Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
ISSN: 2072-4292

hal-01429052
https://hal.archives-ouvertes.fr/hal-01429052
DOI : 10.3390/rs4103244

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Sampling design is a key issue when establishing species inventories and characterizing habitats within highly heterogeneous landscapes. Sampling efforts in such environments may be constrained and many field studies only rely on subjective and/or qualitative approaches to design collection strategy. The region of Cacao, in French Guiana, provides an excellent study site to understand the presence and abundance of Anopheles mosquitoes, their species dynamics and the transmission risk of malaria across various environments. We propose an objective methodology to define a stratified sampling design. Following thorough environmental characterization, a factorial analysis of mixed groups allows the data to be reduced and non-collinear principal components to be identified while balancing the influences of the different environmental factors. Such components defined new variables which could then be used in a robust k-means clustering procedure. Then, we identified five clusters that corresponded to our sampling strata and selected sampling sites in each stratum. RESULTS: We validated our method by comparing the species overlap of entomological collections from selected sites and the environmental similarities of the same sites. The Morisita index was significantly correlated (Pearson linear correlation) with environmental similarity based on i) the balanced environmental variable groups considered jointly (p = 0.001) and ii) land cover/use (p-value<0.001). The Jaccard index was significantly correlated with land cover/use-based environmental similarity (p-value = 0.001). CONCLUSIONS: The results validate our sampling approach. Land cover/use maps (based on high spatial resolution satellite images) were shown to be particularly useful when studying the presence, density and diversity of Anopheles mosquitoes at local scales and in very heterogeneous landscapes.
BMC Ecology

pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104/document
DOI : 10.1186/1472-6785-13-45
PUBMED : 24289184

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper deals with image processing. This study takes place in a segmentation process based on texture analysis. We use the multifractal ap-proach to characterize the textures. More precisely we study a particular multi-fractal spectrum called the large deviation spectrum. We consider two statistical methods to numerically compute this spectrum. The resulting spectrum, com-puted by both methods over an image, is a one dimension spectrum. In the scope of this article, we extend these methods in order to obtain a two dimen-sions spectrum which could be assimilated to an image. This 2D spectrum al-lows a local characterization of the image singularities while a 1D spectrum is a global characterization. Moreover, the computation of the spectrum requires the use of a measure. We introduce here a pre processing based on the gradient to improve the measure. We show results on both synthetic and real world images. Finally, we remark that the resulting 2D spectrum is close to the resulting im-age of an edge detection process while edge detection using one dimension spectrum requires post processing methods. This statement will be used for fu-ture works.
SITIS Proceedings
Hammamet, Tunisia

hal-00602273
https://hal.archives-ouvertes.fr/hal-00602273

Éditeur(s) : HAL CCSD
Résumé : National audience
Séminaire du Laboratoire de Mathématiques Informatique et Applications (LAMIA)
Point-à-Pitre, Guadeloupe

hal-00694140
https://hal.archives-ouvertes.fr/hal-00694140

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La zona del sudeste de la provincia de Buenos Aires (Argentina), se vislumbra como territorio fértil para los estudios culturales debido a su densidad histórica, social y patrimonial, en un marco de disímiles condiciones geográficas. Dos ciudades bonaerenses intermedias, Mar del Plata y Tandil, se han destacado por sus procesos de construcciones socio-culturales asociadas al ocio y al turismo. El estudio propuesto abarca la primera mitad del siglo XX para reconocer las transformaciones acontecidas en el hábitat y en el habitar, observando las prácticas sociales y las renovadas relaciones entre cuerpo y espacio que darán lugar a propuestas diferenciadas en relación con la estadía costera o serrana. Para ello se hará hincapié en la lectura de la revista ilustrada Caras y Caretas, en particular, en las imágenes de notas y avisos publicitarios.
The southeast zone of the province of Buenos Aires (Argentina), it is glimpsed as fertile territory for the cultural studies due to its historical, social and heritage density, in a frame of dissimilar geographical conditions. Two intermediate cities, Mar del Plata and Tandil, have been outlined for their processes of sociocultural constructions associated with leisure and tourism. The proposed study includes the first half of the XXth century to recognize the transformations happened in the habitat and the living, observing the social practices and the renewed relations between body and space that will give place to different proposals in relation with the coastal or highland demurrage. For this, it will be emphisized in the reading of the illustrated magazine Caras y Caretas, especially, the images of notes and advertising notices.
La zone du sud-est de la province du Buenos Aires (Argentine) est perçue comme un territoire fertile pour les études culturelles pour des raisons historique, sociale et patrimoniale, avec des conditions géographiques dissemblables. Deux villes intermédiaires, Mar del Plata et Tandil, se distinguent par leur processus de construction socioculturelle associée aux loisirs et au tourisme. L'étude proposée concerne la première moitié du XXe siècle. Elle s’attache à reconnaître les transformations des habitats et des modes de vie, en observant les pratiques sociales et les relations renouvelées entre le corps et l'espace en relation avec l’environnement du lieu de séjour, côtier ou montagnard. Pour cela, on mettra l'accent sur la lecture de la revue illustrée Caras y Caretas, en particulier les illustrations et les avis publicitaires.
Argentine
Buenos Aires
Mar del Plata
Tandil

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7626
http://journals.openedition.org/etudescaribeennes/7626

Éditeur(s) : HAL CCSD
Résumé : International audience
MOTIVATION: Imaging mass spectrometry (IMS) is a maturating technique of molecular imaging. Confidence in the reproducible quality of IMS data is essential for its integration into routine use. However, the predominant method for assessing quality is visual examination, a time consuming, unstandardized and non-scalable approach. So far, the problem of assessing the quality has only been marginally addressed and existing measures do not account for the spatial information of IMS data. Importantly, no approach exists for unbiased evaluation of potential quality measures. RESULTS: We propose a novel approach for evaluating potential measures by creating a gold-standard set using collective expert judgements upon which we evaluated image-based measures. To produce a gold standard, we engaged 80 IMS experts, each to rate the relative quality between 52 pairs of ion images from MALDI-TOF IMS datasets of rat brain coronal sections. Experts' optional feedback on their expertise, the task and the survey showed that (i) they had diverse backgrounds and sufficient expertise, (ii) the task was properly understood, and (iii) the survey was comprehensible. A moderate inter-rater agreement was achieved with Krippendorff's alpha of 0.5. A gold-standard set of 634 pairs of images with accompanying ratings was constructed and showed a high agreement of 0.85. Eight families of potential measures with a range of parameters and statistical descriptors, giving 143 in total, were evaluated. Both signal-to-noise and spatial chaos-based measures performed highly with a correlation of 0.7 to 0.9 with the gold standard ratings. Moreover, we showed that a composite measure with the linear coefficients (trained on the gold standard with regularized least squares optimization and lasso) showed a strong linear correlation of 0.94 and an accuracy of 0.98 in predicting which image in a pair was of higher quality. AVAILABILITY AND IMPLEMENTATION: The anonymized data collected from the survey and the Matlab source code for data processing can be found at: https://github.com/alexandrovteam/IMS_quality. CONTACT: theodore.alexandrov@embl.de
Bioinformatics (Oxford, England)

hal-01163754
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01163754
DOI : 10.1093/bioinformatics/btv266
PUBMED : 26072506

Éditeur(s) : HAL CCSD CNRS-Editions
Résumé : Toute l'histoire des techniques de communication est intimement liée à l'histoire de l'éducation. Avant le cahier, la craie et le tableau, on savait, dans l'antiquité, recourir à diverses techniques pour construire des dispositifs socio-techniques susceptibles de faciliter l'apprentissage (Marrou, 1948). Les possibilités offertes par l'image et ses moyens successifs de diffusion ont été de même fondamentales dans la diffusion des connaissances. Ce fut d'abord l'image artisanale (vitraux et enluminures utilisés pour l'édification...). Puis l'image imprimée dès le début du seizième siècle (planches, éclatés, cartes...) et l'image projetée (de la lanterne magique aux diapositives). A partir du vingtième siècle, l'image audiovisuelle et la production industrielle (photographie, radio, cinéma, télévision...) ont croisé les systèmes éducatifs comme l'ont fait depuis une vingtaine d'années les techniques de numérisation des documents (sonores, iconiques et graphiques), les logiciels d'apprentissage, de simulation et de production, la transmission à travers des réseaux numériques, et les nouvelles formes de documents informatisés (hypertexte, écrit sur écran...)...
ISSN: 0767-9513

Droits : info:eu-repo/semantics/OpenAccess
edutice-00001307
https://edutice.archives-ouvertes.fr/edutice-00001307
https://edutice.archives-ouvertes.fr/edutice-00001307/document
https://edutice.archives-ouvertes.fr/edutice-00001307/file/hermes_SIC.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Several studies, both theoretical and experimental, show that sedimentary rocks have a fractal pore-grain interface. In this paper a computer simulated 3-D sedimentary rock structure generated by the Relaxed Ballistic Bidisperse Deposition Model (RBBDM), is investigated to characterize the micro structure of its pores. The pore volume and the rock-pore interface show the same fractal dimension indicating that the pore volume is a fractal. The two point density correlation is computed for the pore space and the results compare favourably with the range reported from experiments. An array of 2-D X-ray tomography micrograph sections of a real sedimentary rock, an oolitic limestone (pure calcite) from the Mondeville formation of Middle Jurassic age (Paris Basin, France), was used to generate a 3-D bitmap. The 3-D real rock sample generated in this manner, was analysed for similar studies as the simulated structure. The results were compared with those obtained from simulation. The simulation results agree qualitatively with the real rock sample. Diffusion through the connected pore space of the simulated structure was studied using a random walk algorithm and the results compared with the similar simulation study done on the 3-D oolitic limestone specimen. In both cases diffusion was found to be anomalous indicating that the sedimentary rock has a fractal geometry. The favourable comparability of results between the simulated and real rock supports the usefulness of the model of sedimentary rock generation which can be applicable to transport phenomena.
ISSN: 0956-540X

hal-00823061
https://hal.archives-ouvertes.fr/hal-00823061
DOI : 10.1093/gji/ggs084

Résumé : Water was applied to the limestone and was absorbed by the etched sect-ions of the stone. When applied, printing ink for that color adhered only to the image on the stone. Damp paper from the proof book was then pressed to the stone and an image was produced in the color represented by that stone. The same process was repeated for each color in the design (as many as 13 colors were used), the lithographer carefully registering the same piece of paper on each separate stone. Each separate color used in the image required its own stone!
(Funding) Funded in part by the Institute for Museum and Library Services (IMLS), Ephemeral Cities Project.
Tampa |z 1271000 |2 ceeus
Hillsborough County |z 12057 |2 ceeus
United States of America -- Florida -- Hillsborough County -- Tampa

Droits : All rights reserved. 2005.
C24-05663

Éditeur(s) : HAL CCSD Springer
Résumé : Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012
International audience
Universal Nearest Neighbours (unn) is a classifier recently proposed, which can also effectively estimates the posterior probability of each classification act. This algorithm, intrinsically binary, requires the use of a decomposition method to cope with multiclass problems, thus reducing their complexity in less complex binary subtasks. Then, a reconstruction rule provides the final classification. In this paper we show that the application of unn algorithm in conjunction with a reconstruction rule based on the posterior probabilities provides a classification scheme robust among different biomedical image datasets. To this aim, we compare unn performance with those achieved by Support Vector Machine with two different kernels and by a k Nearest Neighbours classifier, and applying two different reconstruction rules for each of the aforementioned classification paradigms. The results on one private and five public biomedical datasets show satisfactory performance.
Machine Learning in Medical Imaging
Nice, France

hal-00958909
https://hal.archives-ouvertes.fr/hal-00958909
https://hal.archives-ouvertes.fr/hal-00958909/document
https://hal.archives-ouvertes.fr/hal-00958909/file/Miccai.pdf
DOI : 10.1007/978-3-642-35428-1_15

Éditeur(s) : HAL CCSD
Résumé : In Taiwan , the subduction of the Chinese continental margin under the Luzon arc results in the progressive growth of an active orogenic wedge. It is one of the best places to study the complex relationships that occurs between the tectonic processes controlling deformation (plate rheology and kinematics, metamorphism and magmatism) and surface processes (erosion and sedimentation). In order to study the kinematics of the present day convergence of Philippine Sea plate to the Asian continent around Taiwan, we perform 2D and 3D sandbox modeling and we analyzed the models with PIV (Particle Image Velocimetry) software. In 2D experiments, a model Coulomb wedge is submitted to erosion and sedimentation under topography and flux steady state conditions. The 3D experiments are mainly used to study the escape tectonics occurring in the middle west and southwest Taiwan. A wedge shaped indenter and a basement relief were used to simulate the mechanical plate boundary between Philippine Sea plate and Eurasia plate and the basement topography to the west of Taiwan respectively. We examine the exhumation patterns, the mode of fault propagation and displacement patterns by strain partitioning of vertical vs. horizontal displacement and convergent parallel vs. orogen parallel components. The preliminary conclusions are: 1. The interactions between tectonics, erosion and sedimentation control geometry and kinematics of the doubly vergent transpressional orogen. 2. Exhumation processes are controlled by the balance between erosion, frontal accretion and underplating in different structural domains of the wedge. 3. Retrowedge erosion favorites backfolding and backthrusting, induces flower structures and fan shaped cleavage distribution. 4. Sedimentation promotes underplating and out-of sequences thrusting. 5. Continental subduction or subduction of topographic highs will enhance underthrusting/underplating, thick-skin tectonics and inversion of sedimentary basin.
Bolletino di Geofisica teorica ed applicata

hal-00411133
https://hal.archives-ouvertes.fr/hal-00411133

Éditeur(s) : Université de Bretagne Occidentale
Résumé : Study of mineral suspended particulate matter (SPM) is essential to understand ecosystem dynamics. SPM influences light penetration which is closely related to primary production and carries pollutants and nutrients within the water masses. This work aims to study near-surface mineral SPM dynamics in the English Channel using two complementary methods: remote-sensing by satellites and numerical modelling. Firstly, MODIS and MERIS satellite images processed by the IFREMER semi-analytical algorithm and describing non-algal SPM, are analysed to build three statistical models which are able to estimate near-surface SPM using simple variables, e.g., tidal coefficient, significant wave height and mean chlorophyll-a concentration. Secondly, the three-dimensional hydrosedimentary model ROMS (Regional Ocean Modeling System) is applied in the English Channel. It considers tidal forcing along open boundaries, wind stress at the sea-surface, wave-current interactions in the bottom boundary layer and realistic heterogeneous bottom sediments. Results of the more sophisticated statistical model is also used to impose SPM concentrations at open boundaries. Sensitivity tests on SPM boundary conditions show the importance of prescribing realistic sediment concentrations to improve the model predictions. Biological influences on mineral SPM are also tested using settling velocity and critical shear stress for erosion which vary with seasons. Both statistical and numerical models highlight and locate respective influences of tide, waves and biology on mineral SPM. Numerical predictions indicate that near-surface SPM is mainly composed of silts (>70%). Near-surface suspended silts come largely from seabed resuspension alongshore in the Eastern Channel and from the open boundaries of our limited-area coastal model at the West of Cotentin Peninsula and offshore. Near-surface SPM variations are investigated at semi-diurnal, neap-spring tidal cycle time scales and during a wave event. Finally, dynamics of sediments in the turbidity maximum zone around the Isle of Wight is examined depending on hydrodynamical conditions in order to distinguish the role played by advection and local erosion/settling processes in this area. Keywords: Suspended particulate matter, satellite, remote-sensing, modelling, English Channel, sediments, turbidity, tide, wave
L'étude des matières en suspension (MES) minérales est essentielle pour comprendre le fonctionnement des écosystèmes en Manche : les MES influencent la pénétration de la lumière dans la colonne d'eau, paramètre clé pour la production biologique, et sont susceptibles de transporter des polluants et nutriments. Lors de ce travail, la dynamique des MES minérales de surface en Manche est étudiée à l'aide de deux méthodes complémentaires : l'observation par satellite et la modélisation numérique tridimensionnelle. Dans un premier temps, les images satellite MODIS et MERIS, traitées par l'algorithme semi-analytique développé par l'IFREMER et représentant les MES non-algales de surface, sont analysées afin d'élaborer trois modèles statistiques permettant d'estimer la MES de surface en fonction de variables basiques telles que le coefficient de marée, la hauteur significative des vagues et la concentration moyenne en chlorophylle-a. Dans un deuxième temps, le modèle hydrosédimentaire multiclasse tridimensionnel ROMS (Regional Ocean Modeling System) est implémenté en Manche. Il prend en considération le forçage par la marée aux frontières ouvertes, la contrainte exercée par le vent à la surface de la mer, l'interaction houle-courant en couche limite de fond et l’hétérogénéité spatiale réaliste du lit sédimentaire. Les résultats du modèle statistique le plus sophistiqué sont également utilisés pour forcer la concentration en MES aux frontières ouvertes du domaine de calcul. Des tests de sensibilité sur les conditions limites montrent l'importance de considérer de manière réaliste les sédiments entrant en Manche par les frontières ouvertes lors de la modélisation numérique. L'influence de la biologie sur les MES minérales est testée en utilisant une formulation de la vitesse de chute et de la contrainte critique d'érosion variant saisonnièrement. Grâce à ces deux outils associés, les influences respectives de la marée, de la houle et de la biologie sur les MES minérales sont mises en avant et localisées en Manche. Le modèle numérique prédit que les MES de surface sont composées principalement de silts (>70%). Les silts en suspension en surface proviennent majoritairement du lit sédimentaire près des côtes en Manche orientale et des frontières ouvertes du domaine de calcul à l'ouest de la presqu'île du Cotentin et au large en Manche centrale et orientale. Les variations des MES de surface sont ensuite étudiées aux échelles des cycles de marée semi-diurnes, vive-eau/morte-eau et autour d'un épisode de houles. Enfin, l'évolution de la concentration de sédiments dans la zone de forte turbidité autour de l'île de Wight peut être analysée suivant les conditions hydrodynamiques afin d'évaluer les rôles respectifs des processus locaux d'érosion/dépot et d'advection dans la génération de ces turbidités remarquables. Mots-clés : Matière en suspension, télédétection, satellite, modélisation, Manche, sédiments, turbidité, marée, houle

Droits : 2013 UBO
http://archimer.ifremer.fr/doc/00157/26783/24884.pdf
http://archimer.ifremer.fr/doc/00157/26783/

Éditeur(s) : HAL CCSD
Résumé : International audience
https://hal.archives-ouvertes.fr/hal-01436542

hal-01436542
https://hal.archives-ouvertes.fr/hal-01436542
DOI : 10.1109/IGARSS.2011.6049595

Éditeur(s) : HAL CCSD IEEE
Résumé : International audience
Recent works display that large scale image classification problems rule out computationally demanding methods. On such problems, simple approaches like k-NN are affordable contenders, with still room space for statistical improvements under the algorithmic constraints. A recent work showed how to leverage k-NN to yield a formal boosting algorithm. This method, however, has numerical issues that make it not suited for large scale problems. We propose here an Adaptive Newton-Raphson scheme to leverage k-NN, N³, which does not suffer these issues. We show that it is a boosting algorithm, with several key algorithmic and statistical properties. In particular, it may be sufficient to boost a subsample to reach desired bounds for the loss at hand in the boosting framework. Experiments are provided on the SUN, and Caltech databases. They confirm that boosting a subsample -- sometimes containing few examples only -- is sufficient to reach the convergence regime of N³. Under such conditions, N³ challenges the accuracy of contenders with lower computational cost and lower memory requirement.
IEEE International Workshop on Machine Learning for Signal Processing
Southampton, United Kingdom

hal-00959125
https://hal.archives-ouvertes.fr/hal-00959125
https://hal.archives-ouvertes.fr/hal-00959125/document
https://hal.archives-ouvertes.fr/hal-00959125/file/BNNB_mlsp2013.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
The k-nearest neighbors (k-NN) classification rule is still an essential tool for computer vision applications, such as scene recognition. However, k-NN still features some major drawbacks, which mainly reside in the uniform voting among the nearest prototypes in the feature space. In this paper, we propose a new method that is able to learn the "relevance" of prototypes, thus classifying test data using a weighted k-NN rule. In particular, our algorithm, called Multi-class Leveraged k-nearest neighbor (MLNN), learns the prototype weights in a boosting framework, by minimizing a surrogate exponential risk over training data. We propose two main contributions for improving computational speed and accuracy. On the one hand, we implement learning in an inherently multiclass way, thus providing significant computation time reduction over one-versus-all approaches. Furthermore, the leveraging weights enable effective data selection, thus reducing the cost of k-NN search at classification time. On the other hand, we propose a kernel generalization of our approach to take into account real-valued similarities between data in the feature space, thus enabling more accurate estimation of the local class density. We tested MLNN on three datasets of natural images. Results show that MLNN significantly outperforms classic k-NN and weighted k-NN voting. Furthermore, using an adaptive Gaussian kernel provides significant performance improvement. Finally, the best results are obtained when using MLNN with an appropriate learned metric distance.
Proceedings of the 10th Asian Conference on Computer Vision, ACCV 2010, November 8-12, 2010, Queenstown, New Zealand
Queenstown, New Zealand

hal-00664606
https://hal.inria.fr/hal-00664606
https://hal.inria.fr/hal-00664606/document
https://hal.inria.fr/hal-00664606/file/mlnn_accvfinal.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Rifting in a cratonic lithosphere is strongly controlled by several interacting processes including crust/mantle rheology, magmatism, inherited structure and stress regime. In order to better understand how these physical parameters interact, a 2 yr long seismological experiment has been carried out in the North Tanzanian Divergence (NTD), at the southern tip of the eastern magmatic branch of the East African rift, where the southward-propagating continental rift is at its earliest stage. We analyse teleseismic data from 38 broad-band stations ca. 25 km spaced and present here results from their receiver function (RF) analysis. The crustal thickness and Vp/Vs ratio are retrieved over a ca. 200 × 200 km2 area encompassing the South Kenya magmatic rift, the NTD and the Ngorongoro-Kilimanjaro transverse volcanic chain. Cratonic nature of the lithosphere is clearly evinced through thick (up to ca. 40 km) homogeneous crust beneath the rift shoulders. Where rifting is present, Moho rises up to 27 km depth and the crust is strongly layered with clear velocity contrasts in the RF signal. The Vp/Vs ratio reaches its highest values (ca. 1.9) beneath volcanic edifices location and thinner crust, advocating for melting within the crust. We also clearly identify two major low-velocity zones (LVZs) within the NTD, one in the lower crust and the second in the upper part of the mantle. The first one starts at 15–18 km depth and correlates well with recent tomographic models. This LVZ does not always coexist with high Vp/Vs ratio, pleading for a supplementary source of velocity decrease, such as temperature or composition. At a greater depth of ca. 60 km, a mid-lithospheric discontinuity roughly mimics the step-like and symmetrically outward-dipping geometry of the Moho but with a more slanting direction (NE–SW) compared to the NS rift. By comparison with synthetic RF, we estimate the associated velocity reduction to be 8–9 per cent. We relate this interface to melt ponding, possibly favouring here deformation process such as grain-boundary sliding (EAGBS) due to lithospheric strain. Its geometry might have been controlled by inherited lithospheric fabrics and heterogeneous upper mantle structure. We evidence that crustal and mantle magmatic processes represent first order mechanisms to ease and locate the deformation during the first stage of a cratonic lithospheric breakup.
ISSN: 0956-540X

hal-01622078
https://hal.archives-ouvertes.fr/hal-01622078
https://hal.archives-ouvertes.fr/hal-01622078/document
https://hal.archives-ouvertes.fr/hal-01622078/file/plasmanGJI2017.pdf
DOI : 10.1093/gji/ggx177

Éditeur(s) : HAL CCSD
Résumé : International audience
Background In life sciences, there is a growing need for new informatics tools designed to provide automated solutions in order to analyze big amounts of images obtained from high-throughput imaging systems. Among the most widely used assays in neurotoxicity, endocrinology and brain diseases, the neurite outgrowth assay is popular. New method Cell-to-cell quantification of the main morphological features of neurite outgrowth assays remains very challenging. Here, we provide a new pipeline developed on Fiji software for analysis of series of two-dimensional images. It allows the automated analysis of most of these features. Results We tested the accuracy and usefulness of the software by confirming the effects of estradiol and hypoxia on in vitro neuronal differentiation, previously published by different authors with manual analysis methods. With this new method, we highlighted original interesting data. Comparison with existing method(s) The innovation brought by this plugin lies in the fact that it can process multiple images at the same time, in order to obtain: the number of nuclei, the number of neurites, the length of neurites, the number of neurites junctions, the number of neurites branches, the length of each branch, the position of the branch in the image, the angle of each branch, but also the area of each cell and the number of neurites per cell. Conclusions This plugin is easy to use, highly sensitive, and allows the experimenter to acquire ready-to-use data coming from a vast amount of images. © 2016 Elsevier B.V.
Journal of Neuroscience Methods

hal-01367152
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367152
DOI : 10.1016/j.jneumeth.2016.07.011
PUBMED : 27450924

Éditeur(s) : HAL CCSD
Résumé : International audience
Colloque Télédétection de Outils Mathématiques pour le Développement Durable (TOMaADD)
Cayenne, French Guiana

hal-01313396
https://hal.archives-ouvertes.fr/hal-01313396

Éditeur(s) : HAL CCSD
Résumé : The research presented in this thesis aims at determining the possibility of partial or total automatic ship detection in High Resolution optical satellite images. At first, we expose the industrial context of our study, which fixes the constraints in terms of performances and processing time. Then, we present the available satellite data for our study (SPOT 5 panchromatic images of 5m per pixel resolution). Then we detail our approach for ship detection : the first stage is a pre-detection of targets that gives us candidates. The second stage is a precise segmentation of each candidate and the third stage is a classification of candidates. Our pre-detection method is based on the Bayesian decision theory. This pre-detection supplies a set of regions of interests (ROI). Among them, we have ships, but also false alarms due to clouds and to crests of waves. The purpose of the following stage is to eliminate the false alarms and to characterize the pre-detected ships. Then, we detail the method used to segment candidates. It uses active contours and also uses the Bayesian decision theory. After a brief description of the characteristics extracted for the classication of ships, we present the classifier that we used. We complete the ship characterization by presenting two methods of wave ship detection. The first approach uses active contours and the second is based on an a contrario approach. We compare the results of these two approaches. To complete the study and replace it in the industrial and operational context, we present experiments of the complete algorithm on complete images to estimate the performances and the processing time of the whole method.
Les travaux présentés dans cette thèse ont pour but de déterminer la possibilité d'automatiser, partiellement ou totalement, la détection de bateaux à partir d'images satellitaires optiques haute résolution. Nous exposons tout d'abord le contexte industriel dans lequelle s'insère notre étude, qui fixe les contraintes en termes de performances et de temps de traitement. Puis, nous présentons les données satellitaires disponibles dans le cadre de notre étude (images SPOT 5 panchromatique de résolution 5m). Après avoir illustré le contenu des scènes, nous présentons la démarche adoptée pour la détection des navires : une phase de pré-détection suivie d'une étape de segmentation et d'une étape de classification. La méthode de pré-détection utilisée s'appuie sur la théorie bayésienne de la décision. Après avoir présenté le modèle classique, nous discutons du modèle que nous avons utilisé. Cette pré-détection fournit un ensemble de régions d'intérêts. Parmi elles, nous n'avons pas uniquement des bateaux, nous avons également des fausses alarmes dues aux nuages et aux crêtes de vagues. Le but de l'étape suivante est à la fois d'éliminer les fausses alarmes et de caractériser les bateaux pré-détectés. Ensuite, nous détaillons la méthode utilisée pour segmenter les bateaux. Elle s'appuie sur des contours actifs et utilise également la théorie bayésienne de la décision. Après avoir décrit les caractéristiques extraites pour la classification des bateaux, nous présentons le classifieur utilisé. Nous complétons la caractérisation des navires en présentant deux méthodes de détection des sillages différentes des méthodes classiques. La première approche s'appuie sur l'utilisation de contours actifs et la seconde est basée sur une approche a contrario. Nous comparons les résultats des ces deux approches. An de compléter l'étude et se replacer dans le contexte industriel et opérationnel de la thèse, nous présentons des expérimentations de l'ensemble de l'algorithme sur des images complètes pour évaluer les performances et le temps de traitement.
https://tel.archives-ouvertes.fr/tel-00560119

tel-00560119
https://tel.archives-ouvertes.fr/tel-00560119
https://tel.archives-ouvertes.fr/tel-00560119/document
https://tel.archives-ouvertes.fr/tel-00560119/file/These_NadiaProia_Version_Finale.pdf

Éditeur(s) : HAL CCSD Lambert Academic Publishing
Résumé : The Himalaya-Tibet system is considered as the classical case of continental collision. Nonetheless, some fundamental questions concerning its structure, as well as physical processes influencing its evolution are still pending. This book presents several advances in the subject matter. Based on new high-resolution geophysical data from the field, combined with robust imaging techniques, the structure of the collision is revealed in detail: the underplating of India beneath half of Tibet, as well as the geometry of the surface along which this happens. Various numerical modelling techniques allow to discuss physical processes at work in the collision zone, such as the rheology of the India plate whose strong mantle supports the Himalayas, or the metamorphic reactions at depth emphasizing the role of water. We recommend this book to Earth Scientists in a broader sense. While specialists in seismology or modelling can thumb technical details, all Readers can get an interdisciplinary overview of mountain building in the Himalayas, with a retrospective outlook on early day explorers and the dawn of some classical geological principles.
https://hal.archives-ouvertes.fr/hal-00854592

ISBN : 978-3838323534
hal-00854592
https://hal.archives-ouvertes.fr/hal-00854592