Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We present in this study the first data on Ra isotopes, 222Rn, and 210Pb in waters from the Lez karst system, one of the main ground-water resources in the South of France. The low Ra isotope activities of the Lez system waters (from 0.35 to 3.45 mBq/L of 226Ra) were measured by gamma spectrometry using the method developed in our previous work. Our data reveal the coherent behavior of 226Ra in Lez spring waters, well correlated to other major and trace elements, like Cl, Na, K, Mg, Li, Rb and Ba. The (228Ra/226Ra) ratios are distinct between the Lez spring (0.60 to 0.72) and two neighboring springs (0.52 to 0.65), showing the spatial variability in karst systems. In spite of their small variations in the Lez spring, it was possible to trace different water components and mixing processes from Lower-Cretaceous, Upper-Jurassic and Middle Jurassic end-members, in agreement with previous studies based on major and trace elements. Data obtained on waters derived from the Upper-Jurassic karst reveal that their (228Ra/226Ra) ratios are not related to the Th/U ratio of the Jurassic limestone, but are rather influenced by the soil and alterite cover of the recharge area.222Rn activities in the Lez spring are relatively low (0.5 to 3.7 Bq/L) compared to other karst regions. The highest 222Rn activities are found in diluted waters following heavy rainfall episodes, suggesting a subsurface origin of Rn. Soil and alterite samples that have much higher 226Ra activities (from 51 to 130 Bq/kg), compared to those from the main aquifer rocks (from 2.9 to 16 Bq/kg), are probably the main source of Rn, rather than the rocks of the karst itself. The study of several flood episodes reveals the correlation between Rn peak-values or total activity discharged at the spring with cumulative rainfall. Finally, 222Rn dissolved in water decays to 210Pb, and our data show that constraints on transfer times of underground waters can potentially be obtained from their coupled measurement.
ISSN: 0009-2541

hal-01622749
https://hal.archives-ouvertes.fr/hal-01622749
DOI : 10.1016/j.chemgeo.2017.06.022

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
On the Gulf of Lions margin, the Messinian Salinity Crisis (MSC) event led to a significant and widespread erosion of the Miocene shelf and slope. It is thus difficult nowadays to restore the morphology of the margin at the beginning of the crisis, and to study the Middle-Upper Miocene series rarely preserved from erosion. In this study, thanks to the use of multichannel seismic reflection data from the Gulf of Lions western slope, it has been possible to image the Miocene slope deposits. Interpretation of the data reveals several diachronic sediment bodies just beneath the Miocene/Pliocene boundary. These bodies are related to slope erosional-depositional complexes, underlain by erosional unconformities outlined by seismic reflector truncations. They are V- or U-shaped in cross section. Over their mapped extent, these bodies are typically 8-12 km wide and incise up to 600 ms TWTT into the Miocene slope deposits. in plan view, they are roughly elongated NW-SE, perpendicularly to the present day shelf break, and they progressively migrate towards the South-East. We interpret these seismic bodies as buried Miocene submarine canyons pre-dating the dramatic drawdown related to the MSC. In this study we try to constrain their age, and we discuss the events that may be at their origin. We also discuss the long-term impact of these slope canyons on the evolution of the margin.
ISSN: 0264-8172

hal-00411546
https://hal.archives-ouvertes.fr/hal-00411546
DOI : 10.1016/j.marpetgeo.2008.04.006

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Correlations between major and minor transition elements in tectonically emplaced orogenic peridotites have been ascribed to variable degrees of melt extraction and melt–rock reaction processes, leading to depletion or refertilization. To elucidate how such processes are recorded in the subcontinental lithospheric mantle, we processed a large geochemical dataset for peridotites from the four tectono-metamorphic domains of the Beni Bousera orogenic massif (Rif Belt, northern Morocco). Our study reveals that variations in bulk-rock major and minor elements, Mg-number and modal mineralogy of lherzolites, as well as their clinopyroxene trace element compositions, are inconsistent with simple partial melting and mainly resulted from different reactions between melts and depleted peridotites. Up to 30% melting at < 3 GPa and cryptic metasomatism can account for the geochemical variations of most harzburgites. In Grt–Sp mylonites, melting and melt–rock reactions are masked by tectonic mixing with garnet pyroxenites and subsolidus re-equilibration. In the rest of the massif, lherzolites were mostly produced by refertilization of a refractory protolith (Mg-number ∼ 91, Ol ∼ 70%, Cpx/Opx = 0·4) via two distinct near-solidus, melt–rock reactions: (1) clinopyroxene and orthopyroxene precipitation and olivine consumption at melt/rock ratios <0·75 and variable mass ratio between crystallized minerals and infiltrated melt (R), which are recorded fairly homogeneously throughout the massif; (2) dissolution of orthopyroxene and precipitation of clinopyroxene and olivine at melt/rock ratios ≤1 and R = 0·2–0·3, which affected mainly the Ariègite–Seiland and Seiland domains. The distribution of secondary lherzolites in the massif suggests that the first refertilization reaction occurred prior to the differentiation of the Beni Bousera mantle section into petro-structural zones, whereas the second reaction was associated with the development of the tectono-metamorphic domains. Our data support a secondary, refertilization-related origin for most lherzolites in orogenic peridotite massifs.
ISSN: 0022-3530

hal-01526901
https://hal.archives-ouvertes.fr/hal-01526901
DOI : 10.1093/petrology/egx003

Éditeur(s) : Ieee-inst Electrical Electronics Engineers Inc
Résumé : The synthetic aperture radar (SAR) Doppler centroid has been used to estimate the scatter line-of-sight radar velocity. In weak to moderate ocean surface current environment, the SAR Doppler centroid is dominated by the directionality and strength of wave-induced ocean surface displacements. In this paper, we show how this sea state signature can be used to improve surface wind retrieval from SAR. Doppler shifts of C-band radar return signals from the ocean are thoroughly investigated by colocating wind measurements from the ASCAT scatterometer with Doppler centroid anomalies retrieved from Envisat ASAR. An empirical geophysical model function (CDOP) is derived, predicting Doppler shifts at both VV and HH polarization as function of wind speed, radar incidence angle, and wind direction with respect to radar look direction. This function is used into a Bayesian inversion scheme in combination with wind from a priori forecast model and the normalized radar cross section (NRCS). The benefit of Doppler for SAR wind retrieval is shown in complex meteorological situations such as atmospheric fronts or low pressure systems. Using in situ information, validation reveals that this method helps to improve the wind direction retrieval. Uncertainty of the calibration of Doppler shift from Envisat ASAR hampers the inversion scheme in cases where NRCS and model wind are accurate and in close agreement. The method is however very promising with respect of future SAR missions, in particular Sentinel-1, where the Doppler centroid anomaly will be more robustly retrieved.
Ieee Transactions On Geoscience And Remote Sensing (0196-2892) (Ieee-inst Electrical Electronics Engineers Inc), 2012-07 , Vol. 50 , N. 7 , P. 2901-2909

Droits : 2012 IEEE
http://archimer.ifremer.fr/doc/00088/19896/17554.pdf
DOI:10.1109/TGRS.2011.2174998
http://archimer.ifremer.fr/doc/00088/19896/

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
[1] Zircons and monazites from 6 samples of the North Ayilari dextral shear zone (NAsz), part of the Karakorum fault zone (KFZ), have been dated with the U-Th-Pb method, using both ID-TIMS and SIMS techniques. The ages reveal (1) inheritance from several events spanning a long period between the late Archean and the Jurassic; (2) an Eocene-Oligocene magmatic event (similar to 35-32 Ma); (3) an Oligo-Miocene magmatic event (similar to 25-22 Ma), at least partly synkinematic to the right-lateral deformation; and (4) a period of metamorphism metasomatism (similar to 22-14 Ma) interpreted as thermal and fluid advection in the shear zone. The Labhar Kangri granite located similar to 375 km farther Southeast along the KFZ is dated at 21.1 +/- 0.3 Ma. Such occurrence of several Oligo-Miocene granites along the KFZ, some of which show evidence for synkinematic emplacement, suggests that the fault zone played an important role in the genesis and /or collection of crustal melts. We discuss several scenarios for the onset and propagation of the KFZ, and offset estimates based on the main sutures zones. Our preferred scenario is an Oligo-Miocene initiation of the fault close to the NA range, and propagation along most of its length prior to similar to 19 Ma. In its southern half, the averaged long-term fault-rate of the KFZ is greater than 8 to 10 mm/a, in good agreement with some shorter-term estimates based on the Indus river course, or Quaternary moraines and geodesy. Our results show the KFZ cannot be considered as a small transient fault but played a major role in the collision history.
ISSN: 0278-7407

hal-00412570
https://hal.archives-ouvertes.fr/hal-00412570
DOI : 10.1029/2007TC002184

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
The origin of replication complex subunit ORC1 is important for DNA replication. The gene is known to encode a meiotic transcript isoform (mORC1) with an extended 5′-untranslated region (5′-UTR), which was predicted to inhibit protein translation. However, the regulatory mechanism that controls the mORC1 transcript isoform is unknown and no molecular biological evidence for a role of mORC1 in negatively regulating Orc1 protein during gametogenesis is available. By interpreting RNA profiling data obtained with growing and sporulating diploid cells, mitotic haploid cells, and a starving diploid control strain, we determined that mORC1 is a middle meiotic transcript isoform. Regulatory motif predictions and genetic experiments reveal that the activator Ndt80 and its middle sporulation element (MSE) target motif are required for the full induction of mORC1 and the divergently transcribed meiotic SMA2 locus. Furthermore, we find that the MSE-binding negative regulator Sum1 represses both mORC1 and SMA2 during mitotic growth. Finally, we demonstrate that an MSE deletion strain, which cannot induce mORC1, contains abnormally high Orc1 levels during post-meiotic stages of gametogenesis. Our results reveal the regulatory mechanism that controls mORC1, highlighting a novel developmental stage-specific role for the MSE element in bi-directional mORC1/SMA2 gene activation, and correlating mORC1 induction with declining Orc1 protein levels. Because eukaryotic genes frequently encode multiple transcripts possessing 5′-UTRs of variable length, our results are likely relevant for gene expression during development and disease in higher eukaryotes. © 2016 Taylor & Francis Group, LLC.
ISSN: 1547-6286

hal-01367153
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367153
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367153/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367153/file/Ndt80%20activates%20the%20meiotic%20ORC1%20transcript.pdf
PUBMEDCENTRAL : PMC5013992

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The formation of ovarian follicles is a finely tuned process that takes place within a narrow time-window in rodents. Multiple factors and pathways have been proposed to contribute to the mechanisms triggering this process but the role of endocrine factors, especially estrogens, remains elusive. It is currently hypothesized that removal from the maternal hormonal environment permits follicle formation at birth. However, experimentally-induced maintenance of high 17β-estradiol (E2) levels leads to subtle, distinct, immediate effects on follicle formation and oocyte survival depending on the species and dose. In this study, we examined the immediate effects of neonatal E2 exposure from post-natal day (PND) 0 to PND2 on the whole organism and on ovarian follicle formation in rats. Measurements of plasma E2, estrone and their sulfate conjugates after E2 exposure showed that neonatal female rats rapidly acquire the capability to metabolize and clear excessive E2 levels. Concomitant modifications to the mRNA content of genes encoding selected E2 metabolism enzymes in the liver and the ovary in response to E2 exposure indicate that E2 may modify the neonatal maturation of these organs. In the liver, E2 treatment was associated with lower acquisition of the capability to metabolize E2. In the ovary, E2 depleted the oocyte pool in a dose dependent manner by PND3. In 10 µg/day E2-treated ovaries, apoptotic oocytes were observed in newly formed follicles in addition to areas of ovarian cord remodeling. At PND6, follicles without any visible oocyte were present and multi-oocyte follicles were not observed. Our study reveals a major species-difference. Indeed, neonatal exposure to E2 depletes the oocyte pool in the rat ovary, whereas in the mouse it is well known to increase oocyte survival.
ISSN: 1932-6203

hal-00936582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00936582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00936582/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00936582/file/Systemic_Compensatory_Response-accepted.pdf
DOI : 10.1371/journal.pone.0082175

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The barrier reef tract of New Caledonia is the second largest in the world enclosing lagoons of variable width. The Late Quaternary evolution of these barrier reefs and lagoons is poorly known. A recent high resolution seismic and multibeam bathymetry survey was carried out in the south-western lagoon from shoreline to open ocean across the barrier reef pass systems to perform sequence stratigraphy and to better understand the Quaternary evolution of the lagoon. Two depositional sequences bounded by type-1 erosional surfaces can be identified. The bounding surfaces delineate the bottom of two generations of incised valleys. System tracts comprising a complete succession of regressive, lowstand, transgressive and highstand tracts were observed only in the upper sequence. Chronostratigraphic and sedimentological interpretations of the seismic data are based on correlations with the chronology defined in the nearby cores drilled through the reefs and in the gravity cores previously recovered in the inner lagoon. Interpretation of seismic data is also carried out on the basis of correlation with multibeam bathymetric data. Our results indicate that the history of the New Caledonian lagoon probably does not exceed 200ka marked by two or three brief episodes each of immersion of about ten thousand years. The bathymetric data reveal that during successive low sea level stands, the lagoon was dependent upon erosional fluvial networks. The deep fluvial valleys were connected to the continental slope through the passes. Seismic records reveal that upstream palaeo-channels are not connected to the modern coastal rivers. In contrast, many aggrading deposits, including numerous stacking channels, and extending across the proximal part of the outer lagoon, can be identified. Examination of drainage network morphology suggests a progressive tilt of the outer lagoon. Such evolution reveals that the Nouméa lagoon which is one of the widest in the world is an exceptional modern example of a rimmed shelf providing data to analyze the past counterparts.
ISSN: 0031-0182

insu-00338953
https://hal-insu.archives-ouvertes.fr/insu-00338953
DOI : 10.1016/j.palaeo.2008.08.012

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Wind energy production is very sensitive to turbulent wind speed. Thus rapid variation of wind speed due to changes in the local meteorological conditions can lead to electrical power variations of the order of the nominal power output, in particular when wind power variations on very short time scales, range at few seconds to 1 h, are considered. In small grid as they exist on islands (Guadeloupean Archipelago: French West Indies) such fluctuations can cause instabilities in case of intermediate power shortages. The developed analysis in [14] reveals three main classes of time series for the wind speed fluctuations. In this work, Probability Density Functions (PDFs) are proposed to fit the wind speed fluctuations distributions in each class. After, to simulate wind speed fluctuations sequences, we use a stochastic differential equation, the Langevin equation considering Gaussian turbulence PDF (class I), Gram–Charlier PDF (class II) and a mixture of gaussian PDF (class III). The statistical and dynamical properties of simulated wind sequences are close to those of measured wind sequences, for each class
ISSN: 0306-2619

hal-01527885
https://hal.archives-ouvertes.fr/hal-01527885
DOI : 10.1016/j.apenergy.2012.05.007

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La venue de Benoît XVI à Cuba du 26 au 28 mars 2012 a représenté un temps fort de la vie politique de l’île. Si cette rencontre n’a pas eu la même portée que celle de Jean Paul II en 1998 et qu’aucune déclaration cruciale n’a marqué la visite papale, elle n’en demeure pas moins un événement diplomatique majeur révélateur des évolutions historiques à l’œuvre au sein de l’Église catholique et de la société cubaine. L’absence de discours politique critique d’un pape à la réputation anticommuniste a surpris les journalistes occidentaux. Ceux-ci n’en ont tiré aucune conclusion. Pourtant, les silences du souverain pontife montrent la volonté du Vatican de pallier aux faiblesses structurelles de l’Église catholique cubaine héritée du XIXème siècle tandis que l’accueil réservé par l’administration cubaine rend manifeste la volonté des autorités d’inclure les croyants dans une Patrie cubaine dont ils furent longtemps exclus. Cet article tente de revenir, à partir d’une enquête de terrain minutieuse, sur les implications des discours des différents acteurs au cours de cette rencontre.
The arrival of Benedict XVI to Cuba from March 26 to 28, 2012 represented a high point in the political life of the island. If this meeting does not have the same scope as that of John Paul II in 1998 and no critical statement marked the papal visit, it nonetheless reveals a major diplomatic event of historical developments in work within the Catholic Church and the Cuban society. The lack of critical political discourse of a pope to anti reputation which surprised Western journalists. They do not have any conclusion. Yet the silence of the Pope will show the Vatican to overcome the structural weaknesses of the Cuban Catholic Church inherited from the nineteenth century while the reception by the Cuban government makes manifest the will of the authorities to include believers in Cuban homeland whose they were long excluded. This article attempts to come back from a thorough field investigation on the implications of the speeches of the various actors in this game.
La visita de Benedicto XVI a Cuba, del 26 al 28 de marzo de 2012, representó un momento clave de la política cubana. Aunque no tuvo el mismo impacto que la visita de Juan Pablo II y ninguna declaración crucial marcó la visita papal, constituye un acontecimiento diplomático de suma importancia revelador de las evoluciones históricas que tienen lugar en el seno de la iglesia católica y la sociedad cubana. La ausencia de un discurso político de un papa de reputación anticomunista sorprendió a los periodistas occidentales. Estos últimos no se pronunciaron al respecto. Sin embargo, los silencios del soberano pontífice muestran la voluntad del Vaticano de paliar las debilidades estructurales de la iglesia católica cubana heredadas del siglo XIX. La acogida de la administración cubana, por su parte, revela la voluntad de las autoridades de incluir a los creyentes en una patria cubana de la cual fueron excluidos durante largo tiempo. Este artículo pretende abordar, a partir de una investigación minuciosa en Cuba, las implicaciones de los discursos de los diferentes actores durante este encuentro.
Cuba

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6146
http://journals.openedition.org/etudescaribeennes/6146

Éditeur(s) : Actes de Colloque: Avancées et nouvellles technologies en toxinologie, éditeurs: Julien BARBIER, Evelyne BENOIT, Pascale MARCHOT, César MATTEI, Denis SERVENT
Résumé : Over the past seven years, methods available for the detection of phycotoxins have been extensively reviewed in a number of international expert committees, such as the consultations organised by FAO/IOC/WHO and EFSA, as well as by individual scientists. These reviews have shown that the methods available have severe limitations for the use in official control, either due to their limited scope and detection capability or due to a lack of calibration standards, reference materials and validation efforts. The present review focuses on recent developments in the detection of phycotoxins in several areas of applied research. Not being able to exhaustively describe all recent developments, the review focussed on three areas of interest to the authors: (i) detection of ultra-trace amounts of toxins, (ii) metabolism of toxins and their localisation in biological tissues, and (iii) approaches to detect unknown toxins or analogues of known toxins. Miniaturisation in combination with physico-chemical techniques appears to be a very efficient approach to detect low trace amounts of individual toxin analogues. In particular, the detection of azaspiracids and okadaic acid and analogues, using micro-filtration and on-line pre-concentration techniques, has shown to be useful for the characterisation of various algal and shellfish species. In the area of interactions of toxins with shellfish and mammalian systems, it is noted that several studies on biomarkers reveal either protein biomarkers of exposure to toxins or potential pathways of metabolism of the toxins themselves. A particular focus is given to recent findings in the areas of brevetoxin metabolism and biomarkers as well as azaspiracid localisation and metabolism. Finally, the detection of novel compounds is a particularly challenging area. The interest in this area has risen over the past years following cases of unexplained mouse toxicity such as the UK cockle toxicity and the French atypical toxicity in mussels and oysters from the Atlantic and Mediterranean coasts. Some attention is given to immuno-, functional and cellular bio-assays for the identification of bioactive agents in shellfish.
Durant les sept dernières années, les méthodes disponibles pour la détection des phycotoxines ont été abondamment revues dans de nombreux groupes internationaux d’expertises, tels que les consultations organisées par FAO/IOC/WHO et EFSA ainsi que dans de nombreux articles scientifiques de synthèse. Ces revues ont démontré que, vis-à-vis des systèmes de régulations officiels, les méthodes disponibles présentent des limites d’utilisation importantes. Soit elles ont un périmètre réduit et des limites de détection trop élevées, soit il y a un manque d’étalons, de matériaux de référence ou d’efforts de validation. La présente revue focalise sur les développements récents dans la détection de phycotoxines en recherche appliquée. Sans vouloir décrire de manière exhaustive tous les développements récents, la revue examine trois domaines d’intérêt pour les auteurs : (i) la détection de quantités ultra-traces de toxines, (ii) la métabolisation et la localisation des toxines dans des tissus biologiques, et (iii) les approches pour la détection de toxines non-répertoriées ou des analogues de toxines connues. La miniaturisation en combinaison avec les techniques physico-chimiques constitue apparemment une approche efficace pour la détection de faibles traces d’analogues individuels des toxines. En particulier, la micro-filtration et des techniques de pré-concentration en ligne se sont montrées utiles pour la détection des azaspiracides et des toxines du groupe de l’acide okadaïque dans la caractérisation de diverses espèces d’algues et de coquillages. Dans le domaine des interactions des toxines avec les coquillages et des systèmes vivants de mammifères, nous avons noté que plusieurs études sur les bio-marqueurs révèlent soit des marqueurs protéiniques d’exposition aux toxines, soit des marqueurs du métabolisme des toxines elles-mêmes. Un intérêt spécifique a été trouvé dans les résultats d’étude sur le métabolisme des brévétoxines et des azaspiracides. La détection des composés bioactifs non-répertoriés constitue un défi particulièrement difficile. Ce domaine a trouvé plus d’intérêt dû à plusieurs cas de toxicités inexpliquées dans le test souris telles que les toxicités observées dans les coques en provenance de Grande-Bretagne ou encore dans les moules et huîtres des côtes méditerranéennes et atlantiques françaises. Une attention particulière a été consacrée à l’identification d’agents bioactifs par les essais cellulaires ou fonctionnels ou basés sur la détection immuno-chimique.

Droits : 2010 SFET
http://archimer.ifremer.fr/doc/00019/12975/9949.pdf
http://archimer.ifremer.fr/doc/00019/12975/

Éditeur(s) : HAL CCSD
Résumé : The bacterial microbiota of ants (Hymenoptera: Formicidae) is known to have a defensive role in social insects, particularly for leaf-cutting ants (Formicidae: Attini) due to the use of antimicrobial molecules produced by cuticular actinobacteria. In this thesis, we studied the bacterial microbiota of ants in French Guyana using different approaches based on natural products chemistry and molecular ecology. The first chapter describes the isolation, identification, culture and biological evaluations of 43 cuticular actinobacteria. Antagonism bioassays of isolated strains and antibiotic activities of the culture extracts against human pathogens are presented as well as the identification of an antimicrobial cyclic dipeptide (Cyclo (LPro-LPhe)) isolated from a strain close to Streptomyces thioluteus. Moreover, the implementation of molecular networks applied to UPLC/MS/MS analysis of actinobacterial cocultures allowed us to explore the diversity of metabolites produced under these conditions. The second chapter presents a methodological study to evaluate the capacity of four DNA extraction methods, in terms of richness and composition of the cuticular bacterial microbiota, in high-throughput sequencing from Atta cephalotes and Pseudomyrmex penetrator. The results of metabarcoding highlight two methods of extraction and reveal inter- and intraspecific differences in the composition of cuticular bacterial communities. Finally, chapter three describes the composition of the cuticular bacterial microbiota of Camponotus femoratus and Crematogaster levior in ant garden and the results reveal the acquisition in the environment of a part of the microbiota. In parallel, metabolomic analyses of ant’s cuticle show, on the contrary, a greater specificity related to the ant species. Future researches focusing on statistical analysis strategies combining metabarcoding and metabolomics data are discussed.
Le microbiote bactérien cuticulaire des fourmis (Hymenoptera : Formicidae) est connu pour avoir un rôle défensif chez ces insectes sociaux, notamment chez les fourmis attines (Formicidae : Attini) grâce l’utilisation de molécules antimicrobiennes produites par des actinobactéries cuticulaires. Dans le cadre de cette thèse, nous avons étudié le microbiote bactérien des fourmis de Guyane en utilisant différentes approches en chimie des produits naturels et en écologie moléculaire. Le premier chapitre décrit l’isolement, l’identification, la culture et l’évaluation biologique de 43 actinobactéries cuticulaires de fourmis de Guyane. Les tests d’antagonismes des souches isolées et l’activité antibiotique des extraits de culture contre des micro-organismes pathogènes humains sont présentés ainsi que l’identification d’un dipeptide cyclique (Cyclo(LPro-LPhe)) antimicrobien qui a été isolé à partir d’une souche proche de Streptomyces thioluteus. Par ailleurs, la mise en œuvre de réseaux moléculaires appliqués à une analyse par UPLC/MS/MS de cocultures d’actinobactéries a permis d’explorer la diversité des métabolites produits dans ces conditions. Le deuxième chapitre présente une étude méthodologique pour comparer quatre méthodes d’extraction d’ADN, en termes de richesse et de composition du microbiote bactérien cuticulaire, par séquençage haut débit à partir des espèces Atta cephalotes et Pseudomyrmex penetrator. Les résultats du métabarcoding ADN mettent en lumière deux méthodes d’extraction et révèlent des différences inter- et intraspécifiques dans la composition des communautés bactériennes cuticulaires. Enfin, le chapitre trois décrit la composition du microbiote bactérien cuticulaire des espèces Camponotus femoratus et Crematogaster levior dans les jardins de fourmis. Les résultats soulignent l’acquisition d’une partie du microbiote dans l’environnement. En parallèle l’analyse métabolomique des cuticules montre à contrario une plus grande spécificité liée à l’espèce de fourmi. Les recherches futures axées sur les stratégies d’analyses statistiques combinant le métabarcoding et la métabolomique sont discutées.
https://tel.archives-ouvertes.fr/tel-01537793

NNT : 2017YANE0003
tel-01537793
https://tel.archives-ouvertes.fr/tel-01537793
https://tel.archives-ouvertes.fr/tel-01537793/document
https://tel.archives-ouvertes.fr/tel-01537793/file/thesecarolinebirer.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We explore the use of seismic noise produced by rivers to monitor the bed load transport in the case of a low-discharge braided river in the French Alps: the "torrent de St Pierre". For this purpose, we deployed two dedicated seismic networks during summers 2007 and 2008, for which the characteristics of the recorded continuous signal are similar despite changes in the sensor locations. For dry weather conditions, only melting of nearby glaciers controls the supply of water to the stream. In these conditions, the river hydrology and the seismic energy in the 2-80 Hz frequency band both follow a diurnal fluctuation similar to the thermal amplitude. In contrast during rainfall episodes, the temperature variation fails to explain the hydrodynamic changes. Dense cloud covers reduce glacier melting and the recorded seismic energy denotes bursts of high-frequency seismic noise well correlated with water level data. Comparisons between the recorded seismic signals and the collected hydrological and sediment load data indicate that a frequency band of 3-9 Hz best explains the water level changes and thus the seismic waves coming from the flow turbulence. These analyses also reveal the presence of a seismic noise threshold that might be linked to the water shear stress exerted by the flowing water. Using the seismic energy in this frequency band as a proxy of the fluvial shear stress, the seismic-hydrologic relationship may be sensitive to variations in bed load transport. The spectral content of the seismic energy shows patterns consistent with the mobilization of sediment particles. From the interpretations of the seismic wave attenuation of river sources, we finally propose that stations at a distance from the stream less than 50 m are able to record most sediment particles. Farther stations are still useful during extreme events when largest grain sizes are mobilized. More generally this study demonstrates the feasibility of using the river seismic signal to survey bed load transport in various river types from small braided mountain rivers like the "torrent de St Pierre" to the large entrenched Himalayan rivers.
ISSN: 0022-1694

hal-00644789
https://hal.archives-ouvertes.fr/hal-00644789
DOI : 10.1016/j.jhydrol.2011.07.014

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Vertical displacements on the SW-NE T (e) over capt fault (Eastern Pyrenees Axial Zone, France), which separates the Variscan Canigou-Caranca and Mont-Louis massifs, were constrained using a thermochronologic multi-method approach. Ar-40/Ar-39 data from the granitic Mont-Louis massif record its Variscan cooling history and reveal no ages younger than Early Cretaceous, while the Canigou-Caranca gneiss massif records systematically younger Ar-40/Ar-39 ages. These younger Ar-40/Ar-39 ages in the Canigou-Caranca gneiss massif are the result of partial to total rejuvenation of argon isotopic systems related to a thermal flow coeval with the Cretaceous HT-BP metamorphism in the North Pyrenean Zone. Only the deepest rocks from the Canigou-Caranca suffered this extensive Mid-Cretaceous thermal overprint probably due to differential burial around 4 km at that time. The post Mid-Cretaceous vertical displacements along the T (e) over capt fault are recorded by "low" temperature thermochronology using K-feldspar Ar-40/Ar-39, zircon and apatite fission track and (U-Th)/He datings. The Mont-Louis granite samples experienced a long period of protracted cooling reflecting a lack of thermo-tectonic activity in this area from Late Palaeozoic to Early Cenozoic, followed by cooling from 55-60 Ma to Late Eocene at a mean rate of 15-20 degrees C/Ma in the final stage. This cooling stage corresponds to T (e) over capt fault reactivation with a reversed component, promoting exhumation of the Mont-Louis roof zone contemporaneously with the south-vergent Pyrenean thrusting. In the Canigou-Caranca massif, the main cooling event occurred from 32 to 18 Ma at a maximum rate of 30 degrees C/Ma during Early Oligocene followed by a more moderate rate of 3 degrees C/Ma from Late Oligocene to Early Burdigalian, coeval with the normal reactivation of the T (e) over capt fault in brittle conditions that accommodated the final exhumation of the massif during the opening of the Gulf of Lion.
ISSN: 1437-3254

hal-00411442
https://hal.archives-ouvertes.fr/hal-00411442
DOI : 10.1007/s00531-007-0179-x

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : International audience
2-Amino-9H-pyrido[2,3-b]indole (AalphaC) is the most abundant carcinogenic heterocyclic aromatic amine (HAA) formed in mainstream tobacco smoke. AalphaC is a liver carcinogen in rodents, but its carcinogenic potential in humans is not known. To obtain a better understanding of the genotoxicity of AalphaC in humans, we have investigated its metabolism and its ability to form DNA adducts in human hepatocytes. Primary human hepatocytes were treated with AalphaC at doses ranging from 0.1-50 muM, and the metabolites were characterized by ultra-performance LC/ion trap multistage mass spectrometry (UPLC/MSn). Six major metabolites were identified: a ring-oxidized doubly conjugated metabolite, N2-acetyl-2-amino-9H-pyrido[2,3-b]indole-6-yl-oxo-(beta-d-glucuronic acid) (N2-acetyl-AalphaC-6-O-Gluc); two ring-oxidized glucuronide (Gluc) conjugates: 2-amino-9H-pyrido[2,3-b]indol-3-yl-oxo-(beta-d-glucuronic acid) (AalphaC-3-O-Gluc) and 2-amino-9H-pyrido[2,3-b]indol-6-yl-oxo-(beta-d-glucuronic acid) (AalphaC-6-O-Gluc); two sulfate conjugates, 2-amino-9H-pyrido[2,3-b]indol-3-yl sulfate (AalphaC-3-O-SO3H) and 2-amino-9H-pyrido[2,3-b]indol-6-yl sulfate (AalphaC-6-O-SO3H); and the Gluc conjugate, N2-(beta-d-glucosidurony1)-2-amino-9H-pyrido[2,3-b]indole (AalphaC-N2-Gluc). In addition, four minor metabolites were identified: N2-acetyl-9H-pyrido[2,3-b]indol-3-yl sulfate (N2-acetyl-AalphaC-3-O-SO3H), N2-acetyl-9H-pyrido[2,3-b]indol-6-yl sulfate (N2-acetyl-AalphaC-6-O-SO3H), N2-acetyl-2-amino-9H-pyrido[2,3-b]indol-3-yl-oxo-(beta-d-glucuronic acid) (N2-acetyl-AalphaC-3-O-Gluc), and O-(beta-d-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AalphaC-HN2-O-Gluc). The latter metabolite, AalphaC-HN2-O-Gluc is a reactive intermediate that binds to DNA to form the covalent adduct N-(2'-deoxyguanosin-8-yl)-2-amino-9H-pyrido[2,3-b]indole (dG-C8-AalphaC). Preincubation of hepatocytes with furafylline, a selective mechanism-based inhibitor of P450 1A2, resulted in a strong decrease in the formation of AalphaC-HN2-O-Gluc and a concomitant decrease in DNA adduct formation. Our findings describe the major pathways of metabolism of AalphaC in primary human hepatocytes and reveal the importance of N-acetylation and glucuronidation in metabolism of AalphaC. P450 1A2 is a major isoform involved in the bioactivation of AalphaC to form the reactive AalphaC-HN2-O-Gluc conjugate and AalphaC-DNA adducts.
ISSN: 0893-228X

anses-01419468
https://hal-anses.archives-ouvertes.fr/anses-01419468
https://hal-anses.archives-ouvertes.fr/anses-01419468/document
https://hal-anses.archives-ouvertes.fr/anses-01419468/file/Bellamri%20et%20al.%20-%202016%20-%20Metabolism%20of%20the%20Tobacco%20Carcinogen%202-Amino-9H-py.pdf
DOI : 10.1021/acs.chemrestox.6b00394

Éditeur(s) : Elsevier Science Bv
Résumé : We present the results from a new grid of deep penetration multichannel seismic (MCS) profiles over the 280-km-long north-central segment of the Lesser Antilles subduction zone. The 14 dip-lines and 7 strike-lines image the topographical variations of (i) the subduction interplate décollement, (ii) the top of the arcward subducting Atlantic oceanic crust (TOC) under the huge accretionary wedge up to 7 km thick, and (iii) the trenchward dipping basement of the deeply buried forearc backstop of the Caribbean upper plate. The four northernmost long dip-lines of this new MCS grid reveal several-kilometres-high topographic variations of the TOC beneath the accretionary wedge offshore Guadeloupe and Antigua islands. They are located in the prolongation of those mapped on the Atlantic seafloor entering subduction, such as the Barracuda Ridge. This MCS grid also provides unexpected evidences on huge along-strike topographical variation of the backstop basement and of the deformation style affecting the outer forearc crust and sediments. Their mapping clearly indicates two principal areas of active deformation in the prolongation of the major Barracuda and Tiburon ridges and also other forearc basement highs that correspond to the prolongation of smaller oceanic basement highs recently mapped on the Atlantic seafloor. Although different in detail, the two main deforming forearc domains share similarities in style. The imaged deformation of the sedimentary stratification reveals a time- and space-dependent faulting by successive warping and unwarping, which deformation can be readily attributed to the forearc backstop sweeping over the two obliquely-oriented elongated and localized topographical ridges. The induced faulting producing vertical scarps in this transport does not require a regional arc-parallel extensional regime as proposed for the inner forearc domain, and may support a partitioned tectonic deformation such as in the case of an outer forearc sliver. A contrasted reflectivity of the sedimentary layering at the transition between the outer forearc and accretionary domains was resolved and used to define the seaward edge of the outer forearc basement interpreted as being possibly a proxy to the updip limit of the interplate seismogenic zone. Its mapping documents along-arc variations of some tens of kilometres the subduction backstop with respect to the negative gravity anomaly commonly taken as marking the subduction trench. With the exception of the southernmost part, the newly mapped updip limit reaches 25 km closer to the trench, thus indicating a possible wider seismogenic zone over almost the whole length of the study area.
Tectonophysics (0040-1951) (Elsevier Science Bv), 2013-09 , Vol. 603 , P. 32-54

Droits : 2013 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00139/25003/23109.pdf
DOI:10.1016/j.tecto.2013.05.028
http://archimer.ifremer.fr/doc/00139/25003/

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : Extensional fault systems in the Earth's crust can exhibit two end-member geometries that we identify as distributed and localized faulting regimes. A satellite image analysis of fault populations from the Main Ethiopian Rift-Afar area reveals that the rift architecture contains these two faulting regimes. The occurrence of these regimes reveals a jump in the scale of fault segmentation and linkage. Strain localization at rift border zones exhibits particularly large-scale fault linkage and a power law size distribution. This regime replaces prior distributed fault systems, showing small-scale fault linkage and an exponential size distribution. The distributed faulting is interpreted as confined to the thick trap basalt carapace. We show that continental fault systems can develop by a combination of these two geometries, and we demonstrate how to quantitatively decipher the jump between them.
ISSN: 0278-7407

hal-00411147
https://hal.archives-ouvertes.fr/hal-00411147
DOI : 10.1029/2007TC002148

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Holocene Lake Mega-Chad (LMC) was the largest late Quaternary water-body in Africa. The development of this giant paleo-lake is related to a northward shift of the isohyetes interpreted as evidence for an enhanced Monsoon (African Humid Period). Numerous preserved coastal features have been described all around the LMC shore. Such features reveal the main paleo-hydrodynamical tendencies. In the context of a closed water-body like LMC, hydrodynamics are forced mainly by winds. We use a three-dimensional numerical model (SYMPHONIE) to simulate the mean hydrodynamics in LMC under both Harmattan-like (northeasterly trade winds) and Monsoon-like (southwesterly winds) forcings. The northern part of LMC displays coastal features, such as sand spits, that are consistent with the simulations forced by Harmattan-like winds. Geomorphic features related to Monsoon-driven hydrodynamics are not clearly expressed. They could have developed during the early stage of LMC but subsequently reworked. At the time of sand-spit building, Harmattan-like driven hydrodynamics prevailed and related coastal features were preferentially preserved in the sedimentary record.
ISSN: 0033-5894

hal-00475633
https://hal.archives-ouvertes.fr/hal-00475633
DOI : 10.1016/j.yqres.2009.10.010

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study analyzes the active tectonics within the northwestern and southeastern extensions of the Pambak-Sevan-Syunik fault (PSSF), a major right-lateral strike-slip fault cutting through Armenia. Quantifying the deformations in terms of geometry, kinematics, slip rates and earthquake activity, using cosmogenic 3He, OSL/IRSL and radiocarbon dating techniques, reveal different behaviors between the two regions. Within the northwestern extension, in the region of Amasia, the PSSF bends to the west and splits into two main WNW–ESE trending reverse faults defining a compressional pop-up structure. We estimate an uplift rate and a shortening rate of 0.5 ± 0.1 mm/y and 1.4 ± 0.6 mm/y, respectively. This suggests that most of the ∼2 mm/y right lateral movement of the PSSF seems to be absorbed within the Amasia pop-structure. Within the southeastern extension, the PSSF shows signs of dying out within the Tsghuk Volcano region at the southernmost tip of the Syunik graben. There, the tectonic activity is characterized by a very slow NS trending normal faulting associated with a slight right-lateral movement. Slip rates analyses (i.e. vertical slip rate, EW stretching rate at 90° to the fault, and right-lateral slip rate of ∼0.2 mm/y, ∼0.1 mm/y and ∼0.05 mm/y, respectively) lead to the conclusion that the right lateral movement observed further north along the PSSF is mainly transferred within other active faults further west within the Karabagh (Hagari fault or other structures further northwestwards). Comparing our slip rates with those estimated from GPS data suggests that most of the deformation is localized and seismic, at least within the Tsghuk region. The geometrical and kinematic pattern observed within the two terminations of the PSSF suggests that the fault and its surrounding crustal blocks are presently rotating anticlockwise, as also observed within the GPS velocity field. This is consistent with the recent kinematic models proposed for the Caucasus-Kura-South Caspian region and brings a new insight into the present geodynamics of Armenia.
ISSN: 1040-6182

hal-01307342
https://hal.archives-ouvertes.fr/hal-01307342
DOI : 10.1016/j.quaint.2015.05.021

Éditeur(s) : Inter-Research
Résumé : The widespread use of Agent Orange (a mixture of phenoxyl herbicides) over Southern Vietnam by US Forces led to the decimation of mangrove forests in the Mekong Delta. Mangrove trees Avicennia alba were sampled across the Mekong Delta; their age was assessed using models based on internode growth and samples were genotyped for 6 microsatellite loci. The evolution of genetic diversity over time elapsed since local extinction was reconstructed and compared with the genetic diversity of an unaffected population from Thailand, The results show that genetic diversity of the A. alba population is still increasing in the Mekong Delta 3 decades after the end of the Vietnam War, but is reaching an asymptotic level that is comparable to the adjacent non-affected population of Thailand. This might be a sign of genetic recovery, but may also reveal a limitation, either of genetic enrichment due to current predominance of auto-recruitment or of demographic increase due to intraspecific competition in this pioneer species. In any case, these results, although encouraging, demonstrate that genetic recovery after complete or almost complete population depletion continues over a longer time-scale than apparent demographic recovery.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2009-09 , Vol. 390 , P. 129-135

Droits : Inter-Research 2009
http://archimer.ifremer.fr/doc/2009/publication-6898.pdf
DOI:10.3354/meps08183
http://archimer.ifremer.fr/doc/00000/6898/