Éditeur(s) : HAL CCSD
Résumé : International audience
Field trip Guidebook, CorseAlp 2011 Meeting of Geology

hal-00604006
https://hal.archives-ouvertes.fr/hal-00604006

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The volume comprises some of the contributions presented during the 10th edition of the Alpine Meeting "CorseAlp 2011". It has been held in Saint Florent (Corsica) between 10th and 16th of April 2011 under the auspices of Societé Geologique de France, Società Geologica Italiana and the INGV (Istituto Nazionale di Geofisica e Vulcanologia) and with the collaboration of colleagues of Université de Corse (M.-M. Spella, M. and J. Ferrandini and L. Ciancaleoni) and the support of the city council of S. Florent. The meeting was framed in the series of "Alpine Workshops" e.g., Siegesmund et al. (2008), Handy and Rosenberg (2011), which are held every two years to develop interdisciplinary research on Alpine-type orogens. It hosted a variety of topical sessions from regional geology to process-oriented field and laboratory studies and gave the opportunity to collect multidisciplinary and multiscale approaches to geodynamic studies including continental rifting and ocean opening, oceanic and continental subduction, late- to post orogenic extension, exhumation of deep seated rocks, back-arc opening and microcontinent rotation, interfering orogenic-scale tectonics and surface processes, tectonics and seismic hazard within the Alpine chain and Mediterranean realms.
ISSN: 0040-1951

hal-00795580
https://hal.archives-ouvertes.fr/hal-00795580

Éditeur(s) : HAL CCSD
Résumé : International audience
Kisspeptins are well known as mediators of the coordinated communication between the brain-pituitary axis and the gonads in many vertebrates. To test the hypothesis that gonadal steroids regulate kiss1 and kiss2 mRNA expression in European sea bass (a teleost fish), we examined the brains of gonad-intact (control) and castrated animals, as well as castrated males (GDX) and ovariectomized females (OVX) that received testosterone (T) and estradiol (E2) replacement, respectively, during recrudescence. In GDX males, low expression of kiss1 mRNA is observed by in situ hybridization in the caudal hypothalamus (CH) and the mediobasal hypothalamus (MBH), although hypothalamic changes in kiss1 mRNA levels were not statistically different among the groups, as revealed by real-Time PCR. However, T strongly decreased kiss2 expression levels in the hypothalamus, which was documented in the MBH and the nucleus of the lateral recess (NRLd) in GDX T-Treated sea bass males. Conversely, it appears that E2 evokes lowkiss1mRNAin the CH, while there were cells expressing kiss2 in the MBH and NRLd in these OVX females. These results demonstrate that kisspeptin neurons are presumably sensitive to the feedback actions of sex steroids in the sea bass, suggesting that the MBH represents a major site for sex steroid actions on kisspeptins in this species. Also, recent data provide evidence that both positive and negative actions occur in key factors involved in sea bass reproductive function, including changes in the expression of gnrh-1/gonadotropin, cyp19b, er and ar genes and sex steroid and gonadotropin plasma levels in this teleost fish. © 2016. Published by The Company of Biologists Ltd.
Journal of Experimental Biology

hal-01406072
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01406072
DOI : 10.1242/jeb.137364
PUBMED : 27591305

Éditeur(s) : HAL CCSD Geological Society
Résumé : International audience
Deformation mechanisms, long-term kinematics and evolution of fold and thrust belts subjected to erosion are studied through 2D analogue experiments involving large convergence. First-order parameters tested include (1) décollements and/or plastic layers interbedded at different locations within analogue materials and (2) synconvergence surface erosion. Weak layers, depending on their location in the model, favour deformation partitioning characterized by the simultaneous development of underplating domains in the inner part of the wedge (basal accretion) and frontal accretion where the wedge grows forward. Interaction between tectonics and surface processes influences this behaviour. Development of antiformal thrust stacks controlled by underplating shows small- and large-scale cyclicity. Thin plastic layers induce folding processes, which are studied at wedge scale. Recumbent and overturned folds, with large inverted limbs, develop in a shear-induced asymmetric deformation regime via progressive unrolling of synclinal hinges. Surface erosion and underplating at depth induce further rotation (passive tilting) and horizontalization of fold limbs. Model results give insights to discuss the mechanisms responsible for the large-scale structures (i.e. antiformal nappe stacks, klippen and kilometre-scale recumbent fold-nappes) encountered in several mountain belts such as the Montagne Noire (French Massif Central), the Galicia Variscan belt (Spain) and the northern Apennines (Italy).
ISSN: 0016-7649

hal-00937644
https://hal.archives-ouvertes.fr/hal-00937644
DOI : 10.1144/jgs2013-012

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Addressing data quality issues in information systems remains a challenging task. Many approaches only tackle this issue at the extract, transform and load steps. Here we define a comprehensive method to gain greater insight into data quality characteristics within data warehouse. Our novel architecture was implemented for an hydroecological case study where massive French watercourse sampling data are collected. The method models and makes effective use of spatial, thematic and temporal accuracy, consistency and completeness for multidimensional data in order to offer analysts a “data quality” oriented framework. The results obtained in experiments carried out on the Saône River dataset demonstrated the relevance of our approach
ISSN: 0098-3004

hal-01223918
https://hal.archives-ouvertes.fr/hal-01223918
https://hal.archives-ouvertes.fr/hal-01223918/document
https://hal.archives-ouvertes.fr/hal-01223918/file/final-cogeo.pdf
DOI : 10.1016/j.cageo.2015.09.012

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Orogenic wedges locally present chaotic tectonostratigraphic units that contain exotic blocks of various size, origin, age and lithology, embedded in a sedimentary matrix. The occurrence of ophiolitic blocks, sometimes huge, in such “mélanges” raises questions on (i) the mechanisms responsible for the incorporation of oceanic basement rocks into an accretionary wedge and (ii) the mechanisms allowing exhumation and redeposition of these exotic elements in “mélanges” during wedge growth.To address these questions, we present the results of a series of analogue experiments performed to characterize the processes and parameters responsible for accretion, exhumation and tectonosedimentary reworking of oceanic basement lithospheric fragments in an accretionary wedge.The experimental setup is designed to simulate the interaction between tectonics, erosion and sedimentation. Different configurations are applied to study the impact of various parameters, such as irregular oceanic floor due to structural inheritance, or the presence of layers with contrasted rheology that can affect deformation partitioning in the wedge (frontal accretion vs basal accretion) influencing its growth. Image correlation technique allows extracting instantaneous velocity field, and tracking of passive particles. By retrieving the particle paths determined from models, the pressure-temperature path of mélange units or elementary blocks can be discussed. The experimental results are then compared with observations from ophiolite-bearing mélanges in Taiwan (Lichi and Kenting mélanges) and Raman spectroscopy of carbonaceous material (RSCM) Thermometry data on rocks from the northern Apennines (Casanova mélange). A geological scenario is proposed following basic observations. The tectonic evolution of the retroside of doubly vergent accretionary wedges is mainly controlled by backthrusting and backfolding. The retro wedge is characterized by steep slopes that are prone to gravitational instabilities. It triggers submarine landslides inducing huge mass transfers. This erosion combined with backthrusting could favour exhumation of the ophiolitic fragments formerly accreted at the base of the wedge along the rough seafloor-sediments interface. Such an exhumed material can be reworked and deposited as debris- flows in proximal basins located at the foot of the retrowedge slope forming a tectono-sedimentary mélange. These syntectonic basins are continuously deformed and involved in prograding backthrusting-induced deformation.
ISSN: 0264-3707

hal-01395127
https://hal.archives-ouvertes.fr/hal-01395127
DOI : 10.1016/j.jog.2016.05.008

Éditeur(s) : HAL CCSD
Rendiconti della Societa Geologica Italianna, Nuova Serie

hal-00411132
https://hal.archives-ouvertes.fr/hal-00411132

Éditeur(s) : HAL CCSD
Résumé : International audience
Background Orodental diseases include several clinically and genetically heterogeneous disorders that can present in isolation or as part of a genetic syndrome. Due to the vast number of genes implicated in these disorders, establishing a molecular diagnosis can be challenging. We aimed to develop a targeted next-generation sequencing (NGS) assay to diagnose mutations and potentially identify novel genes mutated in this group of disorders. Methods We designed an NGS gene panel that targets 585 known and candidate genes in orodental disease. We screened a cohort of 101 unrelated patients without a molecular diagnosis referred to the Reference Centre for Oro-Dental Manifestations of Rare Diseases, Strasbourg, France, for a variety of orodental disorders including isolated and syndromic amelogenesis imperfecta (AI), isolated and syndromic selective tooth agenesis (STHAG), isolated and syndromic dentinogenesis imperfecta, isolated dentin dysplasia, otodental dysplasia and primary failure of tooth eruption. Results We discovered 21 novel pathogenic variants and identified the causative mutation in 39 unrelated patients in known genes (overall diagnostic rate: 39%). Among the largest subcohorts of patients with isolated AI (50 unrelated patients) and isolated STHAG (21 unrelated patients), we had a definitive diagnosis in 14 (27%) and 15 cases (71%), respectively. Surprisingly, COL17A1 mutations accounted for the majority of autosomal-dominant AI cases. Conclusions We have developed a novel targeted NGS assay for the efficient molecular diagnosis of a wide variety of orodental diseases. Furthermore, our panel will contribute to better understanding the contribution of these genes to orodental disease. Trial registration numbers NCT01746121 and NCT02397824
Journal of Medical Genetics

hal-01272929
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01272929
DOI : 10.1136/jmedgenet-2015-103302
PUBMED : 26502894

Éditeur(s) : HAL CCSD
Résumé : CorseAlp 2011 was held in April 2011. A link to the website is here: CorseAlp 2011. The CorseAlp field trips were designed to introduce the participants to the general features of the geology of Alpine Corsica and to recent specific discoveries. Field trip 1 focused on the geology of the Ocean-Continent Transition preserved in the Monte San Petrone, in Central Corsica, which was subducted to eclogite facies conditions during the Alpine orogeny. Field Guide 1 itinerary: Bastia, Golo Valley, Piedicroce, M.S.Petrone and S.Florent.
Journal of the Virtual Explorer

hal-00689755
https://hal.archives-ouvertes.fr/hal-00689755

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : We report the northernmost and deepest known occurrence of deep-water pycnodontine oysters based on two surveys along the French Atlantic continental margin to the La Chapelle continental slope (2006) and the Guilvinec Canyon (2008) The combined use of multibeam bathymetry seismic profiling CTD casts and a remotely operated vehicle (ROV) made it possible to describe the physical habitat and to assess the oceanographic control for the recently described species Neopycnodonte zibrowii These oysters have been observed in vivo in depths from 540 to 846 m colonizing overhanging banks or escarpments protruding from steep canyon flanks Especially in the Bay of Biscay such physical habitats may only be observed within canyons where they are created by both long-term turbiditic and contouritic processes Frequent observations of sand ripples on the seabed indicate the presence of a steady but enhanced bottom current of about 40 cm/s The occurrence of oysters also coincides with the Interface between the Eastern North Atlantic Water and the Mediterranean Outflow Water A combination of this water mass mixing internal tide generation and a strong primary surface productivity may generate an enhanced nutrient flux which is funnelled through the canyon When the ideal environmental conditions are met up to 100 individuals per m(2) may be observed These deep-water oysters require a vertical habitat which is often incompatible with the requirements of other sessile organisms and are only sparsely distributed along the continental margins The discovery of these giant oyster banks illustrates the rich biodiversity of deep-sea canyons and their underestimation as true ecosystem hotspots (C) 2010 Elsevier Ltd All rights reserved
Deep-sea Research Part I-oceanographic Research Papers (0967-0637) (Pergamon-elsevier Science Ltd), 2010-12 , Vol. 57 , N. 12 , P. 1561-1572

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00023/13419/14034.pdf
DOI:10.1016/j.dsr.2010.09.002
http://archimer.ifremer.fr/doc/00023/13419/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Alpine Corsica consists of a stack of variably metamorphosed units of continental and Tethys-derived rocks. It represents an excellent example of high-pressure (HP) orogenic belt, such as the Western Alps, exposed over a small and accessible area. Compared to the Western Alps, the geology of Alpine Corsica is poorly unraveled. During the 1970s-80s, based on either lithostratigraphic or metamorphic field observations, various classifications of the belt have been proposed, but these classifications have been rarely matched together. Furthermore, through time, the internal complexity of large domains has been progressively left aside in the frame of large-scale geodynamic reconstructions. As a consequence, major open questions on the internal structure of the belt have remained unsolved. Apart from a few local studies, Alpine Corsica has not benefited of modern developments in petrology and basin research. This feature results in several uncertainties when combining lithostratigraphic and metamorphic patterns and, consequently, in the definition of an exhaustive architecture of the belt. In this paper we provide a review on the geology of Alpine Corsica, paying particular attention to the available lithostratigraphic and metamorphic classifications of the metamorphic terranes. These data are completed by a new and exhaustive metamorphic dataset obtained by means of thermometry based on Raman Spectroscopy of Carbonaceous Material (RSCM). This technique provides reliable insights on the peak temperature of the metamorphic history for CM-bearing metasediments. A detailed metamorphic characterization of metasediments, which have been previously largely ignored due to retrogression or to the lack of diagnostic mineralogy, is thus obtained and fruitfully coupled with the available lithostratigraphic data. Nine main tectono-metamorphic units are defined, from subgreenschist (ca. 280-300 °C) to the lawsonite-eclogite-facies (ca. 500-550 °C) condition. These units are homogeneous in metamorphism, laterally continuous and have characteristic lithostratigraphic features. This study also suggests a direct link between the pre-orogenic extensional setting and the present-day compressional structure of Alpine Corsica, indicating that large sections of subducted lithosphere were subducted and exhumed as coherent domains. These features provide important insight on the mechanism of stacking and exhumation of HP rocks, and make Alpine Corsica a unique reference for mountain-building processes in Tethyan-type orogens.
ISSN: 0012-8252

hal-00814433
https://hal.archives-ouvertes.fr/hal-00814433
DOI : 10.1016/j.earscirev.2012.10.003

Éditeur(s) : HAL CCSD
Résumé : CorseAlp 2011 was held in April 2011. A link to the website is here: CorseAlp 2011. The CorseAlp field trips were designed to introduce the participants to the general features of the geology of Alpine Corsica and to recent specific discoveries. The three-day post-workshop field trip (Field trip 2) focused on the general architecture of Alpine Corsica in an EW transect between the Balagne region and Bastia. First day: The internal zones of Alpine Corsica: from Bastia to Saint Florent. Intinerary: Saint Florent, Serra di Pigno, Cima Malaspina, Patrimonio, Saint Florent. Second day: The Tenda massif and its eastern margin. Intinerary: Saint Florent, Casta, Fontana Porragghia, Rue de Morello, Fontana a Murello quarry; Fornali. Third day: The external zones of Alpine Corsica in the Balagne region. Intineray: Saint Florent, Colle di U'Vezzu, Ostriconi, Belgodere, San Sebastiano Chapel, San Colombano, Ponte Leccia, Francardo, Bastia.
Journal of the Virtual Explorer

hal-00688971
https://hal.archives-ouvertes.fr/hal-00688971

Éditeur(s) : HAL CCSD
Résumé : Corsica is located in the Mediterranean sea, about 90 km from the Italian coast of Tuscany and 175 km from the French Riviera. This relatively large island stretches for 180 km in the north-south direction and 85 Km east-west. The rugged landscape, with a mean elevation of ca. 500 m and the highest point at 2710 m (Monte Cinto) is interrupted only by a major plain along the east coast. CorseAlp 2011 was held in April 2011. A link to the website is here: CorseAlp 2011. The CorseAlp field trips were designed to introduce the participants to the general features of the geology of Alpine Corsica and to recent specific discoveries. Field trip 1 focused on the geology of the Ocean-Continent Transition preserved in the Monte San Petrone, in Central Corsica, which was subducted to eclogite facies conditions during the Alpine orogeny. The three days post-workshop field trip (Field trip 2) focused on the general architecture of Alpine Corsica in an EW transect between the Balagne region and Bastia. The main topics of Field trip 1 and 2 allow discussion about the overall evolution of Alpine Corsica in the framework of Mediterranean geodynamics, with a focus on the most controversial aspects.
Journal of the Virtual Explorer

hal-00688965
https://hal.archives-ouvertes.fr/hal-00688965

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The Alps/Apennines system, as well as many collisional orogens through the world, shows a finite deformation produced during a long geological history which involves numerous superimposed tectonic events. As a result, complex and often contrasted reconstructions for the setting and tectonics of the different stages of the growing and interfering Alps/Apennines system have been proposed. To enlight some of the geometric and kinematic signatures related to past geodynamics in the composite Alps(Corsica)/Apennines system, we analyse the major deformation processes, their superimposition, and resulting finite structural geometries in the currently growing Taiwan orogenic system. The Taiwan island and its offshore northward and southward prolongations represent the emerged and the sub-marine parts of an orogenic wedge related to the interactions between the Eurasian and the Philippine Sea and recording different subduction settings. Using the Taiwan actualistic geodynamic scenarios and the related first-order geometric-kinematic constraints, we will attempt a reconstruction of the tectonic evolution for the Corsica/Apennines orogenic system foregrounding the key role of continental subduction and subduction reversal during such evolution.
ISSN: 1437-3254

hal-00617149
https://hal.archives-ouvertes.fr/hal-00617149
DOI : 10.1007/s00531-010-0598-y