Éditeur(s) : HAL CCSD
Résumé :   Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
La lumière est le principal facteur limitant de la croissance en forêt tropicale humide. Malgré 1% du rayonnement incendie disponible en sous-bois, les jeunes arbres doivent rejoindre la canopée pour assurer la régénération du couvert. La compétition pour l'accès à la lumière est forte, et leur stabilité mécanique est souvent perturbée. La gravité étant un facteur omniprésent , tout déséquilibre entraîne des flexions de l'arbre et peut-être dramatique. Les arbres peuvent cependant palier ces déséquilibres en réorientant leurs axes par gravitropisme. Les "moteurs" des réorientations dans les axes lignifiés, sont la croissance radiale, la différentiation de bois de réaction et souvent, une croissance radiale excentrée.La capacité au redressement dépend aussi des dimensions des axes. Ces différents paramètres modulent donc la réponse gravitropique. Les réorientations dépendent de la croissance et donc également des ressources en lumière. Ce travail avait pour buts de quantifier l'impact de la croissance radiale sur le redressement d'une espèce tropicale et de mettre en évidence d'éventuelles différences d'efficience, de réorientation des arbres en fonction de la disponibilité en lumière. La réponse gravitropique de jeunes Symphonia globulifera artificiellement inclinés a été étudiée sous deux niveaux de lumière (1% et 25%°). L'importance de la croissance radiale dans la réaction gravitropique a été quantifiée par une analyse cinématique du redressement et l'utilisation d'un modèle biomécanique simple. Ce travail montre que même à 1% de lumière, les arbres ont une réponse gravitropique. L'efficience de réaction est d'ailleurs plus forte qu'à 25% de lumière. Cette réaction semble donc être une fonction prédominante pour les plantes en sous-bois. Nous avons également montré que le redressement est fortement corrélé à la vitesse de croissance radiale. Les données obtenues complètent celles déjà acquises sur des espèces tempérées. Elles permettront des comparaisons interspécifiques du processus gravitropique et serviront à valider des modèles biomécaniques plus complexes que celui utilisé dans cette étude.
https://hal.archives-ouvertes.fr/hal-01189227

hal-01189227
https://hal.archives-ouvertes.fr/hal-01189227
PRODINRA : 16967

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
ABSTRACT: BACKGROUND: Climate change poses unprecedented challenges, ranging from global and local policy challenges to personal and social action. Heat-related deaths are largely preventable, but interventions for the most vulnerable populations need improvement. Therefore, the prior identification of high risk areas at the community level is required to better inform planning and prevention. We aimed to demonstrate a simple and flexible conceptual framework relying upon satellite thermal data and other digital data with the goal of easily reproducing this framework in a variety of urban configurations. RESULTS: The study area encompasses Rennes, a medium-sized French city. A Landsat ETM + image (60 m resolution) acquired during a localized heatwave (June 2001) was used to estimate land surface temperature (LST) and derive a hazard index. A land-use regression model was performed to predict the LST. Vulnerability was assessed through census data describing four dimensions (socio-economic status, extreme age, population density and building obsolescence). Then, hazard and vulnerability indices were combined to deliver a heatwave health risk index. The LST patterns were quite heterogeneous, reflecting the land cover mosaic inside the city boundary, with hotspots of elevated temperature mainly observed in the city center. A spatial error regression model was highly predictive of the spatial variation in the LST (R2 = 0.87) and was parsimonious. Three land cover descriptors (NDVI, vegetation and water fractions) were negatively linked with the LST. A sensitivity analysis (based on an image acquired on July 2000) yielded similar results. Southern areas exhibited the most vulnerability, although some pockets of higher vulnerability were observed northeast and west of the city. The heatwave health risk map showed evidence of infra-city spatial clustering, with the highest risks observed in a north--south central band. Another sensitivity analysis gave a very high correlation between 2000 and 2001 risk indices (r = 0.98, p < 10-12). CONCLUSIONS: Building on previous work, we developed a reproducible method that can provide guidance for local planners in developing more efficient climate impact adaptations. We recommend, however, using the health risk index together with hazard and vulnerability indices to implement tailored programs because exposure to heat and vulnerability do not require the same prevention strategies.
ISSN: 1476-072X

inserm-00762303
http://www.hal.inserm.fr/inserm-00762303
http://www.hal.inserm.fr/inserm-00762303/document
http://www.hal.inserm.fr/inserm-00762303/file/1476-072X-11-38.pdf
DOI : 10.1186/1476-072X-11-38

Éditeur(s) : HAL CCSD CSIRO Publishing
Résumé :  
Leaf traits of tropical tree species display an important inter-specific diversity, as detected for instance in the large range of values of leaf mass : area ratio (LMA). They also demonstrate a large irradiance-elicited plasticity, but there is still debate whether this plasticity differs among species. To address this question, leaf traits were recorded on saplings from 12 rainforest tree species in French Guiana, grown under approximately 5, 10 and 20% relative irradiance. Fifteen structural and physiological leaf traits related to photosynthesis were measured. The irradiance-elicited plasticity was quantified using a relative distance plasticity index. A large inter-specific diversity was detected for all leaf traits. A principal component analysis opposed species with a large mass-based photosynthesis, respiration, N content and photosynthetic nitrogen use efficiency, to species with a large leaf mass : area ratio, LMA. The two pioneer species used in this study displayed the largest photosynthetic capacity (and lowest LMA) and ranked at one end of the species continuum. Relative irradiance affected almost all traits with the exception of mass-based photosynthesis.Aweak interaction was found between species and relative irradiance and the species ranking was maintained among relative irradiance treatments for the majority of the traits. A principal component analysis of the values of relative-distance plasticity index failed to reveal any consistent patterns of traits or species.Weconcluded that irradiance-elicited plasticity of leaf traits was similar among species irrespective ofLMA and successional status, despite the occurrence of a large inter-specific diversity for the investigated traits
ISSN: 1445-4408

hal-01032129
https://hal.archives-ouvertes.fr/hal-01032129
DOI : 10.1071/FP09119

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
With only a narrow opening through the Gibraltar and Suez Canals, the Mediterranean Sea is one of thelargest semi-enclosed seas. The marine flora and fauna are some of the richest in the world, relative to itssize, particularly in the coastal habitats, which are also characterized by numerous endemic speciesalthough the introduction of non-indigenous species threatens its rich and unique biodiversity. Followingthe opening of the Suez Canal, and in combination with shipping and aquaculture activities, nonindigenousspecies (NIS) introduction has had measurable impacts on the Mediterranean. Lagoon ecosystemsalong the French coastline, with approx. 100 NIS identified, are considered hot-spot areas forthese species. Rapid assessment sampling for sessile benthic species together with DNA barcoding is arapid, easy and cheap method to detect non-indigenous species. Two nearby and different ecosystemswere sampled for invertebrate species: Saint-Nazaire lagoon, a Special Protection Area within the Natura2000 Network and Canet port, a marina in a small village. The DNA barcoding tool for species identificationwas used for confirming the taxonomy. This showed that, despite the Saint-Nazaire Lagoonclassification within the Natura 2000 network, it is already contaminated with a single NIS that wasfound in high densities and is clearly beginning to dominate the system. It is proposed that a rapidassessment of the sampled environment and the DNA barcode approach are efficient and can providesufficient information on the new target species to be used in conservation planning and ongoingmanagement efforts.
ISSN: 0272-7714

hal-01488926
https://hal-univ-perp.archives-ouvertes.fr/hal-01488926
DOI : 10.1016/j.ecss.2017.02.004

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Heterocyclic aromatic amines (HAA) are formed in cooked meat, poultry and fish but also arise in tobacco smoke and exhaust gases. HAA are potential human carcinogens, which require metabolic activation to exert their genotoxicity. Human tissues can bioactivate HAA to produce reactive intermediates that bind to DNA. HAA DNA adduct formation occurs in human hepatocytes; however, the potential of HAA to form DNA adducts has not been investigated in human T lymphocytes. In this study, we investigated the ability of human T lymphocytes activated with PMA/Ionomycin or CD3/CD28 to express functional CYP1 activity and bioactivate three major HAA: 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx), and 2-amino-9H-pyrido[2,3-b]indole (AαC) to form DNA adducts. Adducts were measured by ultraperformance liquid chromatography-electrospray ionization/multistage scan mass spectrometry. The highest level of DNA adducts occurred for AαC (16 adducts per 109 nucleotides), followed by PhIP (9 adducts per 109 nucleotides). In contrast, DNA adducts formed from MeIQx and the structurally related aromatic amine 4-aminobiphenyl, a known human carcinogen, were below the limit of detection (< 3 adducts per 109 nucleotides). Moreover, we demonstrate that AαC is a potent inducer of CYP1A1 and CYP1B1 activity through a transcriptional mechanism involving the AhR pathway. Overall, our results highlight the capacity of activated human T lymphocytes to more efficiently bioactivate AαC to form DNA adducts than other prominent HAA or 4-ABP. Environ. Mol. Mutagen. 57:656-667, 2016.
ISSN: 0893-6692

hal-01400486
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01400486
DOI : 10.1002/em.22059
PUBMED : 27801952

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Regeneration of artificially induced lesions was monitored in nubbins of the branching coral Acropora muricata at two reef-flat sites representing contrasting environments at Réunion Island (21u079S, 55u329E). Growth of these injured nubbins was examined in parallel, and compared to controls. Biochemical compositions of the holobiont and the zooxanthellae density were determined at the onset of the experiment, and the photosynthetic efficiency (F v /F m) of zooxanthellae was monitored during the experiment. Acropora muricata rapidly regenerated small lesions, but regeneration rates significantly differed between sites. At the sheltered site characterized by high temperatures, temperature variations, and irradiance levels, regeneration took 192 days on average. At the exposed site, characterized by steadier temperatures and lower irradiation, nubbins demonstrated fast lesion repair (81 days), slower growth, lower zooxanthellae density, chlorophyll a concentration and lipid content than at the former site. A trade-off between growth and regeneration rates was evident here. High growth rates seem to impair regeneration capacity. We show that environmental conditions conducive to high zooxanthellae densities in corals are related to fast skeletal growth but also to reduced lesion regeneration rates. We hypothesize that a lowered regenerative capacity may be related to limited availability of energetic and cellular resources, consequences of coral holobionts operating at high levels of photosynthesis and associated growth.
ISSN: 1932-6203

hal-01369712
http://hal.univ-reunion.fr/hal-01369712
http://hal.univ-reunion.fr/hal-01369712/document
http://hal.univ-reunion.fr/hal-01369712/file/journal.pone.0072618.PDF
DOI : 10.1371/journal.pone.0072618

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : For Norwegians the name of our country is based on a route - "the way to the North" - and this was not a built route but using of the coast-line itself. As long as the boats and ships were the main means of travel this coastal way - "Nor-way" - was the main communication basis for most people, and for transport of goods. But even in the interior of the country, water, namely rivers and lakes were the main structures for communication. The lakes were most efficient for transport during the cold winters, by sledges on the frozen surfaces.When new means of transport took over most of the traffic, however, sea, lakes and rivers in many ways became obstacles instead of means of communication (?). This gave the government and others new challenges. In the sailing period up to the end of the eighteen hundreds, boats and harbors were the investment focus and sailors were recruited in every community from the age of 15. This meant that in a remote area at the Arctic Circle there were plenty of people who have been sailing around most of the work and could easily be hosts of visitors.This paper is mostly focusing on "how to market and develop these beautiful coastal areas to travelers using either their own cars, bikes, boats or collective transport". What types of geographical units are suited for marketing and developing such areas and how might local producers of accommodation, food & beverages, crafts, activities and arts be included in such organizations. The main focus will be on the work of organization "Kystriksvegen Reiseliv AS" that have been working with these challenges for closed to two decades. What have their successes and obstacles been and how have they been able to operate a sustainable business on a long coastal route with many car ferries, small islands, fjords and mountains and more than twenty municipalities.
Pour les Norvégiens, le nom de notre pays est basé sur un itinéraire - «le chemin vers le Nord» - et ce n'était pas une route construite, mais qui repose sur la ligne de côte elle-même. Tant que les bateaux et les navires étaient le principal moyen de déplacement de cette façon côtière – "Nor-way" - était la base principale de communication pour la plupart des gens et pour le transport de marchandises, et même à l'intérieur du pays, l'eau, à savoir les rivières et les lacs étaient les principales structures de communication. Les lacs sont les plus efficaces pour le transport pendant les hivers froids, par traîneaux sur les surfaces gelées.Avec l’arrivée des nouveaux moyens de transport, la mer, les lacs et les rivières à bien des égards, sont devenus obstacles (?). Cela a donné de nouveaux défis au gouvernement. A l’époque de la voile jusqu'à la fin des dix-huit centaines, des bateaux et des ports ont été l'objet d'investissements et les marins ont été recrutés dans toutes les collectivités dès l’âge de 15 ans. Cela signifie que dans une région éloignée dans le cercle arctique, il y avait beaucoup de gens qui étaient navigateurs et pouvaient facilement être les hôtes de visiteurs.Ce document est principalement axé sur «la façon de commercialiser et de développer ces belles régions côtières de voyageurs qui utilisent soit leurs propres voitures, motos, bateaux ou de transports collectifs». Quels types d'unités géographiques sont adaptés pour la commercialisation et le développement de ces régions ? Comment les producteurs locaux d'hébergement, de nourriture et de boissons, d’artisanat, les activités et les arts sont inclus dans ces organisations ? L'accent principal sera mis sur le travail de l’organisation "Reiseliv AS Kystriksvegen" qui a travaillé sur ces défis de fermeture depuis deux décennies. Quelles ont été leurs réussites et obstacles, et comment ont-ils pu exploiter une entreprise durable sur une longue route côtière avec des car-ferries, de nombreuses petites îles, des fjords et des montagnes et plus d’une vingtaine de municipalités.
Norvège

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5286
http://journals.openedition.org/etudescaribeennes/5286

Éditeur(s) : HAL CCSD Taylor & Francis (Routledge)
Résumé : International audience
In this study, we analyzed the correlations between hip flexion power, sprint performance, lumbar lordosis (LL) and the cross-sectionalarea (CSA) of the psoas muscle (PM). Ten young adults performed isokinetic tests to determine hip flexion power and two sprinttests. Magnetic resonance imaging was used to determine LL and PM CSA. There were correlations between hip flexion power, sprintperformance, and PM CSA, but LL showed no correlation with any parameter. The impact of hip flexion power and LL on sprintstride pattern efficiency was considered. Hip flexion might not have a simple role in the passive knee replacement of the stride pattern;instead, it may be an active parameter. Other investigations are needed to determine the influence of pelvic architecture on sprintperformance.
ISSN: 0270-1367

hal-01143531
https://hal.univ-antilles.fr/hal-01143531

Éditeur(s) : Elsevier
Résumé : The uptake and loss kinetics of Cd were determined in two species of scallops from the European coasts, the variegated scallop Chlamys varia and the king scallop Pecten maximus, following exposures via seawater, phytoplankton and sediment using highly sensitive radiotracer techniques (Cd-109). Results indicate that, for seawater and dietary pathways, C. varia displays higher bioaccumulation capacities in terms of uptake rate from water and fraction absorbed from ingested food (assimilation efficiency) than Pecten maximus. Regarding sediment exposure, P. maximus displayed low steady-state Cd transfer factor (TFSS < 1); however, once incorporated, a very large part of Cd transferred from sediment (92%) was strongly retained within R maximus tissues. Both species showed a high retention capacity for Cd (biological half-life, T-b1/2 > 4 months), suggesting efficient mechanisms of detoxification and storage in both species. The digestive gland was found to be the main storage organ of Cd in the two scallops regardless of the exposure pathway. However, Cd was stored differently within this organ according to the species considered: 40% of the total Cd was found in the soluble cellular fraction in C. varia whereas this soluble fraction reached 80% for P. maximus. This suggests that the two species displayed different Cd detoxification/storage mechanisms. Finally, the present study has determined the relative contribution of the different exposure pathways to global Cd bioaccumulation for the two scallop species. Results clearly show that for both species, food constitutes the major accumulation pathway, contributing for >99% and 84% of the global Cd bioaccumulation in C. varia and R maximus, respectively. This work confirms the previous assumption, derived from a bibliographic overview, that dietary pathway plays a prevalent role in metal bioaccumulation in Pectinidae. (C) 2007 Elsevier B.V. All rights reserved.
Journal of Experimental Marine Biology and Ecology (0022-0981) (Elsevier), 2007-12 , Vol. 353 , N. 1 , P. 58-67

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3581.pdf
DOI:10.1016/j.jembe.2007.09.001
http://archimer.ifremer.fr/doc/00000/3581/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The full numerical simulation of turbulent flows in the context of industrial applications remains a very challenging problem. One of the difficulties is the presence of a large number of interacting scales of different orders of magnitude, ranging from the macroscopic scale to the Kolmogorov dissipation scale. In order to better understand and simulate these interactions, new algorithms of incremental type have recently been introduced, stemming from the theory of infinite-dimensional dynamical systems (see, e.g., the algorithms of Foias, Jolly et al. (1988), Foias, Manley and Temam (1988), Laminie et al. (1993, 1994), Marion and Temam (1989, 1990), and Temam (1990)). These algorithms are based on decompositions of the unknown functions into a large- and a small-scale component, one of the underlying ideas being to approximate the corresponding attractor. In the context of finite element methods, the decomposition of a solution into small- and large-scale components appears when we consider hierarchical bases (Yserentant, 1986; Zienkiewicz et al., 1982). In the present article we derive several estimates of the size of the structures for the linear and nonlinear terms which correspond to interactions of different hierarchical components of the velocity field, and also their time variation. The one-step time variation of these terms can be smaller than the expected accuracy of the computation. Using this remark, we implement an adaptive spatial and temporal multilevel algorithm which treats differently the small- and large-scale components of the flow. We derive several a priori estimates in order to study the perturbation introduced into the approximated equations. All the interaction terms between small- and large-scale structures are frozen during several time steps. Finally, we implement the multilevel method in order to simulate a bidimensional flow described by the Burgers equations. We perform a parametric study of the procedure and its efficiency. The gain in CPU time is significant and the trajectories computed by our multi-scale method remain close to the trajectories obtained with the classical Galerkin method.
ISSN: 0168-9274

hal-00730710
https://hal.archives-ouvertes.fr/hal-00730710

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Numerous methods have been proposed in order to perform clustering from social networks. While significant works have been carried out on the design of new approaches, able to search for various kinds of clusters, a major challenge concerns the scalability of these approaches. Indeed, given the mass of data that can now be collected from online social networks, particularly from social platforms, it is important to have efficient methods for exploring and analyzing these very large amount of data. One of the recent social network clustering approaches is the extraction of conceptual links, a new approach that performs link clustering by exploiting both the structure of the network and attributes of nodes to identify strong links between groups of nodes in which nodes share common attributes. In this paper, we focus on the optimization of the search for conceptual links. In particular, we propose PALM, a parallel algorithm that aims to improve the efficiency of the extraction by simultaneously exploring several areas of the search space. For this purpose, we begin by demonstrating that the solution space forms a concept lattice. Then, we propose an approach that explores in parallel the branches of the lattice while reducing the search space based on various properties of conceptual links. We demonstrate the efficiency of the algorithm by comparing the performances with the original extraction approach. The results obtained show a significant gain on the computation time.
28th International Conference on Database and Expert Systems Applications (DEXA)
Lyon, France

hal-01637554
https://hal.archives-ouvertes.fr/hal-01637554
DOI : 10.1007/978-3-319-64471-4_21

Éditeur(s) : Institut national agronomique Paris Grignon
Résumé : The flat oyster Ostrea edulis L. is the indigenous oyster of the Atlantic as well as the Mediterranean coasts of Europe. Its commercial exploitation dates back to Antiquity but its breeding is now threatened by two parasitic protozoa, among which Bonamia ostreae. Various aspects of the genetics of this species' natural and farmed populations have been studied with the aid of microsatellite markers. At first, the implementation and the screening of two partial genomic libraries made it possible to identify 28 new microsatellite loci. Analysis of the segregation of 12 of these loci and of two enzymatic loci shows that most microsatellite loci are transmitted in a Mendelian way, but some loci have significant segregation distortions. Moreover, seven linkage groups, of which four contain at least two markers, were identified in Ostrea edulis. The genetic variability of three populations selected for one or two generations for resistance to Bonamia ostreae was analysed with the aid of 5 microsatellite loci. In spite of the absence of genealogical data, we have shown that these selected populations were descended from a very low number of founding genitors (from 3 to 15 depending on the population) and for two populations, we were able to reconstruct the genealogy and the relationships between the individuals were identified. These selected populations have, in addition to a very low genetic variability, real and at times high levels of consanguinity. These results have a significant implication for the continuation of the selection programme (consanguinity management, augmentation of genetic variability by introducing wild genitors). The geographical structuring of the genetic variability of natural populations of Ostrea edulis has been analysed with the aid of 5 microsatellite loci on a sampling covering almost the entire distribution area of the species (from Norway to the Adriatic Sea). The results are consistent with those published in the literature and using enzymatic markers. The populations show a low level of differentiation that could correspond to a model of isolation by distance. The Atlantic populations, which have a reduced polymorphism, could be descended from post-glacial recolonisation from Mediterranean populations that had survived the glaciations of the Quaternary Period. The current distribution of flat oyster populations is surely also subject to anthropogenic activities. Finally, the genetic bases of the heterozygosis-growth correlation were studied in a natural population with the aid of enzymatic and microsatellite markers. Although leads favouring the direct contribution of enzymatic loci have been found, biases in the sampling design make it impossible to come to a formal conclusion. However, this study has made it possible to show that the capture of individuals over a short period (around ten days) leads to a sampling of a population descended from a very low number of founding genitors, in contradiction with the generally accepted idea that marine bivalve populations are large panmictic populations with significant, efficient numbers. These results confirm in a natural population the observations of a significant reduction of efficient sizes in hatchery populations.
L'huître plate Ostrea edulis L. est l'huître indigène des côtes européennes aussi bien atlantiques que méditerranéennes. Son exploitation commerciale remonte à l'Antiquité mais son élevage est aujourd'hui menacé par deux protozoaires parasites dont Bonamia ostreae. Différents aspects de la génétique des populations naturelles et cultivées de cette espèce ont été étudiés à l'aide de marqueurs microsatellites. Dans un premier temps, la réalisation et le criblage de deux banques génomiques partielles ont permis l'identification de 28 nouveaux locus microsatellites. L'analyse de la ségrégation de 12 de ces locus et de deux locus enzymatiques montre que la plupart des locus microsatellites sont transmis de façon mendélienne, mais certains locus présentent des distorsions de ségrégation importantes. Par ailleurs, sept groupes de liaison dont quatre contiennent au moins deux marqueurs ont été identifiés chez Ostrea edulis. La variabilité génétique de trois populations sélectionnées depuis une ou deux générations pour une résistance à Bonamia ostreae a été analysée à l'aide de 5 locus microsatellites. Malgré l'absence de données généalogiques, nous avons montré que ces populations sélectionnées étaient issues d'un très faible nombre de géniteurs fondateurs (de 3 à 15 selon les populations) et pour deux populations, la généalogie a pu être reconstituée et les liens de parenté entre les individus ont été identifiés. Ces populations sélectionnées présentent, outre une très faible variabilité génétique, des niveaux de consanguinité réels et parfois élevés. Ces résultats ont une implication importante pour la continuation du programme de sélection (gestion de la consanguinité, augmentation de la variabilité génétique par introduction de géniteurs sauvages). La structuration géographique de la variabilité génétique des populations naturelles d'Ostrea edulis a été analysée à l'aide de 5 locus microsatellites sur un échantillonnage couvrant presque toute l'aire de répartition de l'espèce (de la Norvège à la Mer Adriatique). Les résultats sont cohérents avec ceux publiés dans la littérature et utilisant des marqueurs enzymatiques. Les populations montrent un niveau de différenciation faible qui pourrait correspondre à un modèle d'isolement par la distance. Les populations atlantiques, qui présentent un polymorphisme réduit, pourraient être issues de recolonisation post-glaciaire à partir de populations méditerranéennes ayant survécu aux glaciations du Quaternaire. La répartition actuelle des populations d'huître plate est certainement aussi soumise aux actions anthropiques. Enfin, les bases génétiques de la corrélation hétérozygotie-croissance ont été étudiées dans une population naturelle à l'aide de marqueurs enzymatiques et microsatellites. Bien que des pistes en faveur de la contribution directe des locus enzymatiques aient été trouvées, des biais dans le dispositif expérimental ne permettent pas de conclure de façon formelle. Cependant, cette étude a permis de montrer que le captage d'individus sur une faible période (une dizaine de jours) conduit à l'échantillonnage d'une population issue d'un nombre très réduit de géniteurs fondateurs, en contradiction avec l'idée reçue que les populations de bivalves marins sont de larges populations panmictiques à effectif efficace important. Ces résultats confirment dans une population naturelle les observations de réduction importante des tailles efficaces dans des populations d'écloserie.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1998/these-1919.pdf
http://archimer.ifremer.fr/doc/00000/1919/

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Herbivory is viewed as a major driver of plant evolution and the mostimportant energy pathway from plants to higher trophic levels. Therefore, understandingpatterns of herbivory on plants remains a key focus in evolution and ecology. Theevolutionary impacts of leaf herbivory include altering plant fitness, local adaptation, theevolution of defenses, and the diversification of plants as well as natural enemies. Leafherbivory also impacts ecological processes such as plant productivity, communitycomposition, and ecosystem nutrient cycling. Understanding the impact of herbivory onthese ecological and evolutionary processes requires species-specific, as opposed tocommunity-level, measures of herbivory. In addition, species-specific data enables the use ofmodern comparative methods to account for phylogenetic non-independence. Althoughhundreds of studies have measured natural rates of leaf consumption, we are unaware of anyaccessible compilation of these data. We created such a data set to provide the raw dataneeded to test general hypotheses relating to plant–herbivore interactions and to test theinfluence of biotic and abiotic factors on herbivory rates across large spatial scales. A largerepository will make this endeavor more efficient and robust. In total, we compiled 2641population-level measures for either annual or daily rates of leaf herbivory across 1145 speciesof vascular plants collected from 189 studies. All damage measures represent naturaloccurrences of herbivory that span numerous angiosperm, gymnosperm, and fern species. Toenable researchers to explore the causes of variation in herbivory and how these mightinteract, we added information about the study sites including: geolocation, climateclassification, habitat descriptions (e.g., seashore, grassland, forest, agricultural fields), andplant trait information concerning growth form and duration (e.g., annual vs. perennial). Wealso included extensive details of the methodology used to measure leaf damage, includingseasons and months of sampling, age of leaves, and the method used to estimate percentagearea missing. We anticipate that these data will make it possible to test important hypothesesin the plant–herbivore literature, including the plant apparency hypothesis, the latitudinalherbivorydefense hypothesis, the resource availability hypothesis, and the macroevolutionaryescalation of defense hypothesis.
ISSN: 0012-9658

hal-01601627
https://hal.archives-ouvertes.fr/hal-01601627
DOI : 10.1890/13-1741.1
PRODINRA : 397136
PUBMED : 24870043

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The current design studies on sodium-cooled fast reactors (SFRs) are breaking with the past since they are guided by a new set of design criteria arising from the objectives of Generation IV reactors. The new safety requirements lead to designing reactors with breakeven breeding cores because in terms of reactivity control, they minimize the need to limit the consequences of an inadvertent control rod withdrawal event. Furthermore, as the reactivity control needs are low, a breakeven core enables the use of absorbing materials with reduced efficiency (natural boron, hafnium, etc.), which may be less costly than enriched boron. However, control rods designed with low absorbing materials may present the disadvantage of a nonnegligible loss of efficiency due to their consumption under irradn. This paper presents a methodol. to accurately calc. and to analyze the impact of this consumption on reactivity control.
ISSN: 0302-2927

hal-01088526
https://hal.archives-ouvertes.fr/hal-01088526
DOI : 10.13182/NSE13-59

Éditeur(s) : HAL CCSD Instituto Oswaldo Cruz, Ministério da Saúde
Résumé : International audience
This study examined whether the antidermatophytic activity of essential oils (EOs) can be used as an indicator for the discovery of active natural products against Leishmania amazonensis. The aerial parts of seven plants were hydro-distilled. Using broth microdilution techniques, the obtained EOs were tested against three strains of dermatophytes (Trichophyton mentagrophytes, Microsporum gypseum and Microsporum canis). To compare the EOs antifungal and antiparasitic effects, the EOs activities against axenic amastigotes of L. amazonensis were concurrently evaluated. For the most promising EOs, their antileishmanial activities against parasites infecting peritoneal macrophages of BALB/c mice were measured. The most interesting antifungal candidates were the EOs from Cymbopogon citratus, Otacanthus azureus and Protium heptaphyllum, whereas O. azureus, Piper hispidum and P. heptaphyllum EOs exhibited the lowest 50% inhibitory concentration (IC 50) values against axenic amastigotes, thus revealing a certain correspondence between both activities. The P. hispidum EO was identified as the most promising product in the results from the infected macrophages model (IC 50 : 4.7 µg/mL, safety index: 8). The most abundant compounds found in this EO were sesquiter-penes, notably curzerene and furanodiene. Eventually, the evaluation of the antidermatophytic activity of EOs appears to be an efficient method for identifying new potential drugs for the treatment of L. amazonensis.
ISSN: 0074-0276

Droits : http://creativecommons.org/licenses/by/
hal-01230471
http://hal.upmc.fr/hal-01230471
http://hal.upmc.fr/hal-01230471/document
http://hal.upmc.fr/hal-01230471/file/0074-0276-mioc-0140332.pdf
DOI : 10.1590/0074-02760140332

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Oceanic larvae of the European (Anguilla anguilla) and American (A. rostrata) eels have to cross the Atlantic Ocean from the Sargasso Sea to European or North American coasts before entering continental habitats. In some European rivers, eel recruitment is now < 1% of levels in the 1980s. A better understanding of the effects of anthropogenic pressures and environmental fluctuations on eel larvae and subsequent recruitment is a prerequisite to build efficient management plans. The present paper provides insight into the critical oceanic phase of the eel life cycle with a focus on the duration of the larval migration whose estimates varies between 7 months and more than 2 years in both species. Does this range correspond to a natural variability in larval duration or does it stem from methodological artefacts? We first review the different methods used to estimate the duration of larval migration and critically describe their possible sources of misinterpretation. We then evaluate the consistency of these methods with the current knowledge about the ecology and physiology of eel larvae and the physical oceanography. While a moderate discrepancy in migration duration was found between methods for the American eel, the discrepancy was large in the European eel. In this species, otolith microstructure studies indicated migration durations between 7 and 9 months, while other methods pointed to durations of about 2 years. We show that estimates in favour of a long migration duration seem more robust to methodological caveats than methods estimating short durations of migration.
Fish And Fisheries (1467-2960) (Wiley-blackwell Publishing, Inc), 2010-09 , Vol. 11 , N. 3 , P. 289-306

Droits : 2010 Blackwell Publishing Ltd.
http://archimer.ifremer.fr/doc/00011/12208/9033.pdf
DOI:10.1111/j.1467-2979.2010.00362.x
http://archimer.ifremer.fr/doc/00011/12208/

Éditeur(s) : HAL CCSD
Résumé : International audience
In this paper we study how to detect anomalies in a distributed manner by using wireless sensor networks (WSN). We focus on a medical context, where existing works generally provide large environments to monitor patients using sensors as simple transducers. Those devices forward sensed health parameters to a main base station. This station collects received data and may perform some computations. In this paper, we perform some distributed tasks on the sensors. We propose a distributed algorithm which allows to raise alarms under some initial rules to alert efficiently medical staff in case of critical situations without needles warnings.
10th IEEE International Symposium on a World of Wireless, Mobile and Multimedia Networks, WOWMOM 2009.
KOS, Greece

hal-00519589
https://hal.archives-ouvertes.fr/hal-00519589

Résumé : Since 2000, the exploitation of the deep demersal fish (200-700 m) with the use of electric winches has been increasing in Reunion island ; and this has needed a new appraisal of yields (CPUE) and individual fish sizes, as indicators of the state of the fish stocks. A first survey has been carried out at the first half of 2011, in order to set up the comparison with a previous survey in 2000 on the West coast of Reunion island. Drops of yields and sizes could be pointed out, attesting the overexploitation of the commercial species (Fleury et al 2011). This present report displays the results of a second campaign, carried out in the second half of 2011 all around the island. 32 fishing trips have been conducted which have permitted 251 fishing operations. The overexploitation (i.e. decreasing of yields and fish sizes) has been confirmed in the West of the island, and in a lower stage in the North. Yields are better in the East and the South. As much as in the first survey, the small non commercial sharks (Squalus megalops) could be countered for half of the catches. At the same time, 2 hook sizes have been tested and the small hooks have displayed a better efficiency in number of catches but not in global weight. Various types of bait have been tested and meat of small local pelagic fish (Selar crumenophtalmus and Decapterus macarellus) have appeared to be the most efficient. This report provides helpful indicators for the management of fish stocks which have been poorly surveyed and poorly regulated till now.
Depuis 2000, la pêche aux poissons démersaux profonds (200-700 m) à l'aide de virelignes électriques s'est développée à La Réunion ; et le besoin se faisait sentir d'une évaluation des rendements (CPUE) et des tailles individuelles de capture, indicateurs halieutiques classiques des états de stocks. Une première campagne a été réalisée au 1er semestre 2011 pour établir la comparaison avec une campagne de prospection réalisée en 2000 dans l'ouest de La Réunion. Elle a mis en évidence des baisses marquées des rendements et des tailles de capture, signes d’une surexploitation des espèces commerciales (Fleury et al 2011). Ce rapport présente les résultats d'une 2e campagne de prospection étendue à tout le tour de l'île. 32 marées ont été réalisées permettant la mise à l'eau de 251 filages. La surpêche (baisse des rendements et des tailles de poisson) est confirmée dans l'ouest et à un moindre degré sur la côte nord. Les rendements sont meilleurs dans l'est et le sud. Comme dans la première campagne, les requins zépines (Squalus megalops), non commercialisés à La Réunion, représentent la moitié des captures. Parallèlement, 2 tailles d'hameçons ont été comparées et les petits hameçons ont donné une augmentation du nombre de captures, mais pas du poids global. Des comparaisons ont aussi porté sur les types d'appât et les laizes de petits pélagiques locaux (pêche-cavale et bancloche) se sont révèlées les plus efficaces. Ce rapport fournit des indicateurs utiles à la gestion de stocks jusqu'ici peu suivis, et peu encadrés.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00089/20048/18049.pdf
http://archimer.ifremer.fr/doc/00089/20048/

Éditeur(s) : HAL CCSD
Résumé : International audience
Trees can control their shape and resist gravity thanks to their ability to produce wood under tensile stress. This stress is known to be produced during the maturation of wood fibres but the mechanism of its generation remains unclear. This study focuses on the formation of the secondary wall in tension wood produced in artificially tilted poplar saplings. Thickness of secondary wall layer (SL) and gelatinous layer (GL) were measured from cambium to mature wood in several trees sampled at different times after tilting. Measurements on wood fibres produced before tilting show the progressive increase of secondary wall thickness during the growing season. After the tilting date, SL thickness decreased markedly from normal wood to tension wood while the total thickness increased compared to normal wood, with the development of a thick GL. However, even after GL formation, SL thickness continues to increase during the growing season. GL thickening was observed to be faster than SL thickening. The development of the unlignified GL is proposed to be a low cost, efficient strategy for a fast generation of tensile stress in broadleaved trees.
IAWA journal / International Association of Wood Anatomists.

hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277/document
https://hal.archives-ouvertes.fr/hal-01229277/file/AbediniClair-Iawa-TensionCellWallThickening_preprint_HAL.pdf
DOI : 10.1163/22941932-00000084

Éditeur(s) : Actes de Colloque: Avancées et nouvellles technologies en toxinologie, éditeurs: Julien BARBIER, Evelyne BENOIT, Pascale MARCHOT, César MATTEI, Denis SERVENT
Résumé : Over the past seven years, methods available for the detection of phycotoxins have been extensively reviewed in a number of international expert committees, such as the consultations organised by FAO/IOC/WHO and EFSA, as well as by individual scientists. These reviews have shown that the methods available have severe limitations for the use in official control, either due to their limited scope and detection capability or due to a lack of calibration standards, reference materials and validation efforts. The present review focuses on recent developments in the detection of phycotoxins in several areas of applied research. Not being able to exhaustively describe all recent developments, the review focussed on three areas of interest to the authors: (i) detection of ultra-trace amounts of toxins, (ii) metabolism of toxins and their localisation in biological tissues, and (iii) approaches to detect unknown toxins or analogues of known toxins. Miniaturisation in combination with physico-chemical techniques appears to be a very efficient approach to detect low trace amounts of individual toxin analogues. In particular, the detection of azaspiracids and okadaic acid and analogues, using micro-filtration and on-line pre-concentration techniques, has shown to be useful for the characterisation of various algal and shellfish species. In the area of interactions of toxins with shellfish and mammalian systems, it is noted that several studies on biomarkers reveal either protein biomarkers of exposure to toxins or potential pathways of metabolism of the toxins themselves. A particular focus is given to recent findings in the areas of brevetoxin metabolism and biomarkers as well as azaspiracid localisation and metabolism. Finally, the detection of novel compounds is a particularly challenging area. The interest in this area has risen over the past years following cases of unexplained mouse toxicity such as the UK cockle toxicity and the French atypical toxicity in mussels and oysters from the Atlantic and Mediterranean coasts. Some attention is given to immuno-, functional and cellular bio-assays for the identification of bioactive agents in shellfish.
Durant les sept dernières années, les méthodes disponibles pour la détection des phycotoxines ont été abondamment revues dans de nombreux groupes internationaux d’expertises, tels que les consultations organisées par FAO/IOC/WHO et EFSA ainsi que dans de nombreux articles scientifiques de synthèse. Ces revues ont démontré que, vis-à-vis des systèmes de régulations officiels, les méthodes disponibles présentent des limites d’utilisation importantes. Soit elles ont un périmètre réduit et des limites de détection trop élevées, soit il y a un manque d’étalons, de matériaux de référence ou d’efforts de validation. La présente revue focalise sur les développements récents dans la détection de phycotoxines en recherche appliquée. Sans vouloir décrire de manière exhaustive tous les développements récents, la revue examine trois domaines d’intérêt pour les auteurs : (i) la détection de quantités ultra-traces de toxines, (ii) la métabolisation et la localisation des toxines dans des tissus biologiques, et (iii) les approches pour la détection de toxines non-répertoriées ou des analogues de toxines connues. La miniaturisation en combinaison avec les techniques physico-chimiques constitue apparemment une approche efficace pour la détection de faibles traces d’analogues individuels des toxines. En particulier, la micro-filtration et des techniques de pré-concentration en ligne se sont montrées utiles pour la détection des azaspiracides et des toxines du groupe de l’acide okadaïque dans la caractérisation de diverses espèces d’algues et de coquillages. Dans le domaine des interactions des toxines avec les coquillages et des systèmes vivants de mammifères, nous avons noté que plusieurs études sur les bio-marqueurs révèlent soit des marqueurs protéiniques d’exposition aux toxines, soit des marqueurs du métabolisme des toxines elles-mêmes. Un intérêt spécifique a été trouvé dans les résultats d’étude sur le métabolisme des brévétoxines et des azaspiracides. La détection des composés bioactifs non-répertoriés constitue un défi particulièrement difficile. Ce domaine a trouvé plus d’intérêt dû à plusieurs cas de toxicités inexpliquées dans le test souris telles que les toxicités observées dans les coques en provenance de Grande-Bretagne ou encore dans les moules et huîtres des côtes méditerranéennes et atlantiques françaises. Une attention particulière a été consacrée à l’identification d’agents bioactifs par les essais cellulaires ou fonctionnels ou basés sur la détection immuno-chimique.

Droits : 2010 SFET
http://archimer.ifremer.fr/doc/00019/12975/9949.pdf
http://archimer.ifremer.fr/doc/00019/12975/