Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The exchanges of carbon, water and energy between the atmosphere and the Amazon basin have global implications for the current and future climate. Here, the global atmospheric inversion system of the Monitoring of Atmospheric Composition and Climate (MACC) service is used to study the seasonal and interannual variations of biogenic CO 2 fluxes in Amazonia during the period 2002–2010. The system assimilated surface measurements of atmospheric CO 2 mole fractions made at more than 100 sites over the globe into an atmospheric transport model. The present study adds measurements from four surface stations located in tropical South America, a region poorly covered by CO 2 observations. The estimates of net ecosystem exchange (NEE) optimized by the inversion are compared to an independent estimate of NEE upscaled from eddy-covariance flux measurements in Amazonia. They are also qualitatively evaluated against reports on the seasonal and interannual variations of the land sink in South America from the scientific literature. We attempt at assessing the impact on NEE of the strong droughts in 2005 and 2010 (due to severe and longer-than-usual dry seasons) and the extreme rainfall conditions registered in 2009. The spatial variations of the seasonal and in-terannual variability of optimized NEE are also investigated. While the inversion supports the assumption of strong spatial heterogeneity of these variations, the results reveal critical limitations of the coarse-resolution transport model, the surface observation network in South America during the recent years and the present knowledge of modelling uncertainties in South America that prevent our inversion from capturing the seasonal patterns of fluxes across Amazonia. However, some patterns from the inversion seem consistent with the anomaly of moisture conditions in 2009.
ISSN: 1680-7316

hal-01557375
https://hal.univ-lorraine.fr/hal-01557375
https://hal.univ-lorraine.fr/hal-01557375/document
https://hal.univ-lorraine.fr/hal-01557375/file/acp-15-8423-2015.pdf
DOI : 10.5194/acp-15-8423-2015-supplement

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
With global climate change altering marine ecosystems, research on plankton ecology is likely to navigate uncharted seas. Yet, a staggering wealth of new plankton observations, integrated with recent advances in marine ecosystem modelling, may shed light on marine ecosystem structure and functioning. A EuroMarine foresight workshop on the “Impact of climate change on the distribution of plankton functional and phylogenetic diversity” (PlankDiv) identified five grand challenges for future plankton diversity and macroecology research: 1) What can we learn about plankton communities from the new wealth of high-throughput ‘omics’ data? 2) What is the link between plankton diversity and ecosystem function? 3) How can species distribution models be adapted to represent plankton biogeography? 4) How will plankton biogeography be altered due to anthropogenic climate change? and 5) Can a new unifying theory of macroecology be developed based on plankton ecology studies? In this review, we discuss potential future avenues to address these questions, and challenges that need to be tackled along the way.
ISSN: 2296-7745

hal-01545318
https://hal.archives-ouvertes.fr/hal-01545318
DOI : 10.3389/fmars.2017.00068

Éditeur(s) : HAL CCSD Wiley
Résumé : The intensification of the hydrological cycle, with an observed and modeled increase in drought incidence and severity, underscores the need to quantify drought effects on carbon cycling and the terrestrial sink. FLUXNET, a global network of eddy covariance towers, provides dense data streams of meteorological data, and through flux partitioning and gap filling algorithms, estimates of net ecosystem productivity (FNEP), gross ecosystem productivity (P), and ecosystem respiration (R). We analyzed the functional relationship of these three carbon fluxes relative to evaporative fraction (EF), an index of drought and site water status, using monthly data records from 238 micrometeorological tower sites distributed globally across 11 biomes. The analysis was based on relative anomalies of both EF and carbon fluxes and focused on drought episodes by biome and climatic season. Globally P was ≈50% more sensitive to a drought event than R. Network-wide drought-induced decreases in carbon flux averaged −16.6 and −9.3 g C m−2 month−1 for P and R, i.e., drought events induced a net decline in the terrestrial sink. However, in evergreen forests and wetlands drought was coincident with an increase in P or R during parts of the growing season. The most robust relationships between carbon flux and EF occurred during climatic spring for FNEP and in climatic summer for P and R. Upscaling flux sensitivities to a global map showed that spatial patterns for all three carbon fluxes were linked to the distribution of croplands. Agricultural areas exhibited the highest sensitivity whereas the tropical region had minimal sensitivity to drought. Combining gridded flux sensitivities with their uncertainties and the spatial grid of FLUXNET revealed that a more robust quantification of carbon flux response to drought requires additional towers in all biomes of Africa and Asia as well as in the cropland, shrubland, savannah, and wetland biomes globally.
ISSN: 1354-1013

hal-01032076
https://hal.archives-ouvertes.fr/hal-01032076
DOI : 10.1111/j.1365-2486.2009.01991.x

Éditeur(s) : HAL CCSD
Résumé : International audience
ABSTRACT :A satellite retrieval of surface solar irradiance (SSI) based on GOES satellite data is presented and validated for the French Guiana with three years of in situ measurements from six ground stations. We propose a particle filter approach combining GOES satellite observations and in situ data. We propose an original observation function based on a joint probability distribution and taking advantages of the characteristics of both the involved type of data. The statistical results are compared with those of existing estimation methods and they are found to be in accordance with them. The daily bias ranges from -12 W/m² (-6% of the mean of measurements) to 12 W/m² (6%), depending on the stations. The daily root mean square difference ranges between 23 W/m² (10%) and 27 W/m² (15%). The correlation coefficient is close to 0.92. There is no seasonal climatic effect on the method, the bias and RMSD remain similar for both the rainy and the dry season, but better correlation is observed in the rainy season than in the dry season. Uncertainties are mainly due to the presence of specific tropical atmospheric conditions during the dry season. The method has been tested through various tests: cross-validation scheme has highlighted the potential generalization of the model in a temporal dimension; the ability of the method to effectively duplicate anomalies in surface solar irradiance time series has also been tested. The robustness of the results shows the interest of the method compared to other existing estimation methods. Because of its simplicity of implementation this method opens new prospects in estimating surface solar irradiance. It is concluded that using a particle filter and original observation function method allow a high-quality surface solar irradiance estimation in French Guiana.RESUMEUne méthode d'estimation de l'irradiance solaire de surface (SSI) à partir de données satellites GOES est présentée et validée par comparaison avec trois années de mesures in situ provenant de six stations météorologiques de Guyane Française. Dans cet article, nous proposons une approche par filtre particulaire combinant observations du satellite GOES et données in situ. Nous proposons une fonction d'observation originale basée sur une distribution de probabilité conjointe des deux types de données. Les résultats statistiques sont conformes à ceux des méthodes existantes. Le biais journalier varie de -16 W / m² (-7% de la moyenne des mesures) à 12 W / m² (6%). L'erreur quadratique moyenne (RMSD) est comprise entre 23 W / m² (10%) et 27 W / m² (15%). Le coefficient de corrélation est de 0,92. La méthode est peu sensible aux variations climatiques saisonnières, le biais et RMSD restent similaires en saison des pluies comme en saison sèche, mais une meilleure corrélation est observée pendant la saison des pluies. Les incertitudes sont principalement dues à la présence de conditions atmosphériques tropicales spécifiques en saison sèche. La méthode a été soumise à différents tests : un processus de validation croisée a mis en évidence la possible généralisation du modèle dans une dimension temporelle, la capacité du modèle à reproduire efficacement des anomalies dans les séries temporelles d'irradiance solaire de surface a aussi été testée. La robustesse des résultats obtenus montrent l'intérêt du modèle par rapport aux autres méthodes d'estimation existantes. A cause de sa simplicité de mise en oeuvre cette méthode ouvre de nouvelles perspectives en matière d'estimation de l'irradiance solaire au sol. Nous concluons que l'utilisation d'un filtre particulaire combinée à une fonction d'observation originale permet une estimation de haute qualité de l'irradiance solaire au sol en Guyane Française.
Canadian Journal of Remote Sensing

meteo-01304574
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304574
DOI : 10.1080/07038992.2015.1040150

Éditeur(s) : HAL CCSD Wiley
Résumé :
How Quaternary climatic and geological disturbances influenced the composition of Neotropical forests is hotly debated. Rain fall and temperature changes during and/or immediately after the Last Glacial Maximum (LGM) are thought to have strongly affected the geographical distribution and local abundance of tree species. The paucity of the fossil records in Neotropical forests prevents a direct reconstruction of such processes. To describe community-level historical trends in forest composition, we turned therefore to inferential methods based on the reconstruction of past demographic changes. In particular, we modelled the history of rainforests in the Eastern Guiana Shield over a time scale of several thousand generations, through the application of Approximate Bayesian Computation (ABC) and Maximum Likelihood (ML) methods to diversity data at nuclear and chloroplast loci in eight species or subspecies of rainforest trees. Depending on the species and on the method applied, we detected population contraction, expansion or stability, with a general trend in favour of stability or expansion, with changes presumably having occurred during or after the LGM. These findings suggest that Guiana Shield rain forests have globally persisted, while expanding, through the Quaternary, but that different species have experienced different demographic events, with a trend towards the increase in frequency of light-demanding, disturbance-associated species.
ISSN: 0962-1083

hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150/document
https://hal.archives-ouvertes.fr/hal-01512150/file/Barthe_et_al-_%7B0B6A8C5E-DDFF-4C4E-822C-4E7BC22A6C9B%7D.pdf
DOI : 10.1111/mec.13949

Éditeur(s) : HAL CCSD Wiley
Résumé : Proper estimates of decomposition are essential for tropical forests, given their key role in the global carbon (C) cycle. However, the current paradigm for litter decomposition is insufficient to account for recent observations and may limit model predictions for highly diverse tropical ecosystems. In light of recent findings from a nutrient-poor Amazonian rainforest, we revisit the commonly held views that: litter traits are a mere legacy of live leaf traits; nitrogen (N) and lignin are the key litter traits controlling decomposition; and favourable climatic conditions result in rapid decomposition in tropical forests. Substantial interspecific variation in litter phosphorus (P) was found to be unrelated to variation in green leaves. Litter nutrients explained no variation in decomposition, which instead was controlled primarily by nonlignin litter C compounds at low concentrations with important soil fauna effects. Despite near-optimal climatic conditions, tropical litter decomposition proceeded more slowly than in a climatically less favourable temperate forest. We suggest that slow decomposition in the studied rainforest results from a syndrome of poor litter C quality beyond a simple lignin control, enforcing energy starvation of decomposers. We hypothesize that the litter trait syndrome in nutrient-poor tropical rainforests may have evolved to increase plant access to limiting nutrients via mycorrhizal associations.
ISSN: 0028-646X

hal-01032400
https://hal.archives-ouvertes.fr/hal-01032400
DOI : 10.1111/j.1469-8137.2010.03483.x

Éditeur(s) : Elsevier
Résumé : Overexploitation of marine resources remains a problem worldwide. Many works advocate for the use of marine reserves as a central element of future stock management in a sustainable perspective. In the present paper, we address the influence of protected areas upon fisheries sustainability within an eco-systemic framework through a dynamic bio-economic model integrating a trophic web, catches and environmental uncertainties. The model is spatially implicit. The evaluation of the ecosystem is designed through the respect along time of constraints of both conservation and guaranteed captures. Using the mathematical concept of invariance kernel in a stochastic context, we define different MPA effects according to biodiversity catches or mixed points of view. Numerical simulations inspired from data of Abore coral reef reserve in New Caledonia illustrate the main concepts. In this case, it is pointed out how MPA conservation effect is not necessarily conflicting with MPA catches effect. it is shown that such a co-viability requires medium exploitation rate. Moreover, the climatic changes represented by rise in cyclonic events seem to reinforce these assertions. (C) 2007 Elsevier B.V. All rights reserved.
Ecological Modelling (0304-3800) (Elsevier), 2007-11 , Vol. 208 , N. 2-4 , P. 353-366

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3510.pdf
DOI:10.1016/j.ecolmodel.2007.06.018
http://archimer.ifremer.fr/doc/00000/3510/

Éditeur(s) : HAL CCSD Wiley
Résumé : The evolutionary potential of long-lived species, such as forest trees, is fundamental for their local persistence under climate change (CC). Genome–environment association (GEA) analyses reveal if species in heterogeneous environments at the regional scale are under differential selection resulting in populations with potential preadaptation to CC within this area. In 79 natural [i]Fagus sylvatica[/i] populations, neutral genetic patterns were characterized using 12 simple sequence repeat (SSR) markers, and genomic variation (144 single nucleotide polymorphisms (SNPs) out of 52 candidate genes) was related to 87 environmental predictors in the latent factor mixed model, logistic regressions and isolation by distance/environmental (IBD/IBE) tests. SSR diversity revealed relatedness at up to 150m intertree distance but an absence of large-scale spatial genetic structure and IBE. In the GEA analyses, 16 SNPs in 10 genes responded to one or several environmental predictors and IBE, corrected for IBD, was confirmed. The GEA often reflected the proposed gene functions, including indications for adaptation to water availability and temperature. Genomic divergence and the lack of large-scale neutral genetic patterns suggest that gene flow allows the spread of advantageous alleles in adaptive genes. Thereby, adaptation processes are likely to take place in species occurring in heterogeneous environments, which might reduce their regional extinction risk under CC
ISSN: 0028-646X

hal-01309135
https://hal.archives-ouvertes.fr/hal-01309135
PRODINRA : 343710
DOI : 10.1111/nph.13809

Éditeur(s) : Université Paul Sabatier, Toulouse III
Résumé : The marine phytoplankton in the ocean represents only less than 1% of global biomass. Phytoplankton performs half of all photosynthesis. This autotrophic biomass in ocean is then an essential element in the climate regulation through processes as carbon dioxide absorption during the photosynthesis. Therefore, we need to estimate precisely this biomass as well as the processes which affect it. Using remotely sensed data (altimetry and ocean colour) and a coupled physical/biogeochemical model (MERCATOR-OPA/NPZDDON), Rossby waves and their influence on phytoplankton biomass are specifically studied in the North Atlantic Ocean. Their features and their influences on surface chlorophyll concentrations were analysed. Through the different mechanisms identified, we estimated that these waves can induce local increases from 60% to 150% of the estimated primary production.
Même si l'océan ne représente que moins de 1% de la biomasse liée aux plantes sur la terre, il est responsable de près de la moitié de la photosynthèse nette de la biosphère. Cette biomasse est par conséquent un élément essentiel dans la régulation du climat à travers par exemple le cycle océanique du carbone. Il est donc nécessaire d'estimer correctement cette biomasse ainsi que les processus qui l'affectent. A l'aide de données satellites altimétriques et couleur de l'eau et d'un modèle couplé physique/biogéochimie (MERCATOR-OPA / NPZDDON), les ondes de Rossby et leur influence sur cette biomasse sont spécifiquement étudiées dans l'océan Atlantique Nord. Leurs propriétés et leur influence sur les concentrations en chlorophylle de surface sont analysées. Au travers des mécanismes mis en jeu identifiés, nous estimons que ces ondes peuvent entraîner une augmentation locale comprise entre 60% et 150% de la production primaire estimée.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2454.pdf
http://archimer.ifremer.fr/doc/00000/2454/

Éditeur(s) : Elsevier
Résumé : A previously unknown pattern of multiple bottom-simulating reflections (BSRs) occurs on high-resolution reflection seismic data in the Danube deep-sea fan, associated with acoustic features indicating free gas. Our study provides evidence that this pattern is developed in relation with the architecture of distinct channel-levee systems of the Danube fan. Channel-levee systems hosting multiple BSRs act as relatively sealed gas-bearing systems whose top is situated above the base of the gas hydrate stability zone (BGHSZ). Inside these systems, free gas accumulates below the BGHSZ under a combined lithological, structural and stratigraphical control. The uppermost BSR marks the current equilibrium BGHSZ, for a gas composition of more than 99% methane. Model-derived depths of the BGHSZ for different gas compositions and pressure-temperature conditions show that multiple BSRs would correspond to the BGHSZ either for (1) layers of gas hydrates with high contents of heavy hydrocarbons or hydrogen sulphide, or (2) stable climatic episodes with temperatures between glacial values and the present-day conditions. As the gas hydrate compositions required by hypothesis (I) are in sharp contradiction with the general background of the gas composition in the study area, we suggest that multiple BSRs are most probably relics of former positions of the BGHSZ, corresponding to successive steps of climate warming. In this case, they can provide sea-bottom paleotemperature values for these episodes, and hence they are potential new proxies for deciphering past climate conditions.
Marine Geology (0025-3227) (Elsevier), 2006-03 , Vol. 227 , N. 3-4 , P. 163-176

Droits : 2006 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2006/publication-1210.pdf
DOI:10.1016/j.margeo.2005.12.006
http://archimer.ifremer.fr/doc/00000/1210/

Éditeur(s) : HAL CCSD
Résumé : International audience
Sciences curriculum, official instructions and scholar books are the same for all French pupils. Some official scientific aims of secondary schools (11–18 years old) like seasons and moon observation may not fit with nature observation in French West Indies. To overcome this obstacle and improve sciences education in French West Indies, a better understanding of representation of students seems necessary. A questionnaire was fulfilled by 124 first year students from Guadeloupe. European seasons descriptions are significantly more precise than Caribbean ones in year period as in climatic characteristics (temperature and humidity). More than 75% of answers do not take in account the relationship between moon orientation and latitude. The majority of students seem to perceive the moon as represented in the models of education or cultural product from temperate areas and not as they see it. Here we seem to face a kind of inverted obstacle in the epistemological sense. It is not the naive observation of nature that makes it more difficult to understand scientific concepts but universal selection of content (examples, models, order of ideas) that explains science taught imperfectly observable in specific educational setting.
ESERA 2011 Science Learning and Citizenship
Lyon, France

Droits : info:eu-repo/semantics/OpenAccess
hal-01539485
https://hal.univ-antilles.fr/hal-01539485
https://hal.univ-antilles.fr/hal-01539485/document
https://hal.univ-antilles.fr/hal-01539485/file/ESERA2011.pdf

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
UNLABELLED: ABSTRACT: BACKGROUND: Malaria is a major health issue in French Guiana. Amerindian communities remain the most affected. A previous study in Camopi highlighted the predominant role of environmental factors in the occurrence of malaria. However, all parameters involved in the transmission were not clearly identified. A new survey was conducted in order to clarify the risk factors for the presence of malaria cases in Camopi. METHODS: An open cohort of children under seven years of age was set up on the basis of biologically confirmed malaria cases for the period 2001-2009. Epidemiological and observational environmental data were collected using two structured questionnaires. Data were analysed with a multiple failures multivariate Cox model. The influence of climate and the river level on malaria incidence was evaluated by time-series analysis. Relationships between Anopheles darlingi human biting rates and malaria incidence rates were estimated using Spearman's rank correlation. RESULTS: The global annual incidence over the nine-year period was 238 per 1,000 for Plasmodium falciparum, 514 per 1,000 for Plasmodium visa and 21 per 1,000 for mixed infections. The multivariate survival analysis associated higher malaria incidence with living on the Camopi riverside vs. the Oyapock riverside, far from the centre of the Camopi hamlet, in a home with numerous occupants and going to sleep late. On the contrary, living in a house cleared of all vegetation within 50 m and at high distance of the forest were associated with a lower risk. Meteorological and hydrological characteristics appeared to be correlated with malaria incidence with different lags. Anopheles darlingi human biting rate was also positively correlated to incident malaria in children one month later. CONCLUSIONS: Malaria incidence in children remains high in young children despite the appearance of immunity in children around three years of age. The closeness environment but also the meteorological parameters play an important role in malaria transmission among children under seven years of age in Camopi.
ISSN: 1475-2875

inserm-00633771
http://www.hal.inserm.fr/inserm-00633771
http://www.hal.inserm.fr/inserm-00633771/document
http://www.hal.inserm.fr/inserm-00633771/file/1475-2875-10-246.pdf
DOI : 10.1186/1475-2875-10-246

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The modern high topography of the Tianshan resulted from the reactivation of a Paleozoic orogenic belt by the India/Asia collision. Today, the range exhibits tectonically active forelands and intermontane basins. Based on quantitative morphotectonic observations and age constraints derived from cosmogenic 10Be dating, single-grain post-infrared infrared stimulated luminescence (p-IR IRSL) dating and modeling of fault scarp degradation, we quantify the deformation in the Nalati and Bayanbulak intermontane basins in the central Eastern Tianshan. Our results indicate that at least 1.4 mm/yr of horizontal crustal shortening is accommodated within these two basins. This shortening represents over 15% of the 8.5 ± 0.5 mm/yr total shortening rate across the entire range at this longitude. This shortening rate implies that the Eastern Central Tianshan is thickening at a mean rate of ∼1.4 mm/yr, a rate that is significantly higher than the average denudation rate of 0.14 mm/yr derived from our cosmogenic analysis. This discrepancy suggests that the Tianshan range has not yet reached a steady-state topography and remains in a transient state of topographic growth, most likely due to limited denudation rates driven by the arid climate of Central Asia.
ISSN: 0012-821X

insu-01610154
https://hal-insu.archives-ouvertes.fr/insu-01610154
DOI : 10.1016/j.epsl.2017.09.025

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : 9 pages
International audience
Potentially hazardous asteroids and comets have hit Earth throughout its history, with catastrophic consequences in the case of the Chicxulub impact. Here we reexamine one of the mechanisms that allow an impact to have a global effect—the release of climate-active gases from sedimentary rocks. We use the SOVA hydrocode and model ejected materials for a sufficient time after impact to quantify the volume of gases that reach high enough altitudes (> 25 km) to have global consequences. We vary impact angle, sediment thickness and porosity, water depth, and shock pressure for devolatilization and present the results in a dimensionless form so that the released gases can be estimated for any impact into a sedimentary target. Using new constraints on the Chicxulub impact angle and target composition, we estimate that 325 ± 130 Gt of sulfur and 425 ± 160 Gt CO2 were ejected and produced severe changes to the global climate.
ISSN: 0094-8276

hal-01639659
https://hal.archives-ouvertes.fr/hal-01639659
DOI : 10.1002/2017GL074879

Éditeur(s) : HAL CCSD Wiley
Résumé :  
A digital land cover map of South America has been produced using remotely sensed satellite data acquired between 1995 and the year 2000. The mapping scale is defined by the 1 km spatial resolution of the map grid-cell. In order to realize the product, different sources of satellite data were used, each source providing either a particular parameter of land cover characteristic required by the legend, or mapping a particular land cover class. The map legend is designed both to fit requirements for regional climate modelling and for studies on land cover change. The legend is also compatible with a wider, global, land cover mapping exercise, which seeks to characterize the world's land surface for the year 2000. As a first step, the humid forest domain has been validated using a sample of high-resolution satellite images. The map demonstrates both the major incursions of agriculture into the remaining forest domains and the extensive areas of agriculture, which now dominate South America's grasslands.
ISSN: 1354-1013

hal-01032088
https://hal.archives-ouvertes.fr/hal-01032088
DOI : 10.1111/j.1529-8817.2003.00774.x

Éditeur(s) : Elsevier Science Bv
Résumé : On the Mediterranean continental shelves the post-glacial transgressive succession is a complex picture composed by seaward progradations, related to sea level stillstands and/or increased sediment supply to the coasts, and minor flooding surfaces, associated to phases of enhanced rates of sea level rise. Among Late Pleistocene examples, major mid-shelf progradations have been related to the short-term climatic reversal of the Younger Dryas event, a period during which the combination of increased sediment supply from rivers and reduced rates of sea level rise promoted the formation of progradations up to tens-meter thick. While the documentation of coastal and subaqueous progradations recording the Younger Dryas interval are widely reported in the literature, the model of compound progradation within transgressive deposits is not proposed so far. Here we present the documentation of a deltaic system where both delta front sands and related fine-grained subaqueous progradations (prodeltaic to shallow marine) have been preserved. The Paleo Gargano Compound Delta (PGCD) formed offshore the modern Gargano Promontory (southern Adriatic Sea), and is composed by a coastal coarse-grained delta of reduced thickness and a muddy subaqueous clinoform, up to 30 meters thick. The PGCD, probably the first worldwide documentation of a compound delta within the transgressive record, provides the opportunity to investigate the processes controlling the formation of a compound delta system during an overall sea level rise and the factors that allowed its preservation. The finding of the PGCD provides the opportunity of a comparison with modern worldwide compound systems.
Marine Geology (0025-3227) (Elsevier Science Bv), 2015-04 , Vol. 362 , P. 43-59

Droits : 2015 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00250/36158/34714.pdf
DOI:10.1016/j.margeo.2015.01.010
http://archimer.ifremer.fr/doc/00250/36158/

Éditeur(s) : HAL CCSD
Résumé : Taiwan is a young mountain belt, known as one of the most active area in the world. Since the beginning of the 20th century more than twenty _ Mw 7 earthquakes have struck the island. However, the occurrence of larger events (_Mw 8) is still a matter of debate. In this framework it is of key importance to obtain longer record in order to evaluate the occurrence of large past earthquakes. The sub-aqueous paleoseismology, based on the record of the sedimentary gravity deposits, appears as a serious alternative to approach this thematic and is a rapidly advancing field that has the potential to illuminate the long-term history of seismicity.The first part of this work was to investigate the present sedimentary systems off east Taiwan, essential to understand the morphosedimentary features, sedimentary facies and processes governing the evolution of the submarine slope, and the controlling factors of the recent sedimentation. Our results showed that the offshore slope east Taiwan is affected by a variety of sedimentary systems and processes, and that turbidity currents appear as the main erosional processes covering nearly 60% of the sedimentary record. Turbidity currents are generated by distinct controlling factors such as tectonic and climatic activity that enabled us to define twoend-members relative to turbidity currents initiation: Turbidity currents preconditioned by tectonic activity and triggered by earthquakes shaking and likely deposited into intra-slope basin and turbidity currents driven by climatic activity such as extreme floods or typhoons, generated in basin directly connected with onland rivers.The second part consisted to apply a paleoseismic approach, based on turbidites record, at two time-scales. First, we tested and validated the method by correlating turbidites deposits with instrumental earthquakes. Then, once calibrated we extended the time-series back in time. We dated the three most recent turbidites layers circa 2001 ± 3 AD, 1950 ± 5 AD and 1928 ± 10 AD. Using empirical relationship that link peakground acceleration, distance and magnitude to calibrate the seismic sources, we correlate these three turbidites with instrumental earthquakes: the Chengkong Earthquake 12/10/2003 (Mw 6.8), the 11/24/1951 Taitung Earthquake (Mw 7.1) and the 9/4/1935 Lutao Earthquake (Mw 7.0) respectively. Applying criteria to discriminating the different triggering mechanisms for turbidity current generation, we propose that earthquakes are the main triggering mechanisms. Dating and age modeling provided a part of the chronology of extreme events since the last 3000 years and allowed us to estimate return time for earthquakes Mw _ 6.8.This work represents a good starting-point for future investigations in order to better assess Holocene time series of extreme events.
La chaine de Taïwan représente l’une des zones les plus actives au monde. Depuis le début du XXe siècle, plus d’une vingtaine de séismes _Mw 7 ont affecté l’île. Cependant la probabilité d’occurrence de séismes plus importants (_Mw 8) est toujours matière à débat. Dans un tel contexte, il apparait donc important d’obtenir des enregistrements plus anciens pour évaluer l’occurrence de tels évènements. La paléosismologie marine, basée sur l’enregistrement des dépôts issus de la sédimentation gravitaire, apparait comme une alternative sérieuse afin d’illuminer l’histoire de la sismicité sur des périodes anciennes. Ce travail de thèse apporte de nouvelles contraintes sur l’histoire sismique au large, à l’est de Taïwan, au cours des derniers 3000 ans.La première partie de ce travail consiste à caractériser les systèmes sédimentaires récents. Cette étape fut essentielle pour la compréhension des processus, faciès sédimentaires et les facteurs de contrôle de la sédimentation qui régissent l’évolution de la pente sous-marine. Ces résultats ont montré que l’Est de Taïwan est caractérisé par une grande variabilité de processus et que les courants de turbidité dominent l’enregistrement sédimentaire.Les courants de turbidité sont générés par deux facteurs distincts : l’activité tectonique/sismique et l’activité climatique. La deuxième partie de ce travail est consacrée à l’approche paléosismique en utilisant les dépôts de turbidités comme marqueurs des paléoséismes. Pour ce faire, nous avons dans un premier temps testé et validé l’approche à l’échelle du siècle dernier. Ensuite une fois calibré, nous avons pu étendre les séries temporelles à l’échelle de l’Holocène. Nous avons daté les trois plus récents évènements turbiditiques autour de 2001 ± 3 AD, 1950 ± 5 AD et 1928 ± 10 AD. En utilisant des relations empiriques intégrant magnitude, distance et valeur du "peak ground acceleration", nous avons pu calibrer la source sismique et ainsi corréler ces trois turbidites à trois séismes instrumentaux : le séisme de Chengkong (12/10/2003) (Mw 6.8), le séisme de Taitung (11/24/1951) (Mw 7.1) et le séisme de Lutao (9/4/1935) (Mw 7.0). Au-delà du siècle dernier, les datations et modèles d’âges nous permettent d’établir une partie de la chronologie des évènements extrêmes sur une période de 3000 ans et d’estimer un temps de retour pour des évènements de l’ordre _Mw 7. Les résultats ont toutefois montré que ces temps de retour sont nettement supérieurs à ceux connus sur le siècle dernier, ce qui suggère que tous les séismes ne sont pas enregistrés par les dépôts sédimentaires marins. Ce travail de thèse a donc permis de montrer que les dépôts issus de la sédimentation évènementielle peuvent être considérés comme marqueurs de la sismicité et que cette approche peut constituer un outil complémentaire pour les études portant sur le risque sismique.
https://tel.archives-ouvertes.fr/tel-01661529

NNT : 2014MON20133
tel-01661529
https://tel.archives-ouvertes.fr/tel-01661529
https://tel.archives-ouvertes.fr/tel-01661529/document
https://tel.archives-ouvertes.fr/tel-01661529/file/55796_LEHU_2014_archivage_cor.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Background: In French Guiana, a recent study has shown that a major part of the histoplasmosis incidence temporal fluctuations could be explained by climatic factors and thus postulated that disseminated histoplasmosis cases could be in a large proportion due to new infections. The description of the seasonal pattern of histoplasmosis could potentially help to test this new hypothesis. Patients and methods: A study using prospective data from the French Hospital Database for HIV was conducted in order to determine seasonal variations of the incidence of first cases of disseminated histoplasmosis in HIV persons in Cayenne, French Guiana. Single failure Cox proportional hazards models were used. Results: After adjusting for CD4 counts and antiretroviral treatment, the incidence of disseminated histoplasmosis was significantly higher during the Short Wet Season-Long Dry Season than during the Short Dry Season-Long Wet Season (Adjusted Hazard ratio 1.7 (1.1-2.5), P= 0.01). Conclusion: This result gives both valuable epidemiologic information to clinicians and a supplementary argument in favour of the hypothesis that an important proportion of cases were due to recent exposure. Therefore, the use of a primary prophylaxis must be discussed in French Guiana.
J AIDS Clinic Res

Droits : info:eu-repo/semantics/OpenAccess
inserm-00915009
http://www.hal.inserm.fr/inserm-00915009
http://www.hal.inserm.fr/inserm-00915009/document
http://www.hal.inserm.fr/inserm-00915009/file/2012_Hanf_-_Disseminated_Histoplasmosis_seasonal_incidence_variations_a_supplementary_argument_for_recent_infection.pdf
DOI : 10.4172/2155-6113.1000175

Éditeur(s) : Public Library Science
Résumé : Background: Reconstructing the history of divergence and gene flow between closely-related organisms has long been a difficult task of evolutionary genetics. Recently, new approaches based on the coalescence theory have been developed to test the existence of gene flow during the process of divergence. The deep sea is a motivating place to apply these new approaches. Differentiation by adaptation can be driven by the heterogeneity of the hydrothermal environment while populations should not have been strongly perturbed by climatic oscillations, the main cause of geographic isolation at the surface. Methodology/Principal Finding: Samples of DNA sequences were obtained for seven nuclear loci and a mitochondrial locus in order to conduct a multi-locus analysis of divergence and gene flow between two closely related and hybridizing species of hydrothermal vent mussels, Bathymodiolus azoricus and B. puteoserpentis. The analysis revealed that (i) the two species have started to diverge approximately 0.760 million years ago, (ii) the B. azoricus population size was 2 to 5 time greater than the B. puteoserpentis and the ancestral population and (iii) gene flow between the two species occurred over the complete species range and was mainly asymmetric, at least for the chromosomal regions studied. Conclusions/Significance: A long history of gene flow has been detected between the two Bathymodiolus species. However, it proved very difficult to conclusively distinguish secondary introgression from ongoing parapatric differentiation. As powerful as coalescence approaches could be, we are left by the fact that natural populations often deviates from standard assumptions of the underlying model. A more direct observation of the history of recombination at one of the seven loci studied suggests an initial period of allopatric differentiation during which recombination was blocked between lineages. Even in the deep sea, geographic isolation may well be a crucial promoter of speciation.
Plos One (1932-6203) (Public Library Science), 2009-08 , Vol. 4 , N. 8 , P. 1-15

Droits : 2009 Faure et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00129/24012/21972.pdf
DOI:10.1371/journal.pone.0006485
http://archimer.ifremer.fr/doc/00129/24012/

Éditeur(s) : HAL CCSD
Résumé : At present, the forecasting of littoral evolution presents a considerable social stake. Many studies have been achieved to better understand coastal dynamics. Such dynamics are controlled by morphology, sediment supply, hydrodynamics, eustacy... at different time scales. At geological time scale, deposits geometry, controlled by eustacy and subsidence, is succesfully analysed where sediment supply is high. But the littoral zones present important sediment supply variability. In low sediment supply areas, the record of coastal tracts is smaller and harder to interprete. Analyses of about 250 kilometres of new VHR seismic profiles acquired along the languedocian coast (Northern Gulf of Lion, France), tens of short cores and outcrops data allowed us to determine the three-dimensional high-resolution geometry of the coastal tracts from Quaternary to present-day. This highlighted the role of alongshore dynamics in coast where direct sediment supply is low. The concepts of protected lagoon and isolated lagoon were broughted to the fore and the effect of inherited incised valley morphology was discussed. Last, a complementary study by analogue modeling of the channel incision processes controled by eustatic and climatic changes allowed to discuss the role of incised valleys in coastal areas.
Actuellement, la prévision de l'évolution d'un système littoral représente un enjeu social important. De nombreuses études sont réalisées afin de mieux connaitre la dynamique côtière et donc de comprendre les facteurs qui influencent son évolution. Cette dynamique est contrôlée par la morphologie, les apports sédimentaires, l'hydrodynamique, l'eustatisme... qui agissent à des échelles de temps différentes et avec de fortes interactions. A l'échelle géologique, l'architecture des dépôts, contrôlée par l'eustatisme et la subsidence, est parfaitement décrite dans les zones à forts apports sédimentaires. Par contre, dans les zones à faibles apports sédimentaires, l'enregistrement des cortèges côtiers est réduit et est difficile à interpréter. L'analyse de 250 kilomètres de profils sismiques THR sur le littoral languedocien (Nord du Golfe du Lion, France), de carottages et de données de terrain a permis de déterminer la géométrie en trois dimensions des cortèges sédimentaires côtiers depuis le Quaternaire jusqu'à l'actuel. Ces observations montrent l'importance de la dynamique longshore sur les littoraux pauvres en apports sédimentaires directs. De plus, l'étude d'un système lagunaire sur ce littoral met en évidence les concepts de lagunes protégées et lagunes isolées ainsi que l'importance des vallées incisées dans la génèse de ces environnements. Enfin, la modélisation en laboratoire des processus d'incision de chenaux sous contrôle eustatique et climatique permet de discuter le rôle des vallées incisées en milieu côtier.
https://tel.archives-ouvertes.fr/tel-00542897

tel-00542897
https://tel.archives-ouvertes.fr/tel-00542897
https://tel.archives-ouvertes.fr/tel-00542897/document
https://tel.archives-ouvertes.fr/tel-00542897/file/theseraynaldef.pdf