Éditeur(s) : HAL CCSD Elsevier
Résumé : The correct characterization of the effective reactive transport dynamics is an important issue for modeling reactive transport on the Darcy scale, specifically in situations in which reactions are localized, that is when different reactions occur in different portions of the porous medium. Under such conditions the conventional approach of homogenizing only the porous medium chemistry is not appropriate. We consider here reactive transport in a porous medium that is characterized by mass transfer between a mobile and a distribution of immobile regions. Chemical and physical heterogeneities are reflected by distributions of kinetic reaction rate constants and residence times in the immobile zones. We derive an effective reactive transport equation for the mobile solute that is characterized by non-local physical mass transfer and reaction terms. Specifically, chemical heterogeneity is upscaled in terms of a reactive memory function that integrates both chemical and physical heterogeneity. Mass transfer limitations due to physical heterogeneity yield effective kinetic rate coefficients that can be much smaller than the volumetric average of the local scale coefficients. These results help to explain and quantify the often reported discrepancy between observed field reaction rate constants and the ones obtained under well mixed laboratory conditions. Furthermore, these results indicate that transport under physical and chemical heterogeneity cannot be upscaled separately.
ISSN: 0169-7722

hal-00617674
https://hal.archives-ouvertes.fr/hal-00617674
DOI : 10.1016/j.jconhyd.2010.06.002

Éditeur(s) : HAL CCSD
Résumé : This work provides new constraints on the interactions between deformation and percolation of melt or fluids, as well as on the implications of these processes for the seismic properties of the mantle wedge. It is based on the analysis of spinel peridotites from the massif of Ronda (Spain) and two xenolith suites from active subduction zones (Kamchatka, Papua New Guinea). A coupled structural, petrological and geochemical study of these samples shows that they underwent a reactive percolation of melts or Si-rich fluids, which was synchronous to a deformation event occurring under high temperature and low stress conditions, consistent with the PT conditions at the base of the lithosphere or in the asthenosphere. This reactive percolation is responsible for enrichment in pyroxenes, mainly orthopyroxene, which is often localized in bands parallel to the high-temperature foliation. This enrichment is associated with grain size reduction and dispersion of the crystallographic orientation of olivine. The dominant slip system in olivine is {0kl}[100], which results in fast S-wave polarization parallel to the flow direction in the mantle. The decrease in the intensity of the olivine crystal preferred orientations associated with the enrichment in pyroxene results in significant decrease of the anisotropy that may induce an underestimation of the thickness of the anisotropic layer by up to 33%. The observed orthopyroxene enrichment also lowers the Vp/Vs ratio, but cannot explain Vp/Vs < 1.7 mapped locally in the fore-arc mantle in Japan and the Andes. Such low Vp/Vs ratios may however be explained by considering the intrinsic anisotropy of the peridotites, which is generally ignored in large-scale Vp/Vs ratio mapping of the mantle wedge. Infrared analyses show that olivine from the both xenolith collections contains less water than the theoretical saturation calculated for their estimated equilibrium temperature in the spinel stability field. These low water content are similar to those observed in spinel peridotites from other subduction zones and probably record both the low solubility of water in olivine at relatively low pressure and dehydration during exhumation of the xenoliths. These measured water contents as well as theoretical saturation estimations are not sufficient to change the dominant slip direction of in olivine from [100] to [001].
Ce travail apporte de nouvelles contraintes sur les interactions entre déformation et processus d'hydratation et de percolation de magma ou de fluides dans le manteau à l'aplomb d'une zone de subduction et leurs implications sur les propriétés sismiques dans le coin mantellique. Il se base sur l'analyse de péridotites à spinelle provenant du massif de Ronda (Espagne) et deux séries de xénolites issues de zones de subduction actives (Kamchatka, Papouasie-Nouvelle-Guinée). L'étude structurale, pétrologique et géochimique de ces échantillons montrent qu'ils ont subit une percolation réactive de magma ou de fluide synchrone d'une déformation de haute température basse contrainte cohérente avec les condition PT de la base de la lithosphère ou de l'asthénosphère. Cette percolation réactive est responsable d'un enrichissement en pyroxènes, qui est souvent localisé dans des bandes parallèles à la foliation. Cet enrichissement est associé à une dispersion de l'orientation cristallographique de l'olivine. Les systèmes de glissement dominant dans l'olivine sont dans tous les cas {0kl}[100], ce qui implique que la direction de polarisation rapide des ondes S dans la partie supérieure du coin mantellique est parallèle à la direction d'écoulement dans le manteau. La décroissance de l'intensité des OPR de l'olivine associée à l'enrichissement en pyroxènes a pour conséquence une réduction non négligeable de l'anisotropie sismique qui peut induire jusqu'à 33% d'erreur sur l'interprétation de l'épaisseur de la couche anisotrope. Un enrichissement en orthopyroxène peut aussi entraîner une baisse du rapport Vp/Vs, mais ne peut expliquer les rapports Vp/Vs <1,7 cartés dans certains avant-arcs. Cependant de telles valeurs peuvent être expliquées si l'anisotropie des péridotites du coin mantellique est prise en compte. Les analyses par spectroscopie infra-rouge montrent que les olivines des deux séries de xénolites étudiées contiennent moins d'eau que la saturation théorique calculée pour leurs températures d'équilibre dans le domaine du spinelle. Ces faibles concentrations en eau sont similaires à celles observées dans les olivines des péridotites à spinelle des autres zones de subduction. Elles enregistrent probablement la faible solubilité de l'eau dans l'olivine à des pressions relativement basses et la déshydratation au cours de l'exhumation des xénolites. Ces teneurs en eau mesurées ainsi que les estimations de la saturation théorique ne sont pas suffisantes pour changer la direction de glissement dominante dans l'olivine de [100] à [001].
https://tel.archives-ouvertes.fr/tel-00689832

tel-00689832
https://tel.archives-ouvertes.fr/tel-00689832
https://tel.archives-ouvertes.fr/tel-00689832/document
https://tel.archives-ouvertes.fr/tel-00689832/file/These-Soustelle2010.pdf

Éditeur(s) : HAL CCSD
Résumé : This study provides additional constraints on the relations between deformation, hydration and percolation of fluids and melts in the subcontinental lithospheric mantle beneath a craton and a rift, as well as their implication on its geodynamical behaviour. I have analysed the microstructures, the CPOs, and the hydrogen content of mantle xenoliths from the Kaapvaal craton, and two sets of xenoliths from different localities along the East African Rift (North Tanzanian Divergence and SE Ethiopia).The coarse-granular microstructures and the well-defined CPOs in Kaapvaal peridotites suggest a deformation followed by a long quiescence time. Orthorhombic olivine CPOs predominates, but axial-[100] and axial-[010] are also measured. Cratonic peridotites record multiple metasomatic episodes, leading to a significant compositional heterogeneity, which cannot be imaged by seismic studies. Olivine hydrogen contents are variable, but tend to increase until 150 km depth, reaching up to 50 ppm wt. H2O. The deeper samples are almost dry. Piston-cylinder experiments on hydrogen diffusion between a volatile-rich kimberlitic melt and forsterite suggest that the presence of CO2 in the system could significantly decrease water fugacity and thus forsterite hydration. These experimental results indicate that the hydrogen contents measured in olivine were acquired during a metasomatic event rather than during xenolith extraction by kimberlites. However, this metasomatism was not followed by remobilization of the cratonic root.In the North Tanzanian Divergence, localities within the rift axis and the volcanic transverse belt (Lashaine and Olmani) show significant differences in microstructures and olivine CPO patterns. In Lashaine, coarse-granular microstructures and orthorhombic to axial-[100] CPO patterns in olivine can be explained by transpressional deformation during the formation of the Mozambique belt, or by the occurrence of a remnant of a cratonic domain embedded within the Mozambique belt. Within the rift axis, porphyroclastic to mylonitic microstructures suggest a recent rift-related deformation accompanied by syn-kinematic melt-rock reactions, and followed by variable annealing. The strong heterogeneity in microstructures and olivine CPO suggests that this deformation was acquired during multiple tectonic events probably linked to episodic magma percolation, separated by quiescence episodes. The axial-[100] patterns in olivine and the oblique fast directions reported by SKS studies are coherent with transtensional deformation within the lithospheric mantle beneath the rift.The peridotites from SE Ethiopia are less recrystallized than the rift-axis Tanzanian peridotites, displaying coarse-porphyroclastic microstructures. Microstructures and orthorhombic CPOs in olivine suggest syn- to post-metasomatic deformation. S-waves polarization anisotropies calculated for these samples cannot explain alone the delay times reported by SKS studies in this part of the East-African Rift.
Les travaux réalisés durant cette thèse apportent de nouvelles contraintes sur les relations entre déformation, hydratation et percolation de fluides et/ou de magmas dans le manteau subcontinental sous un craton et sous un rift, et leurs implications sur son comportement rhéologique. Il repose sur l'analyse des microstructures, des OPRs et des teneurs en hydrogène de xénolites mantelliques du craton du Kaapvaal, et sur deux séries de xénolites provenant de différentes localités le long du rift Est-Africain (Divergence Nord Tanzanienne et SE de l'Ethiopie). Les microstructures granulaires à gros grains et les OPRs bien définies des péridotites du craton du Kaapvaal sont cohérentes avec un épisode de déformation suivi d'une longue période de quiescence. Les OPRs de l'olivine sont majoritairement à symétrie orthorhombique, mais des symétries axiale-[100] et axiale-[010] sont aussi mesurées. Les péridotites cratoniques enregistrent de multiples épisodes métasomatiques, ayant entraîné une hétérogénéité de compositions à petite échelle ne pouvant être détectée par les études sismiques. Les teneurs en hydrogène mesurées dans l'olivine sont variables, mais ont tendance à augmenter jusqu'à 150 km de profondeur, atteignant alors jusqu'à 50 ppm wt. H2O. En dessous de cette profondeur, les échantillons montrent des teneurs en hydrogène très faibles. Les expériences réalisées en piston-cylindre sur la diffusion de l'hydrogène issue d'un liquide kimberlitique vers de la forstérite suggèrent que la fugacité en eau pourrait fortement être diminuée par la présence de CO2, empêchant l'hydratation de l'olivine durant extraction des xénolites par les kimberlites. Ces résultats expérimentaux suggèrent que les teneurs en hydrogène dans l'olivine des péridotites du craton du Kaapvaal ont été acquises durant un épisode métasomatique en profondeur et non pendant leur extraction par les kimberlites. Ces teneurs n'ont toutefois pas à ce jour entraîné de remobilisation de la racine cratonique. Enfin, le calcul des propriétés sismiques des péridotites cratoniques révèle que les anisotropies générées par les OPRs de ces échantillons sont suffisantes pour expliquer les anisotropies mesurées par les ondes SKS et les ondes de surface.Les xénolites de la Divergence Nord-Tanzanienne, montrent des variations significatives de microstructures et d'OPR de l'olivine entre les péridotites des localités dans l'axe du rift et celles de la chaîne volcanique transverse (Lashaine et Olmani). A Lashaine, les microstructures granulaires à gros grains et les OPRs de type orthorhombique et axial-[010] peuvent être expliquée par une déformation en transpression liée à la formation de la chaîne Mozambique ou par la présence d'une relique d'un domaine cratonique à l'intérieur de la chaîne Mozambique. Dans l'axe du rift, les microstructures porphyroclastiques à mylonitiques suggèrent une déformation plus récente, accompagnée de réactions magma-roche sous des conditions proches du solidus, suivie d'un recuit variable. L'hétérogénéité des microstructures enregistrées par les échantillons du rift suggère de multiples épisodes de déformation localisée, probablement liés à l'injection percolation épisodique de magmas, espacés de périodes d'accalmie. Les OPRs de l'olivine de type axial-[100] et l'orientation des directions de polarisation des ondes SKS suggère que le rift s'est formé en régime de transtension Les péridotites du Sud-Est de l’Éthiopie présentent des microstructures porphyroclastiques à gros grains moins recristallisées qu'en Tanzanie. Les microstructures et les OPRs principalement de type orthorhombique suggèrent une déformation syn- à post-métasomatisme. Les anisotropies de polarisation des ondes S calculées pour ces échantillons sont insuffisantes pour expliquer à elles seules les déphasages des ondes SKS dans cette partie du rift.
https://tel.archives-ouvertes.fr/tel-01684759

Droits : info:eu-repo/semantics/OpenAccess
NNT : 2014MON20139
tel-01684759
https://tel.archives-ouvertes.fr/tel-01684759
https://tel.archives-ouvertes.fr/tel-01684759/document
https://tel.archives-ouvertes.fr/tel-01684759/file/43443_BAPTISTE_2014_archivage_cor.pdf

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
We investigated infection of rodents and shrews by Leptospira spp. in two localities of Cambodia (Veal Renh, Kaev Seima) and in four types of habitat (forests, non-flooded lands, lowland rain-fed paddy fields, houses) during the wet and the dry seasons. Habitat preference was common, and rodent and shrew species were found only in houses or in rain-fed paddy fields or in forests. Among 649 small mammals trapped belonging to 12 rodent species and 1 shrew species, 71 of 642 animals tested were carriers of Leptospira according to the 16S ribosomal RNA marker used. Rodent infection was higher in low-slope locations, corresponding to rain-fed paddy fields, especially in the rainy season and in Kaev Seima. Rodents (Rattus exulans) and shrews (Suncus murinus) inhabiting households showed significantly low levels of infections, whereas rodents living in and near to forests (shrubby wasteland, orchards) showed high levels of infection.
American Journal of Tropical Medicine and Hygiene

pasteur-00808144
https://hal-riip.archives-ouvertes.fr/pasteur-00808144
DOI : 10.4269/ajtmh.2012.11-0349
PUBMED : 22665613

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Massif du Sud is a large ophiolitic complex that crops out in the southern region of New Caledonia (SW Pacific). It is dominated by harzburgite tectonite that locally shows a transitional gradation to massive dunite up section. Clinopyroxene, orthopyroxene and plagioclase progressively appear in dunite up to the transition to layered wehrlite and orthopyroxene-gabbro. The dunite-wehrlite and wehrlite-gabbro contacts are parallel and the latter defines the paleo-Moho.;Highly depleted modal, mineral and bulk rock compositions indicate that harzburgites are residues after high degrees (20-30%) of partial melting mainly in the spinet-stability field. Their relative enrichment in HFSE, LREE and MREE is due to re-equilibration of melting residues with percolating melts. Dunite formed in the Moho transition zone by reaction between residual mantle harzburgite and olivine-saturated melts that led to pyroxene dissolution and olivine precipitation. Rare clinopyroxene and plagioclase crystallized in interstitial melt pores of dunite from primitive, low-TiO2, ultra-depleted liquids with a geochemical signature transitional between those of island arc tholeiites and boninites.;Ascending batches of relatively high-SiO2, ultra-depleted melts migrated through the Moho transition zone and generated wehrlite by olivine dissolution and crystallization of clinopyroxene, orthopyroxene and plagioclase in variable amounts. These liquids were more evolved and were produced by higher degrees of melting or from a more depleted source compared with melts that locally crystallized clinopyroxene in dunite. Ultra-depleted magmas, non-cogenetic with those that formed the Moho transition zone, ascended to the lower crust and generated gabbroic cumulates with subduction-related affinity. Thus, the ultramafic and mafic rocks in the Moho transition zone and lower crust of the Massif du Sud ophiolite are not products of fractional crystallization from a single magma-type but are the result of migration and accumulation of different melts in a multi-stage evolution. The record of high partial melting in the mantle section, and migration and accumulation of ultra-depleted subduction-related melts in the Moho transition zone and lower crust support that the Massif du Sud ophiolite is a portion of forearc lithosphere generated in an extensional regime during the early phases of the subduction zone evolution. Our results show the existence of different types of ultra-depleted melt compositions arriving at the Moho transition zone and lower crust of an infant intraoceanic paleo-arc. Ultra-depleted melts may thus be a significant component of the melt budget generated in oceanic spreading forearcs prior to aggregation and mixing of a large range of melt compositions in the crust.
ISSN: 0009-2541

hal-00429333
https://hal.archives-ouvertes.fr/hal-00429333
DOI : 10.1016/j.chemgeo.2009.06.004

Éditeur(s) : HAL CCSD
Résumé :  
The gelatinous layer (G-layer) of tension wood fibres in hardwood contributes to the mechanical function of the living tree and has significant consequences on properties of solid wood. Its size, shape and structure observed by optical or electron microscopy exhibits characteristic anatomical features. However, we found that sectioning of non-embedded wood samples results in an uncontrolled swelling of the G-layer was monitored by serial sections, from an embedded wood sample, from its trimmed transverse face to that located several hundreds of micrometers deep. The results revealed that the initial cutting before embedding produced a border effect responsible for the swollen nature, which is similar to sections from non-embedded material. After a conventional embedding technique was applied, a section of at least 30 micrometres below the trimming surface is required to observe an un-swollen G-layer.
IAWA Journal

hal-01032054
https://hal.archives-ouvertes.fr/hal-01032054

Résumé : Ce travail analyse le dancehall, dernière forme en date de la musique jamaïcaine, à travers les questions de violence et de sexualité. Cette musique rencontre des difficultés sur le plan local et international non seulement à cause des thématiques abordées mais aussi par la manière dont elles sont traitées. Ainsi, le traitement de la violence à travers le gun talk, ces textes faisant l’apologie des armes à feu, entraîne des critiques, on leur reproche d’être des incitations à la violence physique, psychologique, au désordre social et on juge leur influence négative. Par ailleurs, l’approche très explicite et très crue de la sexualité entraîne également des critiques du fait de la teneur misogyne et homophobe de certaines chansons.Par conséquent, cette étude du dancehall explique les raisons pour lesquelles le contexte particulier de la Jamaïque a conduit à ce genre de propos. Puis, elle démontre que les textes incriminés pour homophobie ou misogynie renferment une codification de la sexualité qui va au-delà de l’orientation sexuelle et de l’opposition hétérosexualité/homosexualité, pour ériger un modèle valorisant et valorisé en termes de pratiques sexuelles (le coït pénis/vagin). Pour répondre à ces questions, cette analyse s’appuie sur une série d’outils offrant une vision cohérente de cette musique : les travaux précédents sur le dancehall, les traductions d’un large éventail de chansons, l’utilisation de l’Internet qui permet de suivre les derniers déroulements de ce phénomène culturel en constante évolution et enfin les entretiens et les enquêtes menés sur le terrain.
Completely different to play a part in the social unrest that this country is facing. The second part of the thesis focuses on the issues of violence and sexuality in dancehall music. It shows how politics and religion have a strong influence on the population and offer some legitimacy to the lyrics which lead to the controversies surrounding dancehall music. On the one hand, religion is the cornerstone of this society (although Jamaicans have integrated some principles and do not pay much attention to others) and determines what should be endorsed or rejected. On the other hand, the politicians apply some sort of physical and psychological violence to maintain their leading position. In addition, these politicians rely on the contempt for homosexuality to create cohesion within a society that is deeply characterized by divisions and tensions of all kinds. In the Jamaican context that is deeply influenced by patriarchal values, the individuals of the lower social strata (especially males) who experience difficulties to obtain a valorizing social status can turn to violence and criminal activities, and will hang to heterosexuality and “moral” sexual practices as vehicles to restored self-esteem (this vision of sexuality is one of the only valorizing aspects of masculinity that any individual can rely on regardless of their social status). Consequently, these sexual archetypes are expressed through the lyrics of dancehall music and are promoted by the artists of dancehall, self-proclaimed spokesperson for the Jamaican population. The third part addresses the issue of the perception of dancehall music on the international level through the issue of sexuality and homosexuality. This part shows that even though the language used by the artists can be hardly understood, some lyrics leave the listeners with different way of interpreting the message, especially when it comes to threatening some people physically or psychologically on the ground of sexual orientations and practices. These songs which express strong criticism towards some individuals have triggered vehement reactions from sexual minority groups. Different campaigns on the international level have forced the artists to tone down their lyrics. These campaigns show how the music is also utilized by these gay groups to fight against discrimination. Because of or thanks to the media attention that Jamaican music enjoys, the homosexuals are able to expose to the public opinion the physical and psychological violence they are experiencing in Jamaica. In addition, the close geographic, cultural and economic relationship between Jamaica and the USA shows, on the one hand, how homosexuality is perceived on the island as an imposed foreign value and on the other hand, how this Caribbean country is labeled as a homophobic nation. And finally, the influence of Jamaica on the international level allows us to analyze dancehall music in the French Caribbean islands. This chapter shows how these local artists can use the Jamaican codes and adapt them to their own reality when they correspond with the values of their own society.

http://www.theses.fr/2013AGUY0728/document

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
In 2008 a fatal case of primary amoebic meningoencephalitis, due to the amoeboflagellate Naegleria fowleri, occurred in Guadeloupe, French West Indies, after a child swam in a bath fed with geothermal water. In order to improve the knowledge on free-living amoebae in this tropical part of France, we investigated on a monthly basis, the presence of Naegleria spp. in the recreational baths, and stream waters which feed them. A total of 73 water samples, 48 sediments and 54 swabs samples were collected from 6 sampling points between June 2011 and July 2012. The water samples were filtered and the filters transferred to non-nutrient agar plates seeded with a heat-killed suspension of Escherichia coli while sediment and swab samples were placed directly on these plates. The plates were incubated at 44°C for the selective isolation of thermophilic Naegleria. To identify the Naegleria isolates the internal transcribed spacers, including the 5.8S rDNA, were amplified by polymerase chain reaction and the sequence of the PCR products was determined. Thermophilic amoebae were present at nearly all collection sites. The pathogenic N. fowleri was the most frequently encountered thermophilic species followed by N. lovaniensis. The concentration of N. fowleri was rather low in most water samples, ranging from 0 to 22 per liter. Sequencing revealed that all N. fowleri isolates belonged to a common Euro-American genotype, the same as detected in the human case in Guadeloupe. These investigations need to be continued in order to counsel the health authorities about prevention measures, because these recreational thermal baths are used daily by local people and tourists.
ISSN: 1932-6203

pasteur-00782031
https://hal-riip.archives-ouvertes.fr/pasteur-00782031
https://hal-riip.archives-ouvertes.fr/pasteur-00782031/document
https://hal-riip.archives-ouvertes.fr/pasteur-00782031/file/article_naegleria_plos_one.pdf
DOI : 10.1371/journal.pone.0054414