Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
1. Despite considerable interest in the application of plant functional traits to questions of community assembly and ecosystem structure and function, there is no consensus on the appropriateness of sampling designs to obtain plot-level estimates in diverse plant communities. 2. We measured 10 plant functional traits describing leaf and stem morphology and ecophysiology for all trees in nine 1-ha plots in terra firme lowland tropical rain forests of French Guiana (N = 4709). 3.We calculated, by simulation, the mean and variance in trait values for each plot and each trait expected under seven sampling methods and a range of sampling intensities. Simulated sampling methods included a variety of spatial designs, as well as the application of existing data base values to all individuals of a given species. 4. For each trait in each plot, we defined a performance index for each sampling design as the proportion of resampling events that resulted in observed means within 5% of the true plot mean, and observed variance within 20%of the true plot variance. 5. The relative performance of sampling designs was consistent for estimations of means and variances. Data base use had consistently poor performance for most traits across all plots, whereas sampling one individual per species per plot resulted in relatively high performance. We found few differences among different spatial sampling strategies; however, for a given strategy, increased intensity of sampling resulted in markedly improved accuracy in estimates of trait mean and variance. 6. We also calculated the financial cost of each sampling design based on data from our 'every individual per plot' strategy and estimated the sampling and botanical effort required. The relative performance of designs was strongly positively correlated with relative financial cost, suggesting that sampling investment returns are relatively constant. 7. Our results suggest that trait sampling for many objectives in species-rich plant communities may require the considerable effort of sampling at least one individual of each species in each plot, and that investment in complete sampling, though great, may be worthwhile for at least some traits.
ISSN: 0269-8463

hal-00594009
https://hal.archives-ouvertes.fr/hal-00594009

Résumé : Les forêts tropicales contiennent dans leur biomasse aérienne un stock de carbone important à l’échelle de la planète. Mesurer ce stock et comprendre son fonctionnement permet de mieux saisir les enjeux liés à sa protection, sa destruction ou sa modification, ainsi que son rôle dans le cycle du carbone et les mécanismes climatiques globaux. Dans le cadre des problématiques économiques et écologiques liés au climat, les forêts sont progressivement prises en compte dans les programmes internationaux de mesures visant à réduire l’impact anthropique sur le climat (Protocole de Kyoto, 1998 ; Accord de Copenhague, 2009). L’intégration des forêts dans les mécanismes financiers liés au marché du carbone est clairement envisagée dans les années à venir (marché de carbone « d’origine forestière »).L’estimation de la biomasse aérienne d’une parcelle de forêt inventoriée nécessite l’utilisation successive de plusieurs modèles. Dans ces parcelles, le diamètre et l’espèce de chaque arbre sont renseignés. Ensuite, ces parcelles sont utilisées comme références pour l’extrapolation spatiale des valeurs de biomasse. Cette extrapolation repose souvent sur le traitement de signaux aériens (avions, satellites). Il est aussi possible d’utiliser covariables environnementales (climat, géologie, …).L’incertitude associée à l’estimation de la biomasse d’une région est le résultat de toutes les incertitudes associées à ces différents processus. Les connaissances actuelles ne nous permettent pas de quantifier cette incertitude. L’objectif de la thèse est de développer une méthodologie d’estimation de la biomasse qui permette la propagation des incertitudes ainsi que l’identification des sources de cette incertitude.Modèle de hauteur : Nous proposons un nouveau modèle de hauteur pour les forêts tropicales. Les paramètres de ce modèle ont un sens écologique et peuvent être prédits par des variables décrivant le peuplement sur lequel il est appliqué. Nous avons utilisé les données des projets Amalin et Bridge et sélectionné 42 parcelles réparties en Guyane dans lesquelles le diamètre et la hauteur de chaque arbre ont été mesurés.Modèle de densité de bois : Un modèle à été conçu pour associer à chaque espèce une distribution de densité de bois et non une valeur fixe. Nous avons utilisé les données du projet Bridge dans lequel la densité de bois a été mesurée sur 2504 arbres représentant 466 espèces.Modèle de biomasse: Nous avons montré par une analyse de sensibilité que les incertitudes des prédictions de hauteur et de densité de bois n’avaient qu’une part négligeable dans l’incertitude des prédictions de biomasse. L’amélioration de la précision de ces modèles n’est donc pas une priorité. En revanche, le modèle de hauteur peut être une source de biais.Modélisation spatiale : Les modèles développés ont été appliqués à différents réseaux de parcelles couvrant bien la zone littorale guyanaise : inventaires papetiers de l’ONF, réseau Guyafor, projet Amalin… Les prédictions de biomasse de ces parcelles sont utilisées dans un modèle spatiale. Nous produisons ainsi une carte de biomasse guyanaise associée à une carte de l’incertitude de cette estimation.
Tropical forest yield and important part of the aerial vegetation carbon stock on earth. Measuring and understanding this stock distribution is crucial for the management of the tropical forests facing the actual environmental challenges (REDD+, carbon market).Aerial Biomass estimation of forest census plots requires few models depending on the precision of the inventory: diameter models, height models, wood density models. Spatial extrapolation between census plots relies on aerial data (satellite measurements, images) or ground-based data (geology, altitude).The uncertainty of the estimation of a region’s biomass is the result of the uncertainty brought by all these models. The aim of the thesis is to develop models and methods to estimate the biomass of a region while propagating the uncertainties. This is applied to the neo-tropical forest of French Guiana (South America, Guianas Plateau).

http://www.theses.fr/2012AGUY0567/document

Éditeur(s) : HAL CCSD Cambridge University Press
Résumé : International audience
Genetic variation was examined in two complex cases of Indo-Pacific pygmy angelfishes (genus Centropyge; Pomacanthidae). The lemonpeel pygmy angelfish C. flavissima (Cuvier and Valenciennes) has a geographically disjunct Indian vs. Pacific distribution and the individuals from these two regions differ by their colour patterns. Previous research on C. flavissima has shown mitochondrial introgression from two related species, C. eibli in the eastern Indian Ocean and C. vrolikii in the Pacific Ocean. Using the 16S rDNA and the CO1 gene as phylogeographic markers, we found no mitochondrial haplotypes in common between Indian Ocean C. flavissima and C. eibli, confirming partial genetic isolation, albeit recent. Also, we found substantial genetic differences between Indian and Pacific C. flavissima populations at the nuclear ETS-2 intron locus. The Indian Ocean form of C. flavissima, thus geographically isolated by >2000 km distance from its Pacific Ocean counterpart, is described as a new species, Centropyge cocosensis sp. nov. Centropyge cocosensis sp. nov. differs in appearance from C. flavissima in having a conspicuous blue iris and a fainter, bluish eye ring. We also found that the yellow pygmy angelfish C. heraldi Woods and Schultz consists of two genetically distinct entities, one distributed widely in the northern tropical Indo-West Pacific, the other distributed in the southern Pacific Ocean. The name originally given to the blackfin pygmy angelfish, C. woodheadi Kuiter, is here resurrected to designate the latter.
EISSN: 1755-2672

hal-01340521
https://hal-univ-perp.archives-ouvertes.fr/hal-01340521
DOI : 10.1007/s12526-016-0509-y

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé :  
We present a plant trait database covering autecology for rain forest trees of French Guiana. The database comprises more than thirty traits including autecology (e.g., habitat associations and reproductive phenology), wood structure (e.g., density and tension characteristics) and physiology at the whole plant (e.g., carbon and nitrogen isotopes) and leaf level (e.g., specific leaf area, photosynthetic capacity). The current database describes traits for about nine hundred species from three hundred genera in one hundred families. For more than sixty species, data on twelve morphological and ecophysiological traits are provided for individual plants under different environmental conditions and at different ontogenetic stages. The database is thus unique in permitting intraspecific analyses, such as the effects of ontogenetic stages or environmental conditions on trait values and their relationships.
Annals of Forest Science

hal-01032196
https://hal.archives-ouvertes.fr/hal-01032196
DOI : 10.1051/forest:2007058

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé :  
1. Despite considerable interest in the application of plant functional traits to questions of community assembly and ecosystem structure and function, there is no consensus on the appropriateness of sampling designs to obtain plot-level estimates in diverse plant communities. 2. We measured 10 plant functional traits describing leaf and stem morphology and ecophysiology for all trees in nine 1-ha plots in terra firme lowland tropical rain forests of French Guiana (N = 4709). 3.We calculated, by simulation, the mean and variance in trait values for each plot and each trait expected under seven sampling methods and a range of sampling intensities. Simulated sampling methods included a variety of spatial designs, as well as the application of existing data base values to all individuals of a given species. 4. For each trait in each plot, we defined a performance index for each sampling design as the proportion of resampling events that resulted in observed means within 5% of the true plot mean, and observed variance within 20%of the true plot variance. 5. The relative performance of sampling designs was consistent for estimations of means and variances. Data base use had consistently poor performance for most traits across all plots, whereas sampling one individual per species per plot resulted in relatively high performance. We found few differences among different spatial sampling strategies; however, for a given strategy, increased intensity of sampling resulted in markedly improved accuracy in estimates of trait mean and variance. 6. We also calculated the financial cost of each sampling design based on data from our 'every individual per plot' strategy and estimated the sampling and botanical effort required. The relative performance of designs was strongly positively correlated with relative financial cost, suggesting that sampling investment returns are relatively constant. 7. Our results suggest that trait sampling for many objectives in species-rich plant communities may require the considerable effort of sampling at least one individual of each species in each plot, and that investment in complete sampling, though great, may be worthwhile for at least some traits.
Functional Ecology

hal-01032175
https://hal.archives-ouvertes.fr/hal-01032175
DOI : 10.1111/j.1365-2435.2009.01600.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : Guadua sarcocarpa and Guadua weberbaueri (Poaceae: Bambuseae) have a negative influence on tree regeneration and recruitment in bamboo-dominated forests of southwestern Amazonia. The lack of advanced regeneration and sparse canopy in this forest type present a considerable challenge for developing sustainable timber management plans. We conducted field studies in the Porto Dias Agroextractive Settlement Project in Acre, Brazil to assess influences of logging in bamboo-dominated forest sites. Taxonomic composition, stand structure, aboveground biomass, commercial timber volume, and commercial tree seedling and bamboo culm density were compared between five logged vs. unlogged sites in different landholdings, using modified 0.5 ha Gentry plots. No differences in taxonomic composition, aboveground biomass, adult and juvenile stem density, or woody seedling and bamboo culm density were detected between paired logged and unlogged sites. Commercial timber volume, however, was reduced by almost two-thirds in logged plots, suggesting that long-term timber management goals in this forest type are compromised since so few future crop trees remained onsite. Our findings indicate that in order to maximize local management objectives, community forest managers must approach logging in bamboo-dominated forests with caution. We suggest an integration of non-timber forest product extraction with low harvest intensity and low-impact logging, tending of natural regeneration, and diversification of commercial species.
ISSN: 0378-1127

hal-01204213
https://hal.archives-ouvertes.fr/hal-01204213
DOI : 10.1016/j.foreco.2013.12.022
PRODINRA : 263103

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy B - Oxford Open Option A
Résumé :  
absent
Journal of Experimental Botany

hal-01032195
https://hal.archives-ouvertes.fr/hal-01032195
DOI : 10.1093/jxb/erp276

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Archaea may be involved in global energy cycles, and are known for their ability to interact with eukaryotic species (sponges, corals and ascidians) or as archaeal-bacterial consortia. The recently proposed phylum Thaumarchaeota may represent the deepest branching lineage in the archaeal phylogeny emerging before the divergence between Euryarchaeota and Crenarchaeota. Here we report the first characterization of two marine thaumarchaeal species from shallow waters that consist of multiple giant cells. One species is coated with sulfur-oxidizing g-Proteobacteria. These new uncultured thaumarchaeal species are able to live in the sulfide-rich environments of a tropical mangrove swamp, either on living tissues such as roots or on various kinds of materials such as stones, sunken woods, etc. These archaea and archaea/bacteria associations have been studied using light microscopy, transmission electron microscopy and scanning electron microscopy. Species identification of archaeons and the putative bacterial symbiont have been assessed by 16S small subunit ribosomal RNA analysis. The sulfur-oxidizing ability of the bacteria has been assessed by genetic investigation on alpha-subunit of the adenosine-5_- phosphosulfate reductase/oxidase's (AprA). Species identifications have been confirmed by fluorescence in situ hybridization using specific probes designed in this study. In this article, we describe two new giant archaeal species that form the biggest archaeal filaments ever observed. One of these species is covered by a specific biofilm of sulfur-oxidizing g-Proteobacteria. This study highlights an unexpected morphological and genetic diversity of the phylum Thaumarchaeota.
ISSN: 1462-2912

hal-00715219
https://hal.univ-antilles.fr/hal-00715219
DOI : 10.1111/j.1462-2920.2010.02309.x

Éditeur(s) : HAL CCSD
Résumé : One of the major challenges in forest ecology is to understand the ecology, physiology and potential responses of the> 250000 species of vascular plants of the planet through the categorization of this diversity into functional groups. This approach is essentially based on functional traits analysis, but few investigations were made in tropical areas. The aim of this study was to determine functional groups in two contrasted tropical ecosystems, dry (DF) and mountain rain (MRF) forest (respectively rainfall of 1 200 mm/year and 10 000 mm/year). Guadeloupe Island in FWI presents both these ecosystems spread over less 100 km. In a first time, we developed an original species typology based on 7 "soft" traits, easy to measure (stomatal density, leaf trichom density, chlorophyll content, leaf nitrogen content, specific leaf area, wood density, leaf area, plant height). The method was based on principal component analysis (PCA) and agglomerative hierarchical clustering (AHC) applied to these traits measured at the individual level (Blazy et al., 2009). In a second time, we evaluated the relevance of these soft trait-based groups compared to a typology based on 5 "hard" ecophysiological traits, more costly to quantify but with higher functional significance (difference between predawn and minimum leaf water potential, stomatal conductance, maximal carbon assimilation rate, leaf water potential at 90% of loss of stem hydraulic conductivity). When performed on the dominant canopy species in DF and MRF (a total of 13 species and 60 mature individuals), the typological approach based on soft traits seems relevant to discriminate groups with a distinct functional reality. Through both ecosystems, we obtained 4 homogenous groups. Two were exclusively composed by DF's or MRF's species, indicating that a functional strategy can be linked to specific environmental conditions. The two other groups showed a mix of DF and MRF species indicating that different functional strategies can coexist in the same environment. These mixed groups seem distinct by their ecophysiological features, particularly in term of hydraulic characteristics. One group was composed by drought tolerant species, water spender species, with a high xylem embolism resistance, whereas the second one was composed by water saver species, less resistant to embolism. Therefore, a determination of functional groups based on soft traits could be useful to model ecosystem's responses to environmental changes on a global scale.
Book of Abstracts - isem 2013 - Ecological Modelling for Ecosystem Sustainability
Toulouse, France

hal-00964668
https://hal.archives-ouvertes.fr/hal-00964668

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. We used data for >34 000 trees from several permanent plots in French Guiana to investigate if soil characteristics could predict the structure (tree diameter, density and aboveground biomass), and dynamics (growth, mortality, aboveground wood productivity) of nutrient-poor tropical forests. Most variables did not covary with site-level changes in soil nutrient content, indicating that nutrient-cycling mechanisms other than the direct absorption from soil (e.g. the nutrient uptake from litter, the resorption, or the storage of nutrients in the biomass), may strongly control forest structure and dynamics. Ecosystem-level adaptations to low soil nutrient availability and long-term low levels of disturbance may help to account for the lower productivity and higher accumulation of biomass in nutrient-poor forests compared to nutrient-richer forests.
ISSN: 2045-2322

hal-01606170
https://hal.archives-ouvertes.fr/hal-01606170
DOI : 10.1038/srep45017
PRODINRA : 389876

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Functional traits provide insight into a variety of ecological questions, yet the optimal sampling method to estimate the community-level distribution of plant functional trait values remains a subject of debate, especially in species-rich forests. 2. We present a simulation analysis of the trait distribution of a set of nine completely sampled permanent plots in the lowland rain forests of French Guiana. 3. Increased sampling intensity consistently improved accuracy in estimating community-weighted means and variances of functional trait values, whereas there was substantial variation among functional traits and minor differences among sampling strategies. 4. Thus, investment in intensified sampling yields a greater improvement in the accuracy of estimation than does an equivalent investment in sampling design complication. 5. Notably, 'taxon-free' strategies frequently had greater accuracy than did abundance-based strategies, which had the additional cost of requiring botanical surveys. 6. We conclude that there is no substitute for extensive field sampling to accurately characterize the distribution of functional trait values in species-rich forests.
ISSN: 0269-8463

hal-01536541
https://hal.archives-ouvertes.fr/hal-01536541
PRODINRA : 343202
DOI : 10.1111/1365-2435.12433

Éditeur(s) : HAL CCSD Montpellier : CIRAD
Résumé : This article presents the effects of logging on the dynamics of above-ground biomass from the results of the post-logging study within two forests: Cikel in Eastern Para, Brazil and Paracou in French Guiana. The main objective is to compare the impact of commercial logging on the regeneration of the above-ground biomass in these forests whose characteristics differ in terms of structure and growth. In both sites, the intensity of exploitation is a key factor in determining the loss of biomass and the time required for its regeneration. In Paracou, the regeneration of biomass lost during conventional logging of 10 trees per hectare takes 45 years and more than 100 years when operating with higher intensity (21 trees/ha). In Cikei the forest biomass regenerates after 49 years harvesting 6 trees/ha and that takes 87 years after removal of 8 trees/ha. This regeneration needs similar time on both sites but with lower logging intensity at Cikel, in which felled trees are larger with a greater biomass than those of Paracou. This post-logging study has established a direct correlation of the dynamics of the biomass with the initial structure of the forest, as well as with the parameters of forest dynamics: mortality, growth and recruitment. The accumulation of biomass by the tree growth of the two remaining stands is a key parameter for the net carbon storage, while the contribution of recruitment in Paracou becomes significant only after 10 years after felling. Therefore in view to improve the growth of residual trees, it is compulsory to apply adequate silvicultural treatments such as selective thinning or removal of vines. While the two forests are geographically close enough, their regenerative abilities differ and because of the significant difference in size of the trees, the forest could tolerate more intensive harvesting in French Guiana
ISSN: 0006-579X

hal-01032427
https://hal.archives-ouvertes.fr/hal-01032427

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
ISSN: 0022-0957

hal-01080844
https://hal-agroparistech.archives-ouvertes.fr/hal-01080844
DOI : 10.1093/jxb/erm268