropized environment were clustered into additional lineages of T. gondii that are common in the Caribbean. In conclusion the two environmental populations "wild" and "anthropized" were genetically well differentiated. The anthropization of the environment seems to be accompanied with a decreased diversity of T. gondii associated with a greater structure of the populations. We detected potential interpenetration and genetic exchanges between these two environmental populations. As a higher pathogenicity in human of "wild" genotypes has been described, the interpenetration of both environments leads to hybridization between strains that may be at risk for human health.
ISSN: 1567-1348

pasteur-00654105
https://hal-riip.archives-ouvertes.fr/pasteur-00654105
https://hal-riip.archives-ouvertes.fr/pasteur-00654105/document
https://hal-riip.archives-ouvertes.fr/pasteur-00654105/file/Mercier_et_al_IGE2011.pdf
DOI : 10.1016/j.meegid.2011.05.003