Éditeur(s) : HAL CCSD
Résumé : International audience
High-mass-resolution imaging mass spectrometry promises to localize hundreds of metabolites in tissues, cell cultures, and agar plates with cellular resolution, but it is hampered by the lack of bioinformatics tools for automated metabolite identification. We report pySM, a framework for false discovery rate (FDR)-controlled metabolite annotation at the level of the molecular sum formula, for high-mass-resolution imaging mass spectrometry (https://github.com/alexandrovteam/pySM). We introduce a metabolite-signal match score and a target-decoy FDR estimate for spatial metabolomics. © 2017 Nature America, Inc., part of Springer Nature. All rights reserved.
Nature Methods

hal-01467553
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467553
DOI : 10.1038/nmeth.4072
PUBMED : 27842059

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
IODP Site U1309 was drilled at Atlantis Massif, an oceanic core complex, at 30 degrees N on the Mid-Atlantic Ridge (MAR). We present the results of a bulk rock geochemical study (major and trace elements) carried out on 228 samples representative of the different lithologies sampled at this location. Over 96% of Hole U1309D is made up of gabbroic rocks. Diabases and basalts cross-cut the upper part of the section; they have depleted MORB compositions similar to basalts sampled at MAR 30 degrees N. Relics of mantle were recovered at shallow depth. Mantle peridotites show petrographic and geochemical evidence of extensive melt-rock interactions. Gabbroic rocks comprise: olivine-rich troctolites (>70% modal olivine) and troctolites having high Mg# (82-89), high Ni (up to 2300 ppm) and depleted trace element compositions (Yb 0.06-0.8 ppm); olivine gabbros and gabbros (including gabbronorites) with Mg# of 60-86 and low trace element contents (Yb 0.125-2.5 ppm); and oxide gabbros and leucocratic dykes with low Mg# (<50), low Ni (similar to 65 ppm) and high trace element contents (Yb up to 26 ppm). Troctolites and gabbros are amongst the most primitive and depleted oceanic gabbroic rocks. The main geochemical characteristics of Site U1309 gabbroic rocks are consistent with a formation as a cumulate sequence after a common parental MORB melt, although (lack of systematic) downhole variations indicate that the gabbroic series were built by multiple magma injections. In detail, textural and geochemical variations in olivine-rich troctolites and gabbronorites suggest chemical interaction (assimilation?) between the parental melt and the intruded lithosphere. Site U1309 gabbroic rocks do not represent the complementary magmatic product of 30 degrees N volcanics, although they sample the same mantle source. The bulk trace element composition of Site U1309 gabbroic rocks is similar to primitive MORB melt compositions; this implies that there was no large scale removal of melts from this gabbro section. The occurrence of such a large magmatic sequence implies that a high magmatic activity is associated with the formation of Atlantis Massif. Our results suggest that almost all melts feeding this magmatic system stays trapped into the intruded lithosphere.
ISSN: 0012-821X

hal-00413562
https://hal.archives-ouvertes.fr/hal-00413562
DOI : 10.1016/j.epsl.2008.12.034

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
ISSN: 1431-9276

hal-00411439
https://hal.archives-ouvertes.fr/hal-00411439

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The detailed morphology and internal structure of the Calabrian accretionary wedge and adjacent Eastern Sicily margin are imaged in unprecedented detail by a combined dataset of multi-beam bathymetry and high-resolution seismic profiles. The bathymetric data represent the results of 6 recent marine geophysical surveys since 2010 as well as a compilation of earlier surveys presented as a 2 arc-sec (60 m) grid. Several distinct morpho-tectonic provinces are identified including: the deeply incised Malta–Hyblean Escarpment, numerous submarine canyons, broad regions of relatively flat seafloor dominated by fields of sediment waves, the gently undulating anticlinal fold-and-thrust belts of the external Calabrian accretionary wedge and the adjacent portion of the Western Mediterranean Ridge. The Calabrian arc can be divided into 4 domains (from SE to NW): 1) the undeformed Ionian abyssal plain, 2) the external evaporitic wedge, 3) the internal clastic wedge, 4) the Calabrian backstop (Variscan crystalline basement). The Calabrian accretionary wedge can also be divided laterally into two major lobes, the NE- and the SW lobes, and two minor lobes. The kinematics of the limit between the two major lobes is investigated and shown to be sinistral in the external (evaporitic) wedge. A network of radial slip lines within the southernmost external wedge unequivocally demonstrate ongoing dextral displacement of a rigid indenter (representing the corner of the clastic wedge) into the evaporitic wedge thereby confirming the geodynamic model of an active lateral slab tear fault here off eastern Sicily. The slab tear produces a series of major sub-parallel dextral strike-slip faults offshore Mt. Etna and south of the Straits of Messina consistent with the relative motions between Calabria and the Peloritan domain (NE Sicily). Abundant strike-slip faulting, and wide-spread folding and thrusting observed throughout the entire accretionary wedge, indicate regional shortening between the Ionian abyssal plain (foreland) and the Calabrian–Peloritan backstop caused by active subduction.
ISSN: 0012-821X

hal-01523990
https://hal.archives-ouvertes.fr/hal-01523990
DOI : 10.1016/j.epsl.2016.12.020

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
A calibration method aimed at converting X-ray intensities into absolute units has been tested in different electron microprobes. The calibration requires measurement of the X-ray peak profile and measurement and calculation of the bremsstrahlung intensity emitted from a reference sample, at the energy of the X-ray line of interest. Specifically, measurements of the U M alpha and M beta lines emitted from UO2 and bremsstrahlung intensities emitted from an Al reference sample have been performed on five different instruments. The aim of the work is to determine to what accuracy X-ray intensities emitted from reference samples of actinide elements are transferable among different electron microprobes (virtual standard). The influence of the focussing geometry and different crystals and proportional counters used is analysed. Strategies to reduce the uncertainties affecting the absolute calibration of the studied lines are discussed.
ISSN: 0026-3672

hal-00411437
https://hal.archives-ouvertes.fr/hal-00411437
DOI : 10.1007/s00604-007-0856-2