Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Elsevier
Résumé : This paper is the first presentation of a project called GHYRAF (Gravity and Hydrology in Africa) devoted to the detailed comparison between models and multidisciplinary observations (ground and satellite gravity, geodesy, hydrology, meteorology) of the variations of water storage in Africa from the Sahara and part to the monsoon equatorial part. We describe the various actions planned in this project. We first detail the actions planned in gravimetry which consist in two main surface gravity experiments: on the one hand the periodic repetition of absolute gravity measurements along a north-south monsoonal gradient of rainfall in West Africa, going from Tamanrasset (20 mm/year) in southern Algeria to Djougou (1200 mm/year) in central Benin; on the other hand the continuous measurements at Djougou (Benin) with a superconducting gravimeter to monitor with a higher sampling rate the gravity changes related to an extreme hydrological cycle. Another section describes the actions planned in GPS which will maintain and develop the present-day existing network in West Africa. The third type of actions deals with hydrology and we review the three sites that will be investigated in this joint hydrogeophysics project namely Wankama (near Niamey) and Bagara (near Diffa) in the Niger Sahelian zone and Nalohou (near Djougou) in the Benin monsoon zone. We also address the question of the ground truth of satellite-derived missions: in this context the GHYRAF project will lead to test the hydrology models by comparison both with in situ and satellite data such as GRACE, as well as to an important increase of our knowledge of the seasonal water cycle in Africa. We finally present preliminary results in GPS based on the analysis of the vertical motion of the Djougou site. The resulting absolute gravity changes related to the 2008 monsoon are finally given.
ISSN: 0264-3707

hal-00475660
https://hal.archives-ouvertes.fr/hal-00475660
DOI : 10.1016/j.jog.2009.09.014

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
In this study we attempt to understand the water storage variations in a karst aquifer on the Larzac Plateau (South of France) using ground-based gravimetry. Surface to 60 m depth gravity measurements are performed three times a year since 2006 down a pothole, in complement to monthly absolute gravity (AG) measurements at three sites. The time variations of the surface to depth (STD) gravity differences are compared with the AG variations. Using a simple Bouguer plate model, we find that the STD gravity differences are very similar to the AG variations. The STD gravity differences are then used to determine apparent density values. These integrative density values are compared with measured grain densities from core samples to obtain an apparent porosity and saturation change representative of the investigated depth. The apparent porosity ranges from 4.8 to 7.3 per cent. We then discuss on the repartition of the apparent physical properties with respect to the epikarst and infiltration zone karst structures. We argue that AG and STD differences monitor epikarst water storage variations. Within this scope, we discuss the fact that seasonal scale water storage variation occurs predominantly in the epikarst.
ISSN: 0956-540X

hal-00413528
https://hal.archives-ouvertes.fr/hal-00413528
DOI : 10.1111/j.1365-246X.2009.04118.x

Éditeur(s) : HAL CCSD
Résumé : International audience
New inclinometers devoted to hydrological studies were set up in the Vosges Mountains (France). Two orthogonal 100-meter base hydrostatic inclinometers were installed in December 2004 as well as a hydrometeorological monitoring system for the 100-km² hydrological unit around the inclinometer. As inclinometers are very sensitive to environmental influences, this observatory is a test site to confront hydrological modelling and geodetic observations. Physical modelling to remove hydrological effects without calibrating on geodetic data is tested on these instruments. Specifically, two deformation processes are most important: fluid pressure variations in nearby hydraulically active fractures and surface loading at regional scale.
International Association of Geodesy Symposia
Perugia, Italy

hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442/document
https://hal.archives-ouvertes.fr/hal-00710442/file/2007IUGG_proceedingsIAG.pdf
DOI : 10.1007/978-3-540-85426-5_63

Éditeur(s) : HAL CCSD Elsevier
Résumé : TAG LITHO
In this study we attempt to understand the water storage variations in a karst aquifer on the Larzac Plateau (South of France) using absolute gravimetry. On this karst system, water input is exclusively rainfall and draining occurs at the Durzon perennial spring in a karstic valley. Our basis assumption is that water storage in the vadose zone (epikarst and infiltration zone) has a significant effect on surface gravity through Newtonian attraction. The karst aquifer is hence being monitored since January 2006 with monthly absolute gravity measurements at three sites. The gravity measurements are corrected for regional scale gravity using water storage models in order to obtain gravity variations related exclusively to the local water storage variations. The gravity variations exhibit an important seasonal component (10-15 mu gal corresponding to a variation of equivalent water stab thickness of similar to 24-36 cm). Water storage variation seen by gravimetry is not spatially uniform on the studied karst system, corroborating current geomorphologic observations and interpretations. Finally, we use a global mass balance consideration linking rainfall, evapotranspiration and spring discharge to provide a conceptual framework for the understanding of observed gravity variations.
ISSN: 0022-1694

hal-00411884
https://hal.archives-ouvertes.fr/hal-00411884
DOI : 10.1016/j.jhydrol.2008.06.020