Éditeur(s) : HAL CCSD Taylor & Francis (Routledge)
Résumé : International audience
The purpose of this study was to determine the effect of triathlon training using multiple, short cycle-run sequences (multicycle-run training) on cycle-run performance. Twelve competitive triathletes, randomized into two groups, underwent multicycle-run training or normal training for 6 weeks. During this period, baseline training remained the same for both groups, and only the high-intensity component differed. The differentiated exercises were performed at or above 100% maximal aerobic velocity. The improvements in overall cycle-run performance were similar (3.3 +/- 1.4 % and 6.1 +/- 1.7% rise in Performance in multicycle-run and normal training, respectively). However, the improvement in performance was significantly greater for the multicycle-run training (-11.2 +/- 6.8 s versus -1.2 +/- 7. 7 s for multicycle-run training and normal training, respectively) during both the cycle-run change and the first 333-m lap, which together are termed the cycle-run transition. We concluded that 6 weeks of multicycle-run training did not induce greater improvement in cycle-run performance than did normal training in competitive triathletes. However, it did induce significant improvement in the cycle-run transition. This finding indicates that multicycle-run training may help competitive triathletes to develop greater skill and better physiological adaptations during this critical transition period of the triathlon race.
ISSN: 0270-1367

hal-00720124
https://hal.univ-antilles.fr/hal-00720124

Éditeur(s) : PSIC 11 - 11th Pacific Science Inter-Congress : Pacific Countries and their Ocean: Facing Local and Global Changes / 2nd Symposium on French Research in the Pacific. March 2 - 6, 2009 Tahiti, French Polynesia.
Résumé : Experimental infections together with epidemiological studies have shown that pathogenic and non‐pathogenic isolates of V. nigripulchritudo co‐existed in shrimp farm environment (2, 3). Moreover, obtained results also demonstrated that the “summer syndrome”was caused by a single, possibly emerging, cluster of virulent strains. Consequently, it was hypothesized that pathogenic strains of V. nigripulchritudo may persist from one year to the next in the shrimp farm environment and re‐develop inside the grow‐out system at the following rearing cycle (3). This study was therefore aimed at determining whether V. nigripulchritudo isolates may survive, or not, in a shrimp pond bottom soil during a 18‐week drying period. To this end, V.nigripulchritudo mapping was performed with recently developed molecular tools and classical culture‐dependent techniques.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00197/30874/29242.pdf
http://archimer.ifremer.fr/doc/00197/30874/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study compared the conventional parameters of anaerobic cycling power in physically active non-cyclists using the Pro-Race® system and a traditional chainring. The force--velocity test was chosen for this purpose because it is the shortest validated cycling laboratory test in which each parameter of maximal anaerobic power can be estimated. The power output (Wmax) and the force at whichWmax is produced (Fopt) were significantly improved with the eccentric chainring (1100±227W versus 1006±197W and 1.39±0.15 N/kg body mass versus 1.13±0.16 N/kg body mass with the eccentric and round designs, respectively; P < 0.006 and P < 0.0004, respectively). The power gained (delta power) was significantly correlated with the eccentric chainring Fopt (r = 0.649; P < 0.05), the mid-thigh circumference (r = 0.685; P < 0.05), the estimated lean thigh volume (r = 0.765; P < 0.01) and the estimated lean lower limb volume (r = 0.665; P < 0.05). We concluded that the eccentric chainring significantly improved the estimated anaerobic power output during a force--velocity test by increasing the force component, Fopt. Cautious interpretation of our results suggests that the subjects with physical attributes that contribute to developing high forces may have a significant advantage in performing with the eccentric chainring.
ISSN: 1440-2440

hal-00703458
https://hal.univ-antilles.fr/hal-00703458
DOI : 10.1016/j.jsams.2007.06.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Seven male subjects volunteered to participate in an investigation of whether the diurnalincrease in core temperature influences the effects of pre-cooling or passivewarm-up on muscular power. Morning (07:00-09:00 h) and afternoon (17:00-19:00 h) evaluation of maximal power output during a cycling sprint was performed on different days in a control condition (room at 21.8 °C, 69% rh), after 30 min of pre-cooling in a cold bath (16 °C), or after 30 min of passivewarm-up in a hot bath (38 °C). Despite an equivalent increase from morning to afternoon in core temperature in all conditions (+0.4 °C, P < 0.05), power output displayed a diurnalincrease in control condition only. A local cooling or heating of the leg in a neutral environment blunted the diurnal variation in muscular power. Because pre-cooling decreases muscle power, force and velocity irrespective of time-of-day, athletes should strictly avoid any cooling before a sprint exercise. In summary, diurnal variation in muscle power output seems to be more influenced by muscle rather than core temperature.
ISSN: 1440-2440

hal-00706159
https://hal.univ-antilles.fr/hal-00706159
DOI : 10.1016/j.jsams.2007.09.008

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Estrogen receptors (ER) α and β are found in both women and men in many tissues, where they have different functions, including having roles in cell proliferation and differentiation of the reproductive tract. In addition to estradiol (E2), a natural hormone, numerous compounds are able to bind ERs and modulate their activities. Among these compounds, phytoestrogens such as isoflavones, which are found in plants, are promising therapeutics for several pathologies. Glyceollins are second metabolites of isoflavones that are mainly produced in soybean in response to an elicitor. They have potentially therapeutic actions in breast cancer by reducing the proliferation of cancer cells. However, the molecular mechanisms driving these effects remain elusive. METHODS: First, to determine the proliferative or anti-proliferative effects of glyceollins, in vivo and in vitro approaches were used. The length of epithelial duct in mammary gland as well as uterotrophy after treatment by E2 and glyceollins and their effect on proliferation of different breast cell line were assessed. Secondly, the ability of glyceollin to activate ER was assessed by luciferase assay. Finally, to unravel molecular mechanisms involved by glyceollins, transcriptomic analysis was performed on MCF-7 breast cancer cells. RESULTS: In this study, we show that synthetic versions of glyceollin I and II exert anti-proliferative effects in vivo in mouse mammary glands and in vitro in different ER-positive and ER-negative breast cell lines. Using transcriptomic analysis, we produce for the first time an integrated view of gene regulation in response to glyceollins and reveal that these phytochemicals act through at least two major pathways. One pathway involving FOXM1 and ERα is directly linked to proliferation. The other involves the HIF family and reveals that stress is a potential factor in the anti-proliferative effects of glyceollins due to its role in increasing the expression of REDD1, an mTORC1 inhibitor. CONCLUSION: Overall, our study clearly shows that glyceollins exert anti-proliferative effects by reducing the expression of genes encoding cell cycle and mitosis-associated factors and biomarkers overexpressed in cancers and by increasing the expression of growth arrest-related genes. These results reinforce the therapeutic potential of glyceollins for breast cancer.
ISSN: 1478-811X

hal-01560288
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560288
DOI : 10.1186/s12964-017-0182-1
PUBMED : 28666461

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In order to study the effect of a competitive triathlon season on maximal oxygen uptake (VO2max), aerobic power (AeP) and anaerobic performance (AnP) of the lower limbs, eight triathletes performed exercise tests after: (1) a pre-competition period (Pre-COMP) (2) a competitive period (COMP), and (3) a low (volume and intensity) training period (Post-COMP). The tests were a vertical jump-and-reach test and an incremental exercise test on a cycle ergometer. Ventilatory data were collected every minute during the incremental test with an automated breath-by-breath system and the heart-rate was monitored using a telemetric system. RESULTS: No changes in VO2max were observed, whereas AeP decreased after Post-COMP compared to Pre-COMP and COMP and AnP decreased during COMP compared to Pre-COMP and Post-COMP. In addition, second ventilatory threshold (VT2) and power output at first ventilatory threshold (VT1) and VT2 decreased after Post-COMP. CONCLUSION: This study showed that six weeks of low volume and intensity of training is too long a period to preserve adaptations to training, although a stable maximal oxygen uptake throughout the triathlon season was observed. Moreover, the AnP decrease during COMP was probably in relation with the repetitive nature of the training mode and/or triathlon competitions.
ISSN: 0905-7188

hal-00720811
https://hal.univ-antilles.fr/hal-00720811
https://hal.univ-antilles.fr/hal-00720811/document
https://hal.univ-antilles.fr/hal-00720811/file/Sms-10170.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : Grain-size analyses, coupled with end-member modelling, have been performed on the terrigenous fraction of two Leg 184 Ocean Drilling Program sites (1144 and 1146) from the South China Sea. The grain-size distributions over the last 1.8 Ma enable a new interpretation of their connections to sea-level variations and East Asian monsoon strength. Previous investigations in this area have associated grain-size variability with enhanced eolian input during glacial stages. End-member modelling downgrades the importance of this eolian contribution and indicates that the sediments can be described as a mixture of three end-members: fluvial mud inputs, shelf reworking and river mouth migration. Grain-size variations in the Pleistocene section of the cores indicate a multiple-stage evolution: (i) from 1.8 to 1.25 Ma, the downcore grain-size variations are low but show a correspondence between monsoon rainfall intensity and the fine grain-sized fluvial inputs; no link with sea-level variations is noticeable; (ii) from 1.25 to 0.9 Ma, there is an increase (decrease) in the intermediate (fine) end-member (not, vert, similar 100 kyr cycle) that is associated with the onset of a stronger summer monsoon and modest shelf reworking; (iii) from 0.9 to 0 Ma the grain-size record is dominated by global sea-level variations; each glacial stage is associated with extensive shelf reworking and conveyance of coarse particles to the basin.
ISSN: 0033-5894

hal-00404671
https://hal.archives-ouvertes.fr/hal-00404671
DOI : 10.1016/j.yqres.2007.03.004

Résumé : Les îles des Caraïbes, et parmi elles les Antilles Françaises, présentent un potentiel considérable en matière d'élevage en cage de poissons marins en raison de la disponibilité en sites potentiels, de la forte demande locale en produits de la mer, des possibilités d'exportation vers l'Europe ou l'Amérique du Nord et des bonnes performances zootechniques des espèces tropicales. Parmi les poissons marins tropicaux, la dorade coryphène revêt l'interêt d'être présent dans toute la ceinture inter tropicale, d'avoir un marché large et relativement bien connu en raison de l'existence de pêcheries, et de posséder des performances zootechniques hors du commun. Cependant malgré certains travaux américains annonçant la maîtrise du cycle biologique et en dépit de projets d'investisseurs sérieux, cette filière d'élevage tarde à se développer. Ce rapport fait le point des connaissances actuelles sur la biologie de la dorade coryphène et analyse les données aquacoles afin de mettre en évidence les points de blocage éventuels à son élevage et d'orienter les programmes de recherche vers les sujets permettant leur levée. Les performances de croissance sont remarquables (2 kg en 6-7 mois depuis l'oeuf), la reproduction a lieu toute l'année sous nos lattitudes, l'élevage larvaire semble maîtrisé (malgré une survie qui pourrait être améliorée) et les problèmes de nutrition en grossissement semblent avoir été contournés. Cependant le comportement agressif en élevage est insuffisamment étudié et reste problématique notamment chez les mâles au delà de 2 kg. Ce dernier point ouvre des perspectives de recherche sur le contrôle du sexe et/ou de la maturation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00081/19222/16817.pdf
http://archimer.ifremer.fr/doc/00081/19222/

Éditeur(s) : HAL CCSD Royal Society of Chemistry
Résumé : International audience
Abstract View references (60)Here we show the long term performance at high temperatures of a multi-tube module containing 8 membranes in 4 parallel lines with a total of 545 cm 2 area. The membranes were prepared via thin film dip coating of cobalt oxide silica (CoO xSi) sol-gel on tubular alumina supports. A preliminary study found that the sol-gel containing 20 mol% cobalt oxide formed the best microporous structure with the highest surface area and pore volume. All resulting membranes delivered permeances of ∼1 × 10 -7 mol m -2 s -1 Pa -1 at 500 °C, indicating a high repeatability for the membrane fabrication process. The permselectivities of helium (He) and hydrogen (H 2) over carbon dioxide (CO 2) and nitrogen (N 2) increased from 10-20 at 100 °C to values close to 1000 at 500 °C. Additionally, the apparent energies of activation (E act) for the smaller kinetic diameter gases He and H 2 at 12.2 and 19.5 kJ mol -1 were high and contrary to the negative values for larger gases N 2 and CO 2 at -1.8 and -7.4 kJ mol -1. These remarkable results were attributed to the molecular sieving mechanism of the microporous silica which was enhanced by the embedding of cobalt oxide into the matrix, delivering structural control with an average pore size of 3 Å. The E act for H 2 permeance was higher than that of He, indicating that the cobalt oxide played an important role in H 2 transport. Two membrane lines performed exceptionally well for binary gas mixture processing with H 2 purity reaching values close to 100% in the permeate stream for argon (Ar) concentrations of up to 80% in the retentate stream. A major finding here is that the binary gas selectivity was independent of temperature, contrary to the permselectivity observed for single gas permeance. Further, the H 2 flow rate was greatly affected by the concentration of Ar in the mixture, while the temperature dependency played only a marginal role. In particular, competitive adsorption in the percolative pathways containing pore constrictions or bottlenecks of the anisotropic CoO xSi matrix allowed Ar to impede H 2 diffusion. Finally, the CoO xSi membranes proved thermally stable and robust for 2000 h of testing for various thermal cycles up to 500 °C. © The Royal Society of Chemistry 2012.
Energy & Environmental Science

hal-01683199
https://hal.univ-antilles.fr/hal-01683199
DOI : 10.1039/c2ee03247c

Éditeur(s) : HAL CCSD Human Kinetics
Résumé : International audience
Purpose: Postexercise alveolar-capillary membrane-diffusing capacity (DLco) often decreases in highly trained endurance athletes and seems linked to their training status. To test the hypothesis that training status influences postexercise DLco, 13 male and 2 female triathletes (20.2 ± 4.4 y old, 175.2 ± 6.7 cm tall; weight in a range of 66.6 ± 7.4 kg to 67.4 ± 7.8 kg during the 1-y study) were randomized into experimental (n = 7) and control (n = 8) groups and performed VO2max cycle tests and simulated cycle-run successions (CR) of 30 min + 20 min after 3 periods in the competitive season. Methods: Both groups were tested before (pre- HTP) and after a 30-wk high-training period (HTP) with high training volume, intensity, and frequency. The experimental group was then also tested after a 6-wk low-training period (LTP) with low training volume, intensity, and frequency, while the control group continued training according to the HTP schedule for these 6 wk. Ventilatory data were collected continuously. DLco testing was performed before and 30, 60, and 120 min after the CR trials. Results: Whatever the period or group, DLco was significantly decreased 30 min after CR, with a significantly greater decrease in the experimental group than the control group in LTP (–15.7% and –9.3% of DLco, respectively). Conclusions: Six weeks of low training volume and intensity were sufficient to reverse the effects of high training volume and intensity on the alveolar-capillary membrane after a CR succession in competitive triathletes.
ISSN: 1555-0265

hal-01163434
https://hal.univ-antilles.fr/hal-01163434

Éditeur(s) : HAL CCSD University of Uludag
Résumé : International audience
The aim of this study was to compare the core temperature (TC) and markers of hydration status in athletes performing a half Ironman triathlon race in hot and humid conditions (27.2 ± 0.5°C, relative humidity was 80 ± 2%). Before and immediately after the 2012 Guadeloupe half Ironman triathlon, body mass and urine osmolality (mean ± SD) were measured in 19 well-trained male triathletes. TC was measured before and after the race, and at each transition during the event, using an ingestible pill telemetry system. Ambient temperature and heart rate (HR) were measured throughout the race. Mean ± SD performance time was 331 ± 36 minutes and HR was 147 ± 16 beats·min-1. Wet bulb globe temperature (WBGT) averaged 25.4 ± 1.0°C and ocean temperature was 29.5°C. The average TC at the beginning of the race (TC1) was 37.1 ± 0.7°C; it was 37.8 ± 0.9°C after swimming (TC2), 37.8 ± 1.0°C after cycling (TC3), and (TC4) 38.4 ± 0.7°C after running. Body mass significantly declined during the race by 3.7 ± 1.9 kg (5.0 ± 2.4%; p < 0.05), whereas urine osmolality significantly increased from 491.6 ± 300.6 to 557.9 ± 207.9 mosm·kg-1 (p < 0.05). Changes in body mass were not related to finishing TC or urine osmolality. Ad libitum fluid intake appears applicable to athletes acclimatized to tropical climate, when performing a half Ironman triathlon in in a warm and humid environment.
ISSN: 1303-2968

hal-01152333
https://hal.univ-antilles.fr/hal-01152333

Éditeur(s) : Université de Nantes
Résumé : The reproductive cycle of Megathura crenulata was documented and quantification of oocyte lipid reserves with lipo-specific stains was explored in both this species and in Crassostrea gigas. The necessity of providing food to female broodstock C. gigas in spring was re-evaluated, because subsequent larval and post-larval rearing performance was not affected by broodstock starvation during conditioning. Developmental study of the organs responsible of particle processing in C. gigas allowed the identification of critical stages related to the ontogenesis of each organ, as well as a better understanding of the evolution of these organs, highly-modified in the Ostreidae. Ciliary type identification and mucocyte mapping from post-larval to adult stage showed that the heterorhabdic specialization precedes the anatomic formation of gill plicae specific to this condition.
Le cycle reproducteur de Megathura crenulata a été documenté et la quantification des réserves ovocytaires par des colorants lipospécifiques a été tentée, sans résultats concluants pour cette espèce, ni pour Crassostrea gigas. L'intérêt d'une alimentation des géniteurs femelles C. gigas au printemps est re-évalué, car la performance ultérieure des élevages larvaires et post-larvaires n'a pas été affectée par le jeûne imposé lors du conditionnement. L'étude du développement des organes impliqués dans le traitement des particules chez C. gigas a permis d'identifier des stades critiques associés à l'ontogenèse de chaque organe, ainsi qu'une meilleure compréhension de l'évolution de ces organes si particuliers chez les Ostreidae. L'examen des types ciliaires et la cartographie des mucocytes de la post-larve à l'adulte ont montré que la spécialisation hétérorhabdique précède même la formation anatomique des plis branchiaux caractéristiques de cette condition.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-1371.pdf
http://archimer.ifremer.fr/doc/00000/1371/

Éditeur(s) : Université Paul Sabatier, Toulouse III
Résumé : The marine phytoplankton in the ocean represents only less than 1% of global biomass. Phytoplankton performs half of all photosynthesis. This autotrophic biomass in ocean is then an essential element in the climate regulation through processes as carbon dioxide absorption during the photosynthesis. Therefore, we need to estimate precisely this biomass as well as the processes which affect it. Using remotely sensed data (altimetry and ocean colour) and a coupled physical/biogeochemical model (MERCATOR-OPA/NPZDDON), Rossby waves and their influence on phytoplankton biomass are specifically studied in the North Atlantic Ocean. Their features and their influences on surface chlorophyll concentrations were analysed. Through the different mechanisms identified, we estimated that these waves can induce local increases from 60% to 150% of the estimated primary production.
Même si l'océan ne représente que moins de 1% de la biomasse liée aux plantes sur la terre, il est responsable de près de la moitié de la photosynthèse nette de la biosphère. Cette biomasse est par conséquent un élément essentiel dans la régulation du climat à travers par exemple le cycle océanique du carbone. Il est donc nécessaire d'estimer correctement cette biomasse ainsi que les processus qui l'affectent. A l'aide de données satellites altimétriques et couleur de l'eau et d'un modèle couplé physique/biogéochimie (MERCATOR-OPA / NPZDDON), les ondes de Rossby et leur influence sur cette biomasse sont spécifiquement étudiées dans l'océan Atlantique Nord. Leurs propriétés et leur influence sur les concentrations en chlorophylle de surface sont analysées. Au travers des mécanismes mis en jeu identifiés, nous estimons que ces ondes peuvent entraîner une augmentation locale comprise entre 60% et 150% de la production primaire estimée.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2454.pdf
http://archimer.ifremer.fr/doc/00000/2454/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Big storm events represent a major risk for populations and infrastructures settled on coastal lowlands. In the Western Mediterranean, where human societies colonized and occupied the coastal areas since the Ancient times, the variability of storm activity for the past three millennia was investigated with a multi-proxy sedimentological and geochemical study from a lagoonal sequence. Mappings of the geochemistry and magnetic susceptibility of detrital sources in the watershed of the lagoon and from the coastal barriers were undertaken in order to track the terrestrial or coastal/marine origin of sediments deposited into the lagoon. The multi-proxy analysis shows that coarser material, low magnetic susceptibility, and high strontium content characterize the sedimentological signature of the paleostorm levels identified in the lagoonal sequence. A comparison with North Atlantic and Western Mediterranean paleoclimate proxies shows that the phases of high storm activity occurred during cold periods, suggesting a climatically-controlled mechanism for the occurrence of these storm periods. Besides, an in-phase storm activity pattern is found between the Western Mediterranean and Northern Europe. Spectral analyses performed on the Sr content revealed a new 270-year solar-driven pattern of storm cyclicity. For the last 3000 years, this 270-year cycle defines a succession of ten major storm periods (SP) with a mean duration of 96 ± 54 yr. Periods of higher storm activity are recorded from >680 to 560 cal yr BC (SP10, end of the Iron Age Cold Period), from 140 to 820 cal yr AD (SP7 to SP5) with a climax of storminess between 400 and 800 cal yr AD (Dark Ages Cold Period), and from 1230 to >1800 cal yr AD (SP3 to SP1, Little Ice Age). Periods of low storm activity occurred from 560 cal yr BC to 140 cal yr AD (SP9 and SP8, Roman Warm Period) and from 820 to 1230 cal yr AD (SP4, Medieval Warm Period).
ISSN: 0277-3791

hal-01277796
https://hal.archives-ouvertes.fr/hal-01277796
DOI : 10.1016/j.quascirev.2015.10.009

Éditeur(s) : HAL CCSD European Geosciences Union (EGU)
Résumé : International audience
Storms and tsunamis, which may seriously endanger human society, are amongst the most devastating marine catastrophes that can occur in coastal areas. Many such events are known and have been reported for the Mediterranean, a region where high-frequency occurrences of these extreme events coincides with some of the most densely populated coastal areas in the world. In a sediment core from the Mar Menor (SE Spain), we discovered eight coarse-grained layers which document marine incursions during periods of intense storm activity or tsunami events. Based on radiocarbon dating, these extreme events occurred around 5250, 4000, 3600, 3010, 2300, 1350, 650, and 80 years cal BP. No comparable events have been observed during the 20th and 21st centuries. The results indicate little likelihood of a tsunami origin for these coarse-grained layers, although historical tsunami events are recorded in this region. These periods of surge events seem to coincide with the coldest periods in Europe during the late Holocene, suggesting a control by a climatic mechanism for periods of increased storm activity. Spectral analyses performed on the sand percentage revealed four major periodicities of 1228 ± 327, 732 ± 80, 562 ± 58, and 319 ± 16 years. Amongst the well-known proxies that have revealed a millennial-scale climate variability during the Holocene, the ice-rafted debris (IRD) indices in the North Atlantic developed by Bond et al. (1997, 2001) present a cyclicity of 1470 ± 500 years, which matches the 1228 ± 327-year periodicity evidenced in the Mar Menor, considering the respective uncertainties in the periodicities. Thus, an in-phase storm activity in the western Mediterranean is found with the coldest periods in Europe and with the North Atlantic thermohaline circulation. However, further investigations, such as additional coring and high-resolution coastal imagery, are needed to better constrain the main cause of these multiple events.
ISSN: 1814-9324

hal-01357199
https://hal.archives-ouvertes.fr/hal-01357199
https://hal.archives-ouvertes.fr/hal-01357199v2/document
https://hal.archives-ouvertes.fr/hal-01357199/file/cp-12-1389-2016.pdf
DOI : 10.5194/cp-12-1389-2016

Résumé : Cette thèse concerne la modélisation des dynamiques de maladies foliaires de cultures pérennes tropicales à différentes échelles spatiales. Cette approche de modélisation est appliquée à la cercosporiose noire du bananier. Il s’agit d’explorer et de déterminer les paramètres environnementaux et de résistance de l’hôte ayant une influence significative sur la dynamique spatiotemporelle de la maladie et d’apporter des éléments associés au contrôle de la cercosporiose noire.Deux modèles ont été développés dans le cadre de cette thèse. La dynamique épidémiologique au niveau de la plante est décrite par un modèle mécaniste décomposé en un modèle de croissance de la plante et un module épidémiologique décrivant le cycle épidémique du pathogène. L’architecture du bananier est prise en compte par le biais de compartiments foliaires positionnés dans l’espace. Le modèle a été validé par un jeu de données indépendant. Les expérimentations numériques et l’analyse de sensibilité du modèle réalisées par les méthodes de Morris et de e-FAST ont permis de mieux comprendre le fonctionnement épidémique de cette maladie et d’identifier les paramètres influant le plus la dynamique épidémique en particulier la vitesse d’extension des lésions, la durée d’incubation et l’efficacité d’infection .L’approche bayésienne a permis de prendre en compte l’information a priori disponible pour ces trois paramètres sur lesquels a porté l’inférence statistique. L’analyse de sensibilité du modèle a également permis d’identifier l’influence de deux paramètres liés à la croissance de la plante : le nombre de feuilles sur une plante et le rythme d’émission foliaire Un modèle de dynamique spatio-temporelle de la cercosporiose noire a été développé à l’échelle d’un territoire à partir d’enquêtes effectuées enMartinique pendant la période d’invasion de cette maladie de septembre 2010 à mai 2012. Les données récoltées étant censurées, l’inférence des paramètres du modèle a été réalisée dans un cadre bayésien en utilisant un algorithme d’augmentation de données. Le modèle et l’inférence développés permettent de reconstruire la dynamique spatio-temporelle de l’invasion et de prédire la fin d’invasion sur le territoire.Les deux modèles de dynamiques spatio-temporelles développés à deux échelles spatiales différentes ont permis d’acquérir des informations importantes pour construire des outils de conception de méthode de contrôle de la cercosporiose noire des bananiers.
This thesis concerns the modeling of the dynamics of foliar diseases of tropical tree crops at different spatial scales. This modeling approach is applied to black Sigatoka of banana. It is to explore and determine the environmental parameters and host resistance has a significant influence on the spatiotemporal dynamics of the disease and to provide elements associated with the control of Sigatoka noire.Deux models were developed as part of this thesis. The epidemiological dynamics at the plant is described by a mechanistic model decomposed into a growth model of the plant and an epidemiological unit describing the pathogen epidemic cycle. The architecture of the banana is taken into account through foliar compartments positioned in space. The model was validated by an independent data set. Numerical experiments and model sensitivity analysis performed by the methods of Morris and e-FAST enabled to better understand the functioning of this epidemic disease and identify the parameters affecting the most dynamic epidemic especially speed extension of the lesions, the incubation period and efficiency of Bayesian .L'approche infection allowed to take into account prior information available for these three parameters that were the statistical inference. The model sensitivity analysis also identified the influence of two parameters related to plant growth: the number of leaves on a plant and rate of leaf emission A dynamic model of space-time Black Sigatoka has been developed at the scale of a territory from surveys enMartinique during the period of invasion of the disease from September 2010 to May 2012. The data collected being censored, inference of model parameters has was performed in a Bayesian framework, using a data augmentation algorithm. The model developed and inference possible to reconstruct the spatiotemporal dynamics of the invasion and predict the end of the invasion territoire.Les two spatio-temporal dynamics models developed at two different spatial scales has been gained important information for build tools design method of control of black Sigatoka of banana.

http://www.theses.fr/2015AGUY0835/document

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Impact of GPS (Global Positioning System) data assimilation is assessed here using a high-resolution numerical weather prediction system at 2.5 km horizontal resolution. The Zenithal Tropospheric Delay (ZTD) GPS data from mesoscale networks are assimilated with the 3DVAR AROME data assimilation scheme. Data from more than 280 stations over the model domain have been assimilated during 15-day long assimilation cycles prior each of the two studied events. The results of these assimilation cycles show that the assimilation of GPS ZTD with the AROME system performs well in producing analyses closer to the ZTD observations in average. Then the impacts of assimilating GPS data on the precipitation forecast have been evaluated. For the first case, only the AROME runs starting a few hours prior the triggering of the convective system are able to simulate the convective precipitation. The assimilation of GPS ZTD observations improves the simulation of the spatial extent of the precipitation, but slightly underestimates the heaviest precipitation in that case compared with the experiment without GPS. The accuracy of the precipitation forecast for the second case is much better. The analyses from the control assimilation cycle provide already a good description of the atmosphere state that cannot be further improved by the assimilation of GPS observations. Only for the latest day (22 November 2007), significant differences have been found between the two parallel cycles. In that case, the assimilation of GPS ZTD allows to improve the first 6 to 12 hours of the precipitation forecast.
ISSN: 0992-7689

hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847/document
https://hal.archives-ouvertes.fr/hal-00403847/file/angeo-27-2739-2009.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Symbiosis is a widespread phenomenon in the biosphere. In marine benthic environments breakdown of symbiosis is responsible for coral bleaching and dramatically affects coral reef ecosystems functioning [1]. In the water column, planktonic organisms are key component of pelagic ecosystems and a number of species form mutualistic association with microalgae forming a photosymbiosis [2]. Here we intended to investigate the genetic basis of photosymbiosis, through a transcriptomic approach on marine plankton organisms. We focused more specifically on associations occurring between radiolarian host (protist, zooplankton) and dinoflagellates symbiont (protist, phytoplankton) living inside the host cell. It has recently been highlighted that these holobionts are widespread in oligotrophic open oceans and there are also evidences of their fundamental implication in biogeochemical carbon, silica and strontium cycles [3, 4, 5, 6]. RNA-seq technologies allow obtaining an unprecedented amount of data for unicellular organisms isolated from the environment [7]. The study of such non-model holobionts datasets requires de novo assembly, which implies considerable computational resources and the potential production of chimeric sequences [8, 9].We therefore developed an original strategy aiming at accelerating and improving de novo assembly for holobiont datasets. We chose SIMKA [10] a fast kmer-based method initially developed to estimate the similarity between numerous metagenomic datasets, and which has been recently adapted to extract their common sequences. As our symbionts are identified, we used SIMKA to compare our holobionts transcriptomes to publicly available dinoflagellates transcriptomes [11] generating two datasets, one composed of reads from the symbionts and another with reads from the host (for which no reference data are currently available). Independent assemblies were then performed in parallel, accelerating the study process, and minimizing the proportion of resulting chimeric sequences. Our strategy produced a unique and comprehensive genomic dataset for Radiolaria [12, 13], and offers a pragmatic, large scale, comparison strategy to assemble and study holobionts [9]. Our new sequences obtained from holobionts study will be used for phylogenomics investigation, as reference for environmental metagenomic studies and ultimately to understand and characterize the molecular basis of symbiotic relationships in the plankton.Bibliografic references :[1] Simon K. Davy, Denis Allemand, and Virginia M. Weis. “Cell Biology of Cnidarian-Dinoflagellate Symbiosis”. In: Microbiology and Molecular Biology Reviews 76.2 (June 1, 2012), pp. 229–261. issn: 1092-2172, 1098- 5557. doi: 10.1128/MMBR.05014-11.[2] Janouškovec, J. et al. “Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics”. in: PNAS 201614842 (2016). doi:10.1073/pnas.1614842114[3] Tristan Biard et al. “In situ imaging reveals the biomass of giant protists in the global ocean”. In: Nature advance online publication (Apr. 20, 2016). issn: 0028-0836. doi: 10.1038/nature17652.[4] Lionel Guidi et al. “Plankton networks driving carbon export in the olig- otrophic ocean”. In: Nature 532.7600 (Apr. 28, 2016), pp. 465–470. issn: 0028-0836. doi: 10.1038/nature16942.[5] Diane K. Stoecker et al. “Acquired phototrophy in aquatic protists”. In: Aquatic Microbial Ecology 57.3 (Nov. 24, 2009), pp. 279–310. doi: 10.3354/ame01340.[6] Johan Decelle et al. “An original mode of symbiosis in open ocean plankton”. In: Proceedings of the National Academy of Sciences 109.44 (Oct. 30, 2012), pp. 18000–18005. issn: 0027-8424, 1091-6490. doi: 10. 1073/pnas.1212303109.[7] Sergio Balzano et al. “Transcriptome analyses to investigate symbiotic relationships between marine protists”. In: Frontiers in Microbiology 6 (Mar. 17, 2015). issn: 1664-302X. doi: 10.3389/fmicb.2015.00098.[8] Li, B. et al. “Evaluation of de novo transcriptome assemblies from RNA-Seq data”. In: Genome Biology 15, 553 (2014).[9] Sangwan, N., Xia, F. & Gilbert, J. A. “Recovering complete and draft population genomes from metagenome datasets”. In: Microbiome 4, 8 (2016).[10] Gaëtan Benoit et al. “Multiple comparative metagenomics using mul- tiset k -mer counting”. In: PeerJ Computer Science 2 (Nov. 14, 2016). doi: 10.7717/peerj-cs.94.[11] Patrick J. Keeling et al. “The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing”. In: PLOS Biol 12.6 (June 2014), e1001889. issn: 1545-7885. doi: 10.1371/journal.pbio.1001889.[12] Burki, F. et al. “Evolution of Rhizaria: new insights from phylogenomic analysis of uncultured protists”. In BMC Evolutionary Biology 10, 377 (2010).
International Conference on Holobionts
Paris, France

hal-01575069
https://hal.inria.fr/hal-01575069

Résumé : En Guyane comme dans l'ensemble de la région amazonienne, le risque de maladie de Chagas pour l'homme a longtemps été sous estimé du fait de l'absence de vecteur domestique et de l'existence d'un réservoir animal exclusivement sauvage. Le travail présenté répond aux besoins de compléter et d'actualiser les connaissances épidémiologiques disponibles sur la maladie de Chagas dans ce département , en précisant les modalités de circulation de Trypanosoma cruzi et les facteurs impliqués dans le cycle à l'origine des cas humains. Les données cumilées entre 2001 et 2023 représentent 971 spécimens de triatomes. Nous avons choisi de différencier les triatomes provenant des zones non habitées (forêts primaire ou secondaire) de ceux provenant de zones habitées, collectées dans les maisons à la faveur d'intrusion. Une espère, Panstrongylus geniculatus, s'est distinguée par son abondance (61,1%) et son omniprésence dans les différents types de milieux explorés. Au total, neuf espèces ont été retrouvées. En zone non habitée, avec une prédominance de P. geniculatus, P. lignarius, Rhodnius pictipes et R. robustus. L'infection des triatomes par T. cruzi a été étudiée, avec une mise en évidence d'un taux d'infection plus élevé chez les triatomes collectés à l'intérieur des habitations (53.9%) que chez ceux provenant des zones non habitées (46%). L'étude sur les mammifères sauvages a montré des taux d'infection élevés pour T. cruzi chez deux espèces : didelphis marsupialis (62.5%) et Philander opossum (35%). Cette étude a été complétée par l'analyse de la variabilité génétique de T. cruzi identifié par des techniques de génotypage réalisées sur du matériel obtenu à partir de triatomes, de mammifères sauvages et domestiques et des hommes. En zone non habitée trois groupes, TcI, TcII-TcV-TcVI et TcIII-TcIV, ont été caractérisés, avec une prédominance de TcI. Parmi les acteurs du cycle parasite, les chiens et P. geniculatus hébergent le groupe TcIII-TcIV à la différence du genre Rhodnius et des marsupiaux qui hébergent le groupe TcI. Nos résultats ont permis d'émettre un certain nombre d'hypothèses sur la circulation des génotypes de T. cruzi en Guyane
In French Guiana, as in the whole of Amazon region, the risk of Chagas disease to humans has long been underestimated due to the presence of non-domiciled triatomines and wild animal reservoir. Overall, this thesis aims at reactualizing and improving epidemiological knowledge about Chagas disease in French Guiana, by specific modalities of circulation of Trypanosoma cruzi and the factorsinvolved in the transmission cycle of the origin of human cases. Accumulated data, between 2001 and 2013, represent 971 triatomine specimens collected. We chose to differentiate triatomine collected in uninhabited areas (primary or secondary forests) and those frominhabited areas, collected in homes by intrusion. One species, Panstrongylus geniculatus, was distinguished by its abundance (61.1%) and its presence in different types of habitats investigated. A total of nine species were found in uninhabited area, with the predominance of four species: P. geniculatus, P. lignarius, Rhodnius pictipes and Eratyrus mucronatus. In inhabited area, five species of triatomine were collected, with the predominance of P. geniculatus, R. pictipes and R. robustus. The triatomine infection rate with T. cruzi has been studied, with a highlighting of higher rate of infection in triatomine collected inside houses (53.9%) than those from uninhabited area (46%). The study on wild mammals showed high T. cruzi infection rates for two species: Didelphis marsupialis (62.5%) and Philander opossum (35%).This study was completed by the analysis of the genetic variability of T. cruzi identified by genotyping techniques performed on material obtained from triatomine, wild and domestic mammals and humans. In uninhabited area, three groups$ TcI, TcII-TcV-TcVI and TcIII-TcIV have been characterized, with a predominance of TcIII-TcIV group. In inhabited area, only two groups were characterized (TcI andTcIII-TcIV), with a predominance of TcI. Among the actor’s transmission cycle of parasite, dogs and P. geniculatus were characterized by TcIII-TcIV group. Contrary to Rhodnius genus and marsupials were characterized by the TcI group. Our results have allowed issuing a number of assumptions about the circulation of T. cruzi genotypes in French Guiana

http://www.theses.fr/2013AGUY0734/document

Éditeur(s) : HAL CCSD Laboratoire Arago
Résumé : International audience
The analysis of the C-O stable isotope composition of coral reef fish otoliths from Taiaro, a French Polynesian atoll normally isolated from the Pacific Ocean, has been performed to address two main questions. The first is to confirm previous results which suggest that a lagoonal coral reef fish population is able to achieve its ontogenetic cycle without any open ocean phase. If so, are O isotopic values of otoliths an indicator of temperature fluctuations in the tropical Pacific Ocean related to climate change and in particular temperature variations of water masses? δ18O and δ13C values on both lagoon and open ocean fish otoliths caught in 2006 indicated clearly that O-isotopes reached the isotopic equilibrium; in contrast, all δ13C values exhibited a strong isotopic disequilibrium related to metabolic activity. Stable isotope compositions revealed a clear differentiation between fish from lagoons and those from the open ocean (with a δ18O enrichment of 1 ‰ in favour of the lagoon). This confirmed a lack of connectivity between habitats and that fish from lagoon lived their entire life cycle in the lagoon. Both δ18O and δ13C data indicated differences between nucleus and edge signatures with changes in fish behavior from the larval life to adulthood (habitat, diet, etc.), and a clear adaptation of dietary behavior of lagoon fish. The comparison of the 2006 data set with those of 1994 showed that environmental conditions were stable in the lagoon, leading to a very narrow range of variations in the δ18O values. δ18O of fish otoliths of the open ocean exhibited a wider variation (+0.25 ‰) between 1994 and 2006, suggesting a decrease in temperature linked to a change of SST, which can be interpreted in terms of climate change associated with El Nino Southern Oscilation (ENENSO). These differences could also be due to a switch of habitats during the life cycle of fish from the open ocean.
ISSN: 0240-8759

hal-01162477
https://hal-univ-perp.archives-ouvertes.fr/hal-01162477