Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: The TGF-β transforming growth factor is the most pleiotropic cytokine controlling a broad range of cellular responses that include proliferation, differentiation and apoptosis. The context-dependent multifunctional nature of TGF-β is associated with complex signaling pathways. Differential models describe the dynamics of the TGF-β canonical pathway, but modeling the non-canonical networks constitutes a major challenge. Here, we propose a qualitative approach to explore all TGF-β-dependent signaling pathways. RESULTS: Using a new formalism, CADBIOM, which is based on guarded transitions and includes temporal parameters, we have built the first discrete model of TGF-β signaling networks by automatically integrating the 137 human signaling maps from the Pathway Interaction Database into a single unified dynamic model. Temporal property-checking analyses of 15934 trajectories that regulate 145 TGF-β target genes reveal the association of specific pathways with distinct biological processes. We identify 31 different combinations of TGF-β with other extracellular stimuli involved in non-canonical TGF-β pathways that regulate specific gene networks. Extensive analysis of gene expression data further demonstrates that genes sharing CADBIOM trajectories tend to be co-regulated. CONCLUSIONS: As applied here to TGF-β signaling, CADBIOM allows, for the first time, a full integration of highly complex signaling pathways into dynamic models that permit to explore cell responses to complex microenvironment stimuli.
ISSN: 1752-0509

inserm-00978313
http://www.hal.inserm.fr/inserm-00978313
http://www.hal.inserm.fr/inserm-00978313/document
http://www.hal.inserm.fr/inserm-00978313/file/1752-0509-8-30.pdf
DOI : 10.1186/1752-0509-8-30

Éditeur(s) : Université de la Rochelle
Résumé : In order to better understand the functioning of the Brouage intertidal mudflat (Marennes- Oléron Basin, France), its carbon-based trophic web has been modelled and analyzed. The foodweb building is based on the 4 step method of Inverse Analysis: 1) conceive an a priori model as the graph of compartments (nodes) between which exist fluxes of material (vertices). These vertices are the unknowns for the problem; 2) gather all the existing knowledge about the ecosystem and translate it into linear equations and inequalities involving the fluxes; 3) complete this set of data by common knowledge on the behaviour of the compartments and translate it into inequalities, 4) solve the obtained linear system under the parsimony principle to find a unique solution vector. The food-web analysis is based on. The first purpose of this work was a methodological one: inverse analysis method has been adapted to consider the seasonal and spatial variability of the temperate ecosystem: two seasons have been coupled in the computation and the area has been divided into three geographical zones along a cross-shore gradient. Hence, two types of physical exchanges are involved: the benthicpelagic ones and the advection ones. Statistical results can also be obtained by coupling Monte Carlo methods to Inverse Analysis. To study the obtained networks, new indices based on Markov Chains take delay into account in describing integrative transfers of material between compartments. This lets emerge the systems' properties that are not obvious at first sight and emphasizes the role of peculiar components. The second purpose was to apply such methods to the Brouage mudflat ecosystem in order to better understand its functioning. As the knowledge and methods evolve, various food webs were computed and analyzed with the help such indices and existing ones. Sensitivity analyses allow to point at the most crucial lacks of knowledge, which can orientate future field research. New data would improve the quality of the model in two ways: one the one hand, they would validate or invalidate the outcomes and on the other hand, they would give useful information to better constrain some of the black boxes and most uncertain fluxes, especially the advection and vertical flows. The main results of the study show a strongly seasonal system in which benthic and pelagic components are linked with intensity. The system is driven by its high local benthic primary production, but also depends on imports from the basin. Each of the 3 geographic zones has a peculiar functioning. The central zone corresponds to the classical description of European intertidal mudflats: very productive, it can feed the other regions. It is a production zone. The upper part is less productive but is fed by the middle one via the water column and can be exploited by shorebirds. It is a degradation zone (material is transformed for less qualitative). The lower part strongly depends on the basin imports for its functioning, as the cultivated bivalves act as a pump for pelagic material of which a great part is deposited under the cultivation structures (oyster racks or mussels "bouchots"). It is a transformation zone.
Un double objectif (méthodologique et appliqué) a été visé par une modélisation du réseau trophique de la vasière de Brouage (Bassin de Marennes Oléron, France) à l'aide de l'analyse inverse, et son étude à l'aide de l'analyse des réseaux. L'Analyse Inverse permet en effet de reconstruire l'ensemble du réseau à partir de données éparses, le problème du manque de données étant récurrent en Ecologie. Au plan méthodologique, l'analyse inverse a été adaptée à la prise en compte des caractères saisonnier et spatialement hétérogène d'un écosystème tempéré de zone intertidale : deux saisons ont ainsi été couplées et la vasière a été considérée le long d'un transect perpendiculaire au rivage et divisé en trois zones spatiales. Deux types de flux physiques interviennent donc : les flux verticaux de dépôt et remise en suspension, et les flux d'advection via la colonne d'eau. Des pistes d'amélioration et de nouvelles méthodes sont proposées. Un résultat sous forme statistique peut être obtenu en couplant l'utilisation de méthodes de Monte Carlo à l'analyse inverse pour la construction des réseaux trophiques. Les moyens d'étude des modèles ont été enrichis par la mise au point d'indices issus de la construction de chaînes de Markov et prenant en compte le caractère temporel des transferts de matière entre compartiments. Enfin, la transformation mathématique du modèle statique pour une étude dynamique de la stabilité de l'équilibre décrit est abordée. Plusieurs modèles ont été construits au cours de l'évolution des méthodes et de l'acquisition de connaissances sur le site. Des méthodes d'analyses existantes et d'autres mises au point dans le cadre de cet ouvrage ont été appliquées aux réseaux obtenus afin de faire émerger les propriétés du fonctionnement de la vasière et de souligner le rôle de certains compartiments. Des analyses de sensibilité permettent d'évaluer la robustesse des résultats et d'orienter les recherches futures en mettant en évidence les manques les plus cruciaux. Des données supplémentaires, notamment concernant les foraminifères benthiques, le zooplancton ou les mouvements verticaux du microphytobenthos permettront de fournir de meilleures contraintes et de valider (ou non) les résultats obtenus. Les principaux résultats montrent un système au fort caractère saisonnier dont les compartiments benthiques et pélagiques sont très liés. La production primaire benthique locale est un moteur important, mais qui ne suffirait pas à suppléer l'indispensable importation de matériel détritique. Le découpage de la vasière en trois zones fait apparaître les particularités de chacune. La zone centrale correspond à la description classique des « vasières intertidales européennes » : très productive, elle peut alimenter les autres régions. C'est une zone de production et d'exportation. La partie supérieure est moins productive et reçoit de la matière de la zone de milieu d'estran via la colonne d'eau. Sa production secondaire peut alors être exploitée par les limicoles, nombreux en hiver. C'est une zone de dégradation et d'exportation. Le bas d'estran dépend fortement des importations extérieures, « pompées » par les bivalves cultivés qui sont ainsi directement responsables d'une forte sédimentation sous les structures mytilicoles et ostréicoles. C'est une zone de transformation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2260.pdf
http://archimer.ifremer.fr/doc/00000/2260/

Éditeur(s) : HAL CCSD
Résumé : International audience
This communication reports on a field experiment carried out on a microtidal beach in Camargue, France. The analysis is built on the initial work presented by Sous et al. (2016) on swash-groundwater dynamics. The analysis of a cross-shore network of buried pressure sensors allows to monitor the watertable dynamics over the full 2013-2014 winter season. The pressure head gradients are observed to be primarily seaward, forced by a higher level at the landward boundary. The groundwater flux is driven by the relative fluctuations of Still Water Level and inland elevations. Rain and tides have a little effect. A nearly isolated groundwater circulation is driven by wave activity below the swash zone whatever the overall watertable gradient. Estimations of beach groundwater discharge over the Gulf of Beauduc reveal the importance of beach groundwater in the exchanges between coastal aquifer and open sea.
Coastal Dynamics 2017
Helsingor, Denmark

hal-01562908
https://hal.archives-ouvertes.fr/hal-01562908

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
A hallmark of living systems is the management and the storage of information through genetic and epigenetic mechanisms. Although the notion of epigenetics was originally given to any regulation beyond DNA sequence, it has often been restricted to chromatin modifications, supposed to behave as cis-markers, specifying the sets of genes to be expressed or repressed. This definition does not take into account the initial view of epigenetics, based on nonlinear interaction networks whose "attractors" can remain stable without need for any chromatin mark. In addition, most chromatin modifications are the steady state resultants of highly dynamic modification and de-modification activities and, as such, seem poorly appropriate to work as long-term memory keepers. Instead, the basic support of epigenetic memory could remain the attractors, to which chromatin modifications belong as do many other components. The influence of chromatin modifications in memory is highly questionable when envisioned as static structural marks, but can be recovered under the dynamic circuitry perspective, thanks to their self-templating properties. Beside their standard repressive or permissive functions, chromatin modifications can also influence transcription in multiple ways such as: (1) by randomizing or inversely stabilizing gene expression, (2) by mediating cooperativity between pioneer and secondary transcription factors, and (3) in the hysteresis and the ultrasensitivity of gene expression switches, allowing the cells to take unambiguous transcriptional decisions.
ISSN: 1420-682X

hal-01063617
https://hal.archives-ouvertes.fr/hal-01063617
DOI : 10.1007/s00018-012-0923-7
PUBMED : 22331281

Éditeur(s) : HAL CCSD Réseau « Développement durable et territoires fragiles »
Résumé : The Green and Blue infrastructure (Trame verte et bleue –TVB) is a new conservation policy tool based on the notions of ecological network and corridor. The introduction of this new instrument through the French Grenelle environment commitments brings about some change in the spatial strategy of the conservation policy. Beyond the identification of priority conservation areas, ecological planning of all the territory is concerned. The TVB’s implementation process establishes the connection of multi and nested decisional and action levels. It thus creates specific situations of complexity and uncertainty that require innovation and perpetual change of governance. The study of the Auvergne region case through the adaptive governance analytical framework highlights the potential fruitful role of Regional nature parks in such dynamics of change and learning. Mots-clés : aménagement durable des territoires, biodiversité, réseau écologique, corridor écologique, gouvernance adaptative, socio-écosystème, trame verte et bleue Keywords : Sustainable landplaning, Biodiversity, Ecological network, Adaptive governance, socio-ecosystem
La Trame verte et bleue (TVB), nouveau dispositif d’action publique visant à enrayer la perte de biodiversité traduit un renouvellement des référentiels de justification des politiques de conservation et de leur stratégie territoriale. Il s’agit d’intégrer la planification écologique dans l’aménagement de l’ensemble du territoire. Le processus de territorialisation de la TVB met en rapport de multiples niveaux de décision et d’action imbriqués. Il crée de ce fait des configurations inédites de complexité et d’incertitude et implique des innovations en termes de gouvernance que le cadre analytique de la gouvernance adaptative permet d’appréhender. En nous appuyant sur l’exemple du Parc Naturel Régional des Volcans d’Auvergne, nous analysons le rôle que ces institutions sont susceptibles de jouer dans ces dynamiques de changement et d’apprentissage socio-technique et politique qui conditionnent une mise en œuvre effective de la TVB.
ISSN: 1772-9971

hal-01195370
https://hal.archives-ouvertes.fr/hal-01195370
DOI : 10.4000/developpementdurable.9675
PRODINRA : 269288

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We developed a new granular material (MatIV) to study experimentally landscape evolution in active mountain belt piedmonts. Its composition and related physical properties have been determined using empirical criteria derived from the scaling of deformation, erosion-transport and sedimentation natural processes. MatIV is a water-saturated composite material made up with 4 granular components (silica powder, glass microbeads, plastic powder and graphite) whose physical, mechanical and erosion-related properties were measured with different laboratory tests. Mechanical measurements were made on a modified Hubbert-type direct shear apparatus. Erosion-related properties were determined using an experimental set-up that allows quantifying the erosion/sedimentation budget from tilted relaxation topographies. For MatIV, we also investigated the evolution of mean erosion rates and stream power erosion law exponents in 1D as a function of slope.;Our results indicate that MatIV satisfies most of the defined criteria. It deforms brittlely according to the linear Mohr-Coulomb failure criterion and localizes deformation along discrete faults. Its erosion pattern is characterized by realistic hillslope and channelized processes (slope diffusion, mass wasting, channel incision). During transport, eroded particles are sorted depending on their density and shape, which results in stratified alluvial deposits displaying lateral fades variations. To evaluate the degree of similitude between model and nature, we used a new experimental device that combines accretionary wedge deformation mechanisms and surface runoff erosion processes. Results indicate that MatIV succeeded in producing detailed morphological and sedi-mentological features (drainage basin, channel network, terrace, syntectonic alluvial fan). Geometric, kinematic and dynamic similarity criteria have been investigated to compare precisely model to nature. Although scaling is incomplete, it yields particularly informative orders of magnitude. With all these characteristics, MatIV appears as a very promising material to investigate experimentally a wide range of scientific questions dealing with relief dynamics and interactions between tectonics, erosion and sedimentation processes.
ISSN: 0040-1951

hal-00669904
https://hal.archives-ouvertes.fr/hal-00669904
DOI : 10.1016/j.tecto.2011.09.029

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : International audience
The dissolution of carbonate rocks usually leads to both porosity (ϕ) and permeability (k) increase. We present experimental evidences and physical-based models of positive and anti-correlated dynamics of k and ϕ observed during dissolution experiments of carbonate rocks. We study the way the rate of change of ϕ and k is controlled by the degree of undersaturation of the percolating solution for two different types of carbonate rocks. We document the occurrence of an anti-correlated k−ϕ trend when the flowing fluid (deionized water) has a weak capacity of dissolution. A positive correlation is found when CO2 is added to the deionized water to increase the potential dissolution rate. Detailed analyses of the microstructures of the rock performed by X-ray microtomography reveal that low dissolution rate favors detachment of solid particles and their subsequent accumulation at the pore-throat inlet. Particles are detached from the rock matrix due to the differential dissolution rate of the indurated grains and the microporous cement. We then propose a simple phenomenological model to interpret the effect of the pore-throat clogging by the accumulation of partially dissolved carbonate particles. We conjecture that permeability is controlled by the decrease of the effective hydraulic radius and the increase of the tortuosity due to partial and localized obstruction of the pore network. Conversely, increasing the level of undersaturation of the flowing solution leads to an augmented potential of dissolving most of the transported particles before they reach the throats. In this case, both k and ϕ increase and display power-law correlations.
ISSN: 0169-3913

hal-01174145
https://hal.archives-ouvertes.fr/hal-01174145
DOI : 10.1007/s11242-015-0456-2

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Tectonically controlled landforms develop morphologic features that provide useful markers to investigate crustal deformation and relief growth dynamics. In this paper, we present results of morphotectonic experiments obtained with an innovative approach combining tectonic and surface processes (erosion, transport, and sedimentation), coupled with accurate model monitoring techniques. This approach allows for a qualitative and quantitative analysis of landscape evolution in response to active deformation in the three end-member geological settings: compression, extension, and strike–slip.Experimental results outline first that experimental morphologies evolve significantly at a short time scale. Numerous morphologic markers form continuously, but their lifetime is generally short because erosion and sedimentation processes tend to destroy or bury them. For the compressional setting, the formation of terraces above an active thrust appears mainly controlled by narrowing and incision of the main channel through the uplifting hanging-wall and by avulsion of deposits on fan-like bodies. Terrace formation is irregular even under steady tectonic rates and erosional conditions. Terrace deformation analysis allows retrieving the growth history of the structure and the fault slip rate evolution. For the extensional setting, the dynamics of hanging-wall sedimentary filling appears to control the position of the base level, which in turn controls footwall erosion. Two phases of relief evolution can be evidenced: the first is a phase of relief growth, and the second is a phase of upstream propagation of topographic equilibrium that is reached first in the sedimentary basin. During the phase of relief growth, the formation of triangular facets occurs by degradation of the fault scarp, and their geometry (height) becomes stationary during the phase of upstream propagation of the topographic equilibrium. For the strike–slip setting, the complex morphology of the wrench zone, composed of several interacting fault segments, enhances the interactions with the drainage network. Because of the widening of the main fault zone toward the surface, a significant amount of distributed deformation is observed along the wrench zone. Locally, where two terminations of fault segments interact, less than a quarter of the far field displacement can remain measurable using fault offsets, leading to a systematic underestimation of the real fault slip rate.These different experimental examples illustrate the great potential of the approach coupling deformation mechanisms and erosion–transport–sedimentation processes to investigate qualitatively and quantitatively the morphotectonic evolution of tectonically controlled landscapes.
ISSN: 0169-555X

hal-01243587
https://hal.archives-ouvertes.fr/hal-01243587
DOI : 10.1016/j.geomorph.2015.02.011

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
Nowadays, technological advances in satellite imagery measurements as well as the development of dense geodetic and seismologic networks allow for a detailed analysis of surface deformation associated with active fault seismic cycle. However, the study of earthquake dynamics faces several limiting factors related to the difficulty to access the deep source of earthquake and to integrate the characteristic time scales of deformation processes that extend from seconds to thousands of years. To overcome part of these limitations and better constrain the role and couplings between kinematic and mechanical parameters, we have developed a new experimental approach allowing for the simulation of strike-slip fault earthquakes and analyze in detail hundreds of successive seismic cycle. Model rheology is made of multilayered visco-elasto-plastic analog materials to account for the mechanical behavior of the upper and lower crust and to allow simulating brittle/ductile coupling, postseismic deformation phase and far-field stress transfers. The kinematic evolution of the model surface is monitored using an optical system, based on subpixel spectral correlation of high-resolution digital images. First, results show that the model succeed in reproducing the deformation mechanisms and surface kinematics associated to the main phases of the seismic cycle indicating that model scaling is satisfactory. These results are comforted by using numerical algorithms to study the strain and stress distribution at the surface and at depth, along the fault plane. Our analog modeling approach appears, then, as an efficient complementary approach to investigate earthquake dynamics.
ISSN: 0278-7407

hal-01174176
https://hal.archives-ouvertes.fr/hal-01174176
DOI : 10.1002/2014TC003701

Résumé : Le concept de réseau offre un modèle de représentation pour une grande variété d'objets et de systèmes, aussi bien naturels que sociaux, dans lesquels un ensemble d'entités homogènes ou hétérogènes interagissent entre elles. Il est aujourd'hui employé couramment pour désigner divers types de structures relationnelles. Pourtant, si chacun a une idée plus ou moins précise de ce qu'est un réseau, nous ignorons encore souvent les implications qu'ont ces structures dans de nombreux phénomènes du monde qui nous entoure. C'est par exemple le cas de processus tels que la diffusion d'une rumeur, la transmission d'une maladie, ou même l'émergence de sujets d'intérêt commun à un groupe d'individus, dans lesquels les relations que maintiennent les individus entre eux et leur nature s'avèrent souvent être les principaux facteurs déterminants l'évolution du phénomène. C'est ainsi que l'étude des réseaux est devenue l'un des domaines émergents du 21e siècle appelé la "Science des réseaux". Dans ce mémoire, nous abordons trois problèmes de la science des réseaux: le problème de la diffusion dans les réseaux sociaux, où nous nous sommes intéressés plus particulièrement à l'impact de la dynamique du réseau sur le processus de diffusion, le problème de l'analyse des réseaux sociaux, dans lequel nous avons proposé une solution pour tirer parti de l'ensemble des informations disponibles en combinant les informations sur la structure du réseau et les attributs des noeuds et le problème central de la collecte de données sociales, où nous nous sommes intéressés au cas particulier de la collecte de données en milieux sauvages
The concept of network provides a model for representing a wide variety of objects and systems, both natural and social, in which a set of homogeneous or heterogeneous entities interact. It is now widely used to describe various kinds of relational structures. However, if everyone has an idea of the concept of network, we often ignore the implications that these structures have in real world phenomena. This is for example the case of processes such as the spread of a rumor, the disease transmission, or even the emergence of subjects of common interest for a group of individuals, in which the relations maintained between individuals, and their nature, often prove to be the main factors determining the evolution of the phenomenon. This is the reason why the study of networks has become one of the emerging areas in the 21st century called the "Science of networks." ln this thesis, we address three issues of the domain of the science of networks: the problem of diffusion in social networks, where we have addressed more particularly the impact of the network dynamics on the diffusion process, the problem of the analysis of social networks, in which we have proposed a solution to take full advantage of all information available on the network by combining information on both structure and node attributes and the central problem of the social data collection, for which we have focused on the particular case of the data collection in a wild environment.

http://www.theses.fr/2012AGUY0569/document

Éditeur(s) : ESA Publication
Résumé : Satellite remote sensing has emerged as an essential and necessary observing system to acquire global information about the state of the ocean. Complemented with in situ observing networks, the ultimate goals are to be able to make accurate estimates of selected key sets of geophysical variables, with the intention of either making operational predictions across time and spatial boundaries, or advancing fundamental knowledge through development of empirical relationships and theoretical models. For satellite oceanography, improvements are then constantly being sought in our understandings of the geophysical processes, the sensor physics, the electromagnetic and microwave properties and interactions at the complex air-sea interface. Challenges appear as unlimited as the variety of sea surface dynamics and boundary layer meteorological conditions with their broad range of spatial and temporal scales across the globe. To face these challenges, numerous efforts took places over the passed decade to build an ever-increasing quality, quantity, duration and integration of ocean observations. In parallel, simulation capabilities largely improved. All these efforts are then all critically calling for improved methodologies to better structure the wealth of information that is made readily accessible. This latter aspect is a very demanding new component for future multidisciplinary scientific research. Major innovations to consolidate sensor data repositories, to automate tailored queries, to extract, reveal and quantify relationships will then closely associate computer science developments and applied statistics with comprehensive theoretical and experimental thematic studies.
Proceedings of OceanObs'09: Sustained Ocean Observations and Information for Society (ESA Publication), 2010

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00029/14046/11241.pdf
DOI:10.5270/OceanObs09.pp.12
http://archimer.ifremer.fr/doc/00029/14046/

Résumé : Les territoires amérindiens couvrent de vastes étendues de forêts tropicales et possèdent une forte valeur sociale et environnementale, soumis à des contraintes et opportunités variées, ils sont de nos jours le siège de nombreuses transformations territoriales. Ces transformations sont complexes et multiformes. Elles impliquent l’adoption de nouveaux modes de productions et de consommation, le réajustement des formes d’organisation sociale et des dynamiques de réaffirmation identitaireet territoriale. Or les liens entre tous ces processus sont encore mal compris et rendent délicate le compréhension des dynamiques d’adaptation des systèmes amérindiens de gestion des ressources communes.Cette thèse s’intéresse particulièrement aux dynamiques territoriales des amérindiens wayapi et teko de la commune de Camopi en Guyane française. Elle intègre des données sur l’occupation de sol obtenues par télédétection, des données socio-économiques et productives à l’échelle des ménages et des données qualitatives sur les processus identitaires, les réseaux de parente, les politiques de conservation et la gouvernance du territoire. Elle montre que malgré la sédentarisation de l’habitat autour des bourgs locaux, la croissance des revenus monétaires issus des emplois salariés et des aides sociales, combinées avec le maintien des réseaux de parente et d’entraide, permet une redynamisation des systèmes de mobilité et une diversification des territoires amérindiens. De plus, les politiques environnementales mises en place sur le territoire impliquent des processus de territorialisation et de revendication identitaires et motivent la construction collective d’un projet de développement local endogène. Une approche comparative avec la situation des amérindiens wayapi vivant au Brésil et évoluant dans un contexte socio-économique, institutionnel et environnemental bien différent montre des dynamiques similaires. Les amérindiens de ces deux pays adoptent des systèmes d’exploitation du territoire multi-locaux, leur permettant d’étendre leur occupation du territoire et s’inscrivant dans une dynamique de réaffirmation identitaire et territoriale. Ils articulent ainsi les espaces de la forêt et des bourgs. Cette forme d’exploitation multi-locale du territoire peut être interprétée comme une nouvelle forme de gouvernance environnementale, qui leur permet de contourner les difficultés et d’affirmer leur souveraineté sur le territoire.
Indigenous territories comprise extensive areas of tropical forest and hold significant social and conservation value. Today, they are subject to various constraints and opportunities and face many territorial transformations. These transformations are complex and multifaceted. They involve the adoption of new production and consumption modes, the medications of forms of social organization and identity and territorial claims. However, the links between these on-going processes are still poorly understood, and make difficult to appreciate the adaptation dynamics of indigenous common natural resources management. This thesis is particularly concerned with the territorial dynamics of the wayapi and teko indigenous people of the municipality of Camopi in French Guyana. It integrates methods that include land use analysis using remotely sensed data, socio-economic and agricultural systems analysis at the household scale, and empirical analysis on the influence of identity claims, kinship networks, and conservation policies. It shows that despite the residential settlement around local towns, the growth of cash income from wage labour and welfare, associated with strong kinship networks, allows the revival of mobility and the diversification of indigenous territorialities. Environment policies implemented on the territory involve processes of identity and territorial claims and motivate the construction of a collective project of endogenous local development. A comparative approach with the situation of the Wayapi people living in Brazil, and evolving in a completely different institutional, socio-economic and environmental context shows similar dynamics. Indigenous people of these two sites adopt “multi-local” land use systems, allowing them to extend their territory occupation and taking part of a broader dynamic of territorial and identity affirmation. They articulate forest and local town environments. This multi-local land use sytem can be interpreted as a new form of environmental governance, which overcomes the difficulties access to natural resources around local towns and ensure their sovereignty over the territory.

http://www.theses.fr/2013AGUY0608/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In fold and thrust belts drainage organization and patterns of sedimentation depend conceptually on the ability or not for preexisting reaches to incise uplifting thrust sheets. In this study we investigate experimentally the dynamics of drainage network in a wedge submitted to shortening and erosion. It allows us to reproduce and to monitor the interactions between tectonics, erosion and sedimentation during the development of up to five successive thrust sheets. In the experiments channels adjust to uplift rate by both increasing their slope and narrowing their channels as it is observed in nature. The series of experiments shows that the proportion of persistent preexisting transverse channels increases with the ratio of rainfall over shortening rates. The experiments confirm the view that the competition between discharge and tectonic uplift controls along-strike variations in sediment flux in sedimentary basins by controlling the drainage organization. If the transverse channels draining a wedge are not diverted, a line-source dispersal system develops in front of the active structure. If channels are diverted in the backlimb of the frontal structure it results in point-sourced depositional systems separated by areas fed only by small channels developing in the front of the wedge. Fans accumulated in front of the active structures reveal two stages of sedimentation, one of progradation, while the frontal structure is active and a second one of valley backfilling and thrust sealing during internal deformation of the wedge. The experiments also suggest that spatial variations in rock uplift rate along a thrust front may be evidenced by minimum-discharge variations of persistent transverse channels.
ISSN: 0040-1951

insu-01252482
https://hal-insu.archives-ouvertes.fr/insu-01252482
DOI : 10.1016/j.tecto.2015.09.007

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Epigenetics is most often reduced to chromatin marking in the current literature, whereas this notion was initially defined in a more general context. This restricted view ignores that epigenetic memories are in fact more robustly ensured in living systems by steady-state mechanisms with permanent molecule renewal. This misconception is likely to result from misleading intuitions and insufficient dialogues between traditional and quantitative biologists. To demystify dynamic epigenetics, its most famous image, a Waddington landscape and its attractors, are explicitly drawn. The simple example provided, is sufficient to highlight the main requirements and characteristics of dynamic gene networks, underlying cellular differentiation, de-differentiation and trans-differentiation.
ISSN: 0248-4900

inserm-00920766
http://www.hal.inserm.fr/inserm-00920766
http://www.hal.inserm.fr/inserm-00920766/document
http://www.hal.inserm.fr/inserm-00920766/file/Dynamic_Epigenetics.pdf
PUBMED : 24111561

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Wind energy production is very sensitive to turbulent wind, in particular when wind power variations range from few seconds to 1 hour, are considered. Indeed rapid changes in the local meteorological condition as observed in tropical climate can provoke large variations of wind speed. Consequently the electric grid security can be jeopardized due to these fluctuations. This is particularly the case of island networks as in the Guadeloupean archipelago (French West Indies) where the installed 20 MW wind power already represents 11% of the electrical consumption. From 1 million wind sequences of duration 10 minutes, sampled at 1 Hz during the trade season, we proceed toward two objectives: i) the characterization of the wind speed sequences, ii) the dynamical simulation of the wind sequences using Langevin equation.
Progress in Turbulence and Wind Energy IV

ISBN : 978-3-642-28968-2.
hal-01527883
https://hal.archives-ouvertes.fr/hal-01527883
DOI : 10.1007/978-3-642-28968-2-50

Éditeur(s) : HAL CCSD
Résumé : International audience
The study of complex biological processes requires to forgo simplified models for extensive ones. Yet, these models' size and complexity place them beyond understanding. Their analysis requires new methods for identifying general patterns. The Transforming Growth Factor TGF-β is a multifunctional cytokine that regulates mammalian cell development , differentiation, and homeostasis. Depending on the context, it can play the antagonistic roles of growth inhibitor or of tumor promoter. Its context-dependent pleiotropic nature is associated with complex sig-naling pathways. The most comprehensive model of TGF-β-dependent signaling is composed of 15,934 chains of reactions (trajectories) linking TGF-β to at least one of its 159 target genes. Identifying functional patterns in such a network requires new automated methods. This article presents a framework for identifying groups of similar trajec-tories composed of the same molecules using an exhaustive and without prior assumptions approach. First, the trajectories were clustered using the Relevant Set Correlation model, a shared nearest-neighbors clustering method. Five groups of trajectories were identified. Second, for each cluster the over-represented molecules were determined by scoring the frequency of each molecule implicated in trajectories. Third, Gene set enrichment analysis on the clusters of trajectories revealed some specific TGF-β-dependent biological processes, with different clusters associated to the antagonists roles of TGF-β. This confirms that our approach yields biologically-relevant results. We developed a web interface that facilitates graph visualization and analysis. Our clustering-based method is suitable for identifying families of functionally-similar trajectories in the TGF-β signaling network. It can be generalized to explore any large-scale biological pathways.
CMSB 2017 - 15th International Conference on Computational Methods in Systems Biology
Darmstadt, France

hal-01559249
https://hal.archives-ouvertes.fr/hal-01559249
https://hal.archives-ouvertes.fr/hal-01559249/document
https://hal.archives-ouvertes.fr/hal-01559249/file/JeanCoquet_CMSB.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
In real world situations, each person is generally in contact with only a small fraction of the entire population and exchange information through these interactions. Their number and their frequency vary from one to another individual and may be much depending on mobility of individuals. The objective of this article is to better understand how human mobility may have an impact on mobile social networking systems. This should help to answer a question as: "How might an information, a rumor, a pathogen, etc., driven by physical proximity, spread through a population?". We present a first stage of our work in which we focus on percolation processes as information flow mechanisms. We propose a synthetic mobility model and we define an artificial world populated by heterogeneous agents who differ in their mobility. Simulations are conducted on a multi-agent programmable environment. Our experimental results clearly demonstrate positive correlations between agent mobility factors and percolation thresholds.
Procedia CS

hal-00767043
https://hal.archives-ouvertes.fr/hal-00767043
DOI : 10.1016/j.procs.2012.06.007

Éditeur(s) : HAL CCSD
Résumé : The evolution of mountain belt piedmont is controlled by interactions between tectonics, erosion and sedimentation. To study coupling between these processes, we analyze morphometric data collected in the eastern Tian Shan piedmont (NW China) and develop a new analogue modelling technique. The modeling approach uses an experimental set-up and analog material specifically designed to study simultaneously tectonic structures (faults, folds), detailed morphology (drainage basins, channels, alluvial fans, etc.) and stratified sedimentation. Measurement techniques based on laser interferometry and image correlation are also developed to quantify the topographic and kinematic evolution of models.
Our experiments allow a new approach for the study of piedmont morphotectonic evolution. Our results indicate that tectonics mainly controls this evolution. The propagation of deformation and the formation of relief both significantly influence the development of drainage networks, the evolution of drainage basins and the formation of morphotectonic markers. Particularly, a study of alluvial fans and watershed metrics suggests that there is a dynamical equilibrium between uplift, erosion and morphology. In addition, our results show that terrace nucleation is controlled by thrust activity and hydrography adjustments. Folding of terraces responds to a homothetic deformation pattern.
This new methodology brings promising perspectives in the fields of geomorphology, seismotectonics and sedimentology.
L'évolution d'un piémont de chaîne de montagnes est contrôlée par les interactions entre la tectonique, l'érosion et la sédimentation. Pour étudier ces processus, nous avons analysé des données morphométriques issues des piémonts orientaux du Tian Shan (NW Chine) et développé un nouveau type de modélisation analogique. Cette approche utilise un dispositif et un matériau expérimental spécialement conçus pour modéliser simultanément des structures tectoniques (failles, plis), une morphologie détaillée (bassins versants, rivières, cônes alluviaux, etc.) et une sédimentation stratifiée. Des techniques de mesure optique ont été également mises en oeuvre afin de quantifier l'évolution topographique et cinématique des modèles.
Les expériences réalisées offrent une opportunité inédite d'étudier l'évolution morphotectonique d'un piémont. Nos résultats montrent que la tectonique exerce un contrôle de premier ordre sur cette évolution. La propagation de la déformation et la formation des reliefs influencent en effet significativement le développement du réseau de drainage, l'évolution des bassins versants et la formation des marqueurs morphotectoniques. En particulier, l'analyse de la morphométrie des cônes alluviaux et de leurs bassins versants suggère qu'un équilibre dynamique s'installe entre la surrection, l'érosion et la morphologie. Nos résultats montrent également que l'apparition des terrasses est guidée par l'activité des chevauchements et les adaptations de l'hydrographie. Leur modèle de plissement répond à une déformation homothétique.
Cette nouvelle approche ouvre des perspectives d'étude prometteuses en géomorphologie, sismotectonique et stratigraphie.
https://tel.archives-ouvertes.fr/tel-00339145

tel-00339145
https://tel.archives-ouvertes.fr/tel-00339145
https://tel.archives-ouvertes.fr/tel-00339145v2/document
https://tel.archives-ouvertes.fr/tel-00339145/file/These_Graveleau08.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Positive aboveground biomass trends have been reported from old-growth forests across the Amazon basin and hypothesized to reflect a large-scale response to exterior forcing. The result could, however, be an artefact due to a sampling bias induced by the nature of forest growth dynamics. Here, we characterize statistically the disturbance process in Amazon old-growth forests as recorded in 135 forest plots of the RAINFOR network up to 2006, and other independent research programmes, and explore the consequences of sampling artefacts using a data-based stochastic simulator. Over the observed range of annual aboveground biomass losses, standard statistical tests show that the distribution of biomass losses through mortality follow an exponential or near-identical Weibull probability distribution and not a power law as assumed by others. The simulator was parameterized using both an exponential disturbance probability distribution as well as a mixed exponential-power law distribution to account for potential large-scale blowdown events. In both cases, sampling biases turn out to be too small to explain the gains detected by the extended RAINFOR plot network. This result lends further support to the notion that currently observed biomass gains for intact forests across the Amazon are actually occurring over large scales at the current time, presumably as a response to climate change.
ISSN: 1354-1013

hal-01032162
https://hal.archives-ouvertes.fr/hal-01032162
DOI : 10.1111/j.1365-2486.2009.01891.x

Éditeur(s) : HAL CCSD
Résumé : International audience
The general context of this paper is the Bass model which presented a theory of the adoption of new products. We propose an agent based modelling to allow to model the respective grow of competing products. We assume that there is competition for the same market among two trademarks: each one has its own rate of spontaneous innovation and its own rate of imitation. This paper deals with the relative weight of these competing behaviors on the global dynamics; in particular, we ask the question of the equivalence between mass media influence and word-of-mouth effect.
IEEE RCIS 2014 Eighth International Conference on Research Challenges in Information Science
Marrakech, Morocco

hal-01288467
https://hal.archives-ouvertes.fr/hal-01288467
https://hal.archives-ouvertes.fr/hal-01288467/document
https://hal.archives-ouvertes.fr/hal-01288467/file/poster.pdf