Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé :  
In this paper, we report a study of the mating system and gene flow of Symphonia globulifera, a hermaphroditic, mainly bird-pollinated tree species with a large geographic distribution in the tropical Americas and Africa.Using three microsatellites, we analysed 534 seeds of 28 open pollinated families and 164 adults at the experimental site 'Paracou' in French Guiana. We observed, compared to other tropical tree species, relatively high values for the effective number of alleles. Significant spatial genetic structure was detected, with trees at distances up to 150 m more genetically similar than expected at random. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGener approach. The estimated multilocus outcrossing rate, tm, was 0.920. A significant level of biparental inbreeding and a high proportion of full-sibs were estimated for the 28 seed arrays. We estimated mean pollen dispersal distances between 27 and 53 m according to the dispersal models used. Although the adult population density of S. globulifera in Paracou was relatively high, the joint estimation of pollen dispersal and density of reproductive trees gave effective density estimates of 1.6 and 1.3trees/ha. The parameters of the mating system and gene flow are discussed in the context of spatial genetic and demographic structures, flowering phenology and pollinator composition and behaviour.
ISSN: 0018-067X

hal-01032178
https://hal.archives-ouvertes.fr/hal-01032178
DOI : 10.1038/sj.hdy.6800560

Éditeur(s) : HAL CCSD Embrapa Amazônia Oriental
Résumé :  
absent
Modelling and experimental research on genetic processes in tropical and temperate forests [proceedings]
Kourou, Guyane, France

hal-01032061
https://hal.archives-ouvertes.fr/hal-01032061

Éditeur(s) : HAL CCSD
Résumé :  
For a comprehensive evaluation of human influences on the genetic system, the simulation model EGO-GENE was developed. The model combines population genetic and population dynamic processes with forest growth models. The dynamics of genetic structures (single locus and multilocus genotypes up to 200 loci) can be simulated. Spatial and temporal genetic dynamics are included in the model. Overlapping or separated generations can be created and different modes of mating systems can be implemented. The model can be run with empirical and fictitious input data. The simulated genetic structures can be directly analysed with established genetic analysis programmes. An example demonstrates the use of the model far validation of interactions among components of the mating system. Another example demonstrates the applicability of the model in decision-making for seed sampling strategies. The genetic differences between the adult trees and the harvested seeds and the danger of genetic drift regarding to different seed sampling strategies are investigated by use of the genetic distance and the reproductively effective population size.
Silvae genetica

hal-01032083
https://hal.archives-ouvertes.fr/hal-01032083

Éditeur(s) : HAL CCSD
Résumé : Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
absent
https://hal.archives-ouvertes.fr/hal-01189541

hal-01189541
https://hal.archives-ouvertes.fr/hal-01189541
PRODINRA : 46419

Éditeur(s) : HAL CCSD Springer Verlag
Résumé :  
Quantitative genetic diversity is a fundamental component of the interaction between natural populations and their environment. In breeding programmes, quantitative genetic studies on tropical trees have so far focused on fast-growing, light-demanding species, but no information exists on shade-tolerant, slow-growing species. For this study, 27 3-year-old open-pollinated families of the Neotropical shade-tolerant rainforest tree Sextonia rubra were measured in semicontrolled conditions for 20 morphological, growth, and photosynthesis traits; the effect of genetic relatedness, habitat of provenance, and mother tree status on seedling traits was analysed. Nine traits displayed significant genetic effects, while mother tree status and habitat effects were not significant (P>0.05) for an y trait. Estimated heritability varied between 0.14 and 0.28, with growth-related traits having the highest values. Additive genetic variation correlated positively with nonheritable variation, suggesting that ecological-evolutionary factors increasing or decreasing additive genetic variance may also affect nonheritable variation in the same direction. Our results suggest that quantitative genetic variability should be taken into account in ecological studies on, and in the management of, natural tropical rainforests; further research is needed to investigate genetic × environment interactions, in particular from the point of view of the genetic response of shade-tolerant plant species to variations in light availability.
ISSN: 1614-2942

hal-01032145
https://hal.archives-ouvertes.fr/hal-01032145
DOI : 10.1007/s11295-009-0251-8

Éditeur(s) : HAL CCSD Wiley
Résumé : The extent of gene dispersal is a fundamental factor of the population and evolutionary dynamics of tropical tree species, but directly monitoring seed and pollen movement is a difficult task. However, indirect estimates of historical gene dispersal can be obtained from the fine-scale spatial genetic structure of populations at drift-dispersal equilibrium. Using an approach that is based on the slope of the regression of pairwise kinship coefficients on spatial distance and estimates of the effective population density, we compare indirect gene dispersal estimates of sympatric populations of 10 tropical tree species. We re-analysed 26 data sets consisting of mapped allozyme, SSR (simple sequence repeat), RAPD (random amplified polymorphic DNA) or AFLP (amplified fragment length polymorphism) genotypes from two rainforest sites in French Guiana. Gene dispersal estimates were obtained for at least one marker in each species, although the estimation procedure failed under insufficient marker polymorphism, limited sample size, or inappropriate sampling area. Estimates generally suffered low precision and were affected by assumptions regarding the effective population density. Averaging estimates over data sets, the extent of gene dispersal ranged from 150 m to 1200 m according to species. Smaller gene dispersal estimates were obtained in species with heavy diaspores, which are presumably not well dispersed, and in populations with high local adult density. We suggest that limited seed dispersal could indirectly limit effective pollen dispersal by creating higher local tree densities, thereby increasing the positive correlation between pollen and seed dispersal distances. We discuss the potential and limitations of our indirect estimation procedure and suggest guidelines for future studies
ISSN: 0962-1083

hal-01031603
https://hal.archives-ouvertes.fr/hal-01031603
DOI : 10.1111/j.1365-294X.2005.02785.x

Éditeur(s) : HAL CCSD Embrapa Amazônia Oriental
Résumé :  
absent
Modelling and experimental research on genetic processes in tropical and temperate forests
Kourou, Guyane, France

ISBN : 85-87690-14-0
hal-01189193
https://hal.archives-ouvertes.fr/hal-01189193
PRODINRA : 13321

Éditeur(s) : HAL CCSD Embrapa Amazônia Oriental
Résumé :  
absent
Modelling and experimental research on genetic processes in tropical and temperate forests [proceedings]
Kourou, Guyane, France

hal-01032053
https://hal.archives-ouvertes.fr/hal-01032053

Éditeur(s) : HAL CCSD Ecole nationale du génie rural
Résumé :  
La conservation des ressources génétiques forestières garantit le maintien d'une diversité élevée, donc l'adaptation des espèces forestières tropicales aux conditions écologiques actuelles et futures. Elle nécessite d'élaborer des stratégies appropriées à l'aménagement des forêts et, pour cela, d'appréhender tout d'abord le niveau et la structure de la diversité génétique, de comprendre et prévoir ensuite sa dynamique. C'est dans cet esprit qu'une collaboration a été entreprise entre la Guyane française et le Brésil, malgré les différences existant entre les deux systèmes de gestion. À partir de résultats sur les parcelles expérimentales de Paracou (Guyane) et Tapajós (Brésil), un ensemble intégré d'outils a été élaboré, allant d'une base de données et d'utilitaires cartographiques jusqu'à un modèle de simulation de la dynamique des structures génétiques et à un logiciel de gestion.
ISSN: 0035-2829

hal-01032246
https://hal.archives-ouvertes.fr/hal-01032246

Éditeur(s) : HAL CCSD
Résumé : absent
Actes du BRG

hal-01031523
https://hal.archives-ouvertes.fr/hal-01031523

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Animals, especially insects, are principal pollen vectors of tropical trees and have behavior patterns that affect gene dispersal. Here, we explore complex pollination systems using a new simulation model Eco-Gene and considering, among other factors, flowering synchrony, spatial distribution of trees, degree of selfing, population densities, pollinator flight distances, pollen deposition, and pollinator response to floral display size. Sensitivity analyses using two contrasting tree data sets (Jacaranda copaia and Dipteryx odorata) determined the importance of each parameter on three response variables: the proportion of seeds from self-pollination, effective population size, and pollen dispersal. Spatial considerations and attractiveness of floral displays were prominent features determining the population genetic result of pollinators, and some biological implications of the results are discussed.
ISSN: 0006-3606

hal-01032091
https://hal.archives-ouvertes.fr/hal-01032091
DOI : 10.1111/j.1744-7429.2004.tb00309.x

Éditeur(s) : HAL CCSD
Résumé :  
The spatial genetic differentiation among European beech stands in western Germany was analysed by a new method. The genetic structure at 8 enzyme gene loci of 100 sampled populations was used as data base. The data represent authors' own results and published data from 8 different studies. For 10 geographic distance classes [h] from 0 to 500 km, the average genetic distance between the populations for each single gene locus, a gene-pool distance and the semivariances of genetic diversity gam were computed. Significant deviation from random spatial genetic structure was tested by permutation analysis. In many cases (Lap-B, Mdh-B, Mdh-C and 6Pgdh-C) the mean genetic distance between stands with spatial distance up to 200 km was significantly smaller and the genetic distance between stands with geographic distances of 200 and 400 km was significantly greater than expected for random spatial genetic structure. Similar tendencies were found for the gene-pool distance and the semivariances of diversity. Kriging, as a method for spatial interpolation, was used to draw synthetic maps of the spatial patterns of allelic frequencies and genetic diversity. The influence of postglacial recolonisation and regeneration with foreign seed material on the spatial genetic patterns are discussed
Forest genetics

hal-01032093
https://hal.archives-ouvertes.fr/hal-01032093