Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The modern high topography of the Tianshan resulted from the reactivation of a Paleozoic orogenic belt by the India/Asia collision. Today, the range exhibits tectonically active forelands and intermontane basins. Based on quantitative morphotectonic observations and age constraints derived from cosmogenic 10Be dating, single-grain post-infrared infrared stimulated luminescence (p-IR IRSL) dating and modeling of fault scarp degradation, we quantify the deformation in the Nalati and Bayanbulak intermontane basins in the central Eastern Tianshan. Our results indicate that at least 1.4 mm/yr of horizontal crustal shortening is accommodated within these two basins. This shortening represents over 15% of the 8.5 ± 0.5 mm/yr total shortening rate across the entire range at this longitude. This shortening rate implies that the Eastern Central Tianshan is thickening at a mean rate of ∼1.4 mm/yr, a rate that is significantly higher than the average denudation rate of 0.14 mm/yr derived from our cosmogenic analysis. This discrepancy suggests that the Tianshan range has not yet reached a steady-state topography and remains in a transient state of topographic growth, most likely due to limited denudation rates driven by the arid climate of Central Asia.
ISSN: 0012-821X

insu-01610154
https://hal-insu.archives-ouvertes.fr/insu-01610154
DOI : 10.1016/j.epsl.2017.09.025

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In East Asia, widespread extensional sedimentary basins together with the close association of Metamorphic Core Complexes and magmatism are prominent features of the large-scale wide rift system developed during late Mesozoic times. This region thus appears as a proper place to study continental extension as well as questions about the link between continental extension and magmatism. This paper primarily provides pioneer exhumation time-constraints on the Linglong MCC (Jiaodong Peninsula) including cooling and deformation ages. MCC cooling at mid-crustal levels occurred at ca. 143 Ma. Besides, last ductile deformation occurred at ca. 134 Ma while final exhumation stages, under brittle 2 conditions, occurred as late as ca. 128 Ma. Continuous crustal stretching were then recorded by the emplacement of a synkinematic pluton in the upper crust at ca. 128 Ma that cooled fast below an intracrustal shear zone crossing the ductile-brittle transition at ca. 123 Ma. The ca. 120-118 Ma age cluster is ascribed to the fast cooling of undeformed plutons marking the end of extension that lasted, in the area, over a minimum period of ca. 30 My. Combining other MCC exhumation constraints and the onset of subsidence in the sedimentary basins, total duration of late Mesozoic extension in East Asia could be estimated at ca. 60 My, related with a rather long process for extension from 160 to at least 100 Ma. East Asian continental extension is heterogeneously distributed in space and time as revealed by fundamental differences between two end-member classes of migmatite-cored MCC already described in other wide rift systems. Extension seems to have first favoured partial melting which subsequently, in turn, maintained continental extension.
ISSN: 1342-937X

insu-00752551
https://hal-insu.archives-ouvertes.fr/insu-00752551
https://hal-insu.archives-ouvertes.fr/insu-00752551/document
https://hal-insu.archives-ouvertes.fr/insu-00752551/file/Charles_et_al_Gondwana_Research_2012.pdf
DOI : 10.1016/j.gr.2012.10.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Crystal growth driven by a flowing solution is modeled for a flow with low Reynolds number using a computational dynamic software. Considering equivalent crystallographic faces, the chemical flux is calculated along upstream and downstream faces. Upstream flux is higher compared to downstream and leads to a symmetry breakdown of the crystal shape and develops mirror symmetry parallel to the flow velocity. Moreover the ratio of these two fluxes (upstream / downstream) gives a quantitative relation between the relative crystal growth rate and the flow velocity. Thus, using an inverse method, the flow direction and velocity can be deduced by the study of the variation of the growth band thicknesses of equivalent crystallographic faces. This new method was applied to the formation of metasomatic tourmalinite associated with a leucogranite sill. The approach is complemented by a study of the chemistry of the tourmaline. In the studied case, the application of the new method gives the high fluid velocities in pores (10-3 - 10-4 m/s) during metasomatism. Equivalent Darcy velocities are estimated and discussed accounting for the major role played by the regional deformation. Finally, a two-stage tectono-hydrodynamic model is proposed for the metsomatism. The first stage is genetically linked to the sill injection, and the second is characterized by a wider event with hydrothermal flow passing along the leucogranite sills.
ISSN: 0012-821X

Droits : info:eu-repo/semantics/OpenAccess
insu-00352307
https://hal-insu.archives-ouvertes.fr/insu-00352307
https://hal-insu.archives-ouvertes.fr/insu-00352307/document
https://hal-insu.archives-ouvertes.fr/insu-00352307/file/Sizaret_et_al_final.pdf
DOI : 10.1016/j.epsl.2009.01.013

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
The present-day topography of the Tian Shan range is considered to result from crustal shortening related to the ongoing India-Asia collision that started in the early Tertiary. In this study we report evidence for several episodes of localized tectonic activity which occurred prior to that major orogenic event. Apatite fission track analysis and (U-Th)/He dating on apatite and zircon indicate that inherited Paleozoic structures were reactivated in the late Paleozoic-early Mesozoic during a Cimmerian orogenic episode and also in the Late Cretaceous-Paleogene (around 65-60 Ma). These reactivations could have resulted from the accretion of the Kohistan-Dras arc or lithospheric extension in the Siberia-Mongolia zone. Activity resumed in the late Mesozoic prior to the major Tertiary orogenic phase. Finally, the ongoing deformation, which again reactivates inherited tectonic structures, tends to propagate inside the endoreic basins that were preserved in the range, leading to their progressive closure. This study demonstrates the importance of inherited structures in localizing the first increments of the deformation before it propagates into yet undeformed areas.
ISSN: 0278-7407

Droits : info:eu-repo/semantics/OpenAccess
hal-00551323
https://hal.archives-ouvertes.fr/hal-00551323
https://hal.archives-ouvertes.fr/hal-00551323/document
https://hal.archives-ouvertes.fr/hal-00551323/file/2010TC002712.pdf
DOI : 10.1029/2010TC002712

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The present study aims to apply the AMS method (Anisotropy of Magnetic Susceptibility) at a regional scale to track the fluid circulation direction that has produced an iron metasomatism within pre-existing dolomite host rock. The Urgonian formations hosting the Zn-Pb mineralizations in La Florida (Cantabria, northern Spain) have been taken as target for this purpose. Sampling was carried out, in addition to ferroan dolomite host rock enclosing the Zn-Pb mineralizations, in dolomite host rock and limestone to make the comparison possible between magnetic signals from mineralized rocks, where fluid circulation occurred, and their surrounding formations. AMS study was coupled with petrofabric analysis carried out by texture goniometry, Scanning Electron Microscopy (SEM) observations and also Shape Preferred Orientation (SPO) statistics. SEM observations of ferroan dolomite host rock illustrate both bright and dark grey ribbons corresponding respectively to Fe enriched and pure dolomites. SPO statistics applied on four images from ferroan dolomite host rock give a well defined orientation of ribbons related to the intermediate axis of magnetic susceptibility K2. For AMS data, two magnetic fabrics are observed. The first one is observed in ferroan dolomite host rock and characterised by a prolate ellipsoid of magnetic susceptibility with a vertical magnetic lineation. The magnetic susceptibility carrier is Fe-rich dolomite. These features are probably acquired during metasomatic fluid circulations. In Fe-rich dolomite host rock, ‹c› axes are vertical. As a rule, (0001) planes (i.e. planes perpendicular to ‹c› axes) are isotropic with respect to crystallographic properties. So, the magnetic anisotropy measured in this plane should reflect crystallographic modification due to fluid circulation. This is confirmed by the texture observed using the SEM. Consequently, AMS results show a dominant NE-SW elongation interpreted as the global circulation direction and a NW-SE secondary elongation that we have considered as sinuosities of the fluid trajectory. The second type of magnetic fabric is essentially observed in the limestone and characterised by an oblate form of the ellipsoid of magnetic susceptibility, a horizontal magnetic foliation and mixed magnetic susceptibility carriers. It is interpreted as a sedimentary fabric.
ISSN: 0012-821X

insu-00342499
https://hal-insu.archives-ouvertes.fr/insu-00342499
https://hal-insu.archives-ouvertes.fr/insu-00342499/document
https://hal-insu.archives-ouvertes.fr/insu-00342499/file/Essalhi-EPSL-2008.pdf
DOI : 10.1016/j.epsl.2008.11.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Mechanism and kinematics of the Late Mesozoic continental extension event of eastern Asia are still debated. In order to better constrain its evolution, two granodioritic plutons of the Jiaodong Peninsula have been chosen as targets for a time-constrained palaeomagnetic study. Indeed, plutons are devoid of visible deformation, did not experience rotation along horizontal axis and are precisely dated by U/Pb and 40Ar/39Ar methods. Multidomain (MD) magnetite has been identified as the principal magnetic remanent carrier. The interpolation of existing and new U/Pb and 40Ar/39Ar ages revealed that characteristic remanent magnetisation was acquired in a narrow range of 116 ± 2 Ma. Twenty out of 27 sites present stable magnetic directions calculated from high-temperature or high-coercive components. The observations of the solo normal magnetic polarity for this palaeomagnetic collection and of the magnetic remanent age consistent with the Cretaceous Normal Superchron (CNS) argue that the characteristic magnetic remanence may be considered as primary. Detailed field observations of the intrusive relationship between the plutons and country rocks and Anisotropy of Magnetic Susceptibility (AMS) study reveal the absence of the subsequent deformation of plutons, or rigid rotation of plutons along a horizontal axis. Two palaeomagnetic poles have been therefore calculated from these plutons. Among 12 out 15 Cretaceous palaeomagnetic poles, including the two new poles provided by this study, from the Jiaodong Peninsula and on both sides of Tan-Lu and Muping-Jimo faults are statistically consistent. As a result, the Jiaodong Peninsula behaved as a rigid block as internal deformation appears negligible. The remaining three derived poles are probably due to the secular variation or/and the vicinity of fault zones near of the palaeomagnetic sampling site. Thus, they can not be applied to the peninsula-scaled tectonics. Comparison of these time52 constrained Cretaceous palaeomagnetic results of the Jiaodong Peninsula with those of North China Block (NCB) indicate that the Jiaodong Peninsula was rigidly attached to NCB since, 3 at least, the Cretaceous as residual difference is clearly insignificant with respect to the error brackets. These new palaeomagnetic results confirm that the relative clockwise (CW) rotation of Eastern Liaoning-Korea Block (ELKB) with respect to NCB does not affect the Jiaodong Peninsula as a rigid block, nevertheless, some tectonic structures have been reactivated since Cenozoic and local rotations could be produced. This palaeomagnetic study reveals that the Late Mesozoic extension in Eastern Asia is heterogeneously expressed in time and space. The complete understanding of the mechanism(s) of this extensional event needs further multidisciplinary investigations.
ISSN: 0031-9201

insu-00599546
https://hal-insu.archives-ouvertes.fr/insu-00599546
https://hal-insu.archives-ouvertes.fr/insu-00599546/document
https://hal-insu.archives-ouvertes.fr/insu-00599546/file/Charles_et_al_PEPI2011.pdf
DOI : 10.1016/j.pepi.2011.05.006

Éditeur(s) : HAL CCSD
Résumé : International audience
Tin mineralization in Achmmach deposit (NE of Moroccan Central Massif) is associated with tourmaline-rich alteration halos and faults, within N70 shear zones, hosted in sandstones and metapelites of the Upper Visean-Namurian. Such deposits were reported as late-Variscan in age and related to the emplacement of late orogenic granite not outcropping in the studied area.From field constraints, it appears that the late Variscan phase is marked by a transition from transpression to extension with conditions of deformation evolving from ductile to brittle environments. During the transpressive phase (horizontal shortening direction roughly trending E-W), pervasive tourmaline is deposited under the form of metasomatic halos around fractures in the upper levels relative to the deep batholith. This hydrothermal activity is coeval with ductile shear zones within a large corridors trending N70. Tourmaline-rich alteration appears as a hardening stage contributing to the modification of the tectonic style of rocks. Thereafter, a strong brecciation occurs in response of re-using and re-opening of the strike-slip structure. The result is (1) the formation of dextral (N070, N020) and sinistral (N120) shears, and (2) the circulation of fluids within early tourmalinites and formation of tourmaline-rich breccia. Subsequently, during the late orogenic extensional phase, tourmalinite breccias reopened as normal faults acting as overpressure fluid pathways for developing other breccias and veins. Such event is marked by deposition of tin mineralization i.e., cassiterite followed by sulphides, and then fluorite and carbonates at the end.From analysis of the shear-zone structure and superimposition of tourmalines and tin mineralization in the same structures, it is possible to suggest a structural control continuum. Such control is well expressed during metasomatism and deposition of hydrothermal tourmaline under the transpressive phase. Thereafter, under the extensive phase allowing open-space, tin-mineralization were trapped.This study has been supported by AI MA/09/210
24ème RST
Pau, France

insu-01546927
https://hal-insu.archives-ouvertes.fr/insu-01546927

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
The Tian Shan Mountains constitute central Asia's longest and highest mountain range. Understanding their Cenozoic uplift history thus bears on mountain building processes in general, and on how deformation has occurred under the influence of the India-Asia collision in particular. In order to help decipher the uplift history of the Tian Shan, we collected 970 samples for magnetostratigraphic analysis along a 4571-m-thick section at the Jingou River (Xinjiang Province, China). Stepwise alternating field and thermal demagnetization isolate a linear magnetization component that is interpreted as primary. From this component, a magnetostratigraphic column composed of 67 polarity chrons are correlated with the reference geomagnetic polarity timescale between ~1 Ma and ~23.6 Ma, with some uncertainty below ~21 Ma. This correlation places precise temporal control on the Neogene stratigraphy of the southern Junggar Basin and provides evidence for two significant stepwise increases in sediment accumulation rate at ~16–15 Ma and ~11–10 Ma. Rock magnetic parameters also undergo important changes at ~16–15 Ma and ~11–10 Ma that correlate with changes in sedimentary depositional environments. Together with previous work, we conclude that growth history of the modern Tian Shan Mountains includes two pulses of uplift and erosion at ~16–15 Ma and ~11–10 Ma. Middle to upper Tertiary rocks around the Tian Shan record very young (<~5 Ma) counterclockwise paleomagnetic rotations, on the order of 15° to 20°, which are interpreted as because of strain partitioning with a component of sinistral shear that localized rotations in the piedmont.
ISSN: 0278-7407

insu-00376345
https://hal-insu.archives-ouvertes.fr/insu-00376345
https://hal-insu.archives-ouvertes.fr/insu-00376345/document
https://hal-insu.archives-ouvertes.fr/insu-00376345/file/2007TC002137.pdf
DOI : 10.1029/2007TC002137

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
We combine surface structural measurements, subsurface seismic imaging, and magneto-stratigraphic dating to retrieve, through geometric modeling, the detailed history of fold growth and sedimentation across the Huerguosi anticline, on the northern Tianshan piedmont, taking advantage of a beautifully exposed section of growth strata. The model assumes a fault-bend folding mechanism, consistent with subsurface fold geometry. The shortening history is obtained by least-squares fitting of the measured dip angles of the growth strata. The shortening rate across the anticline is shown to have been remarkably constant: it increased only slightly from 0.84 ± 0.04 mm/yr between 10 and 4 Ma to 1.14 ± 0.02 mm/yr over the past 4 m.y. This approach also allows correcting syntectonic sedimentation rates for the effect of the fold growth and shows that the sedimentation rates in the piggyback basin increased abruptly from ~0.4 to ~0.7 mm/yr ca. 4 Ma.
ISSN: 0091-7613

insu-00338254
https://hal-insu.archives-ouvertes.fr/insu-00338254
DOI : 10.1130/G25073A.1

Éditeur(s) : HAL CCSD
Résumé : International audience
The Achmmach tin mineralization (NE of theMoroccan Central Massif) is associated with tourmaline-richalteration halos, veins, and faults hosted in sandstones andmetapelites of the Upper Visean-Namurian. These depositsare reported to be late Hercynian in age and related to theemplacement of late-orogenic granite not outcropping in thestudied area. Structural and paragenetic studies of theAchmmach tin deposit were conducted in order to establisha general model of the mineralization. From field constraints,the late Hercynian phase is marked by a transition fromtranspression to extension with deformation conditions evolvingfrom ductile to brittle environments. The transpression(horizontal shortening direction roughly trending E-W) is coevalwith the emplacement of the first tourmaline halos alongseveral conjugated trends (N070, N020, and N120).Thereafter, a tourmaline-rich breccia formed in response tothe fracturing of early tourmaline-altered rocks.Subsequently, during the extensional phase, these structureswere reactivated as normal faults and breccias, allowing theformation of the main tin mineralization (cassiterite) associatedwith a wide variety of sulfides (arsenopyrite, chalcopyrite,sphalerite, galena, pyrrhotite, bismuthinite, pyrite, and stannite). This evolution ends with fluorite and carbonate deposition.The hydrothermal fluid flow velocity, calculated byapplying statistical measures on the tourmaline growth bands,varies with the lithology. Values are lower in metapelites andhigher in breccia. In the general evolution model proposedhere, tourmaline alteration makes the rock more competent,allowing for brittle fracturing and generation of open spacewhere the main Sn mineralization was precipitated.
Mineralium Deposita

insu-01240481
https://hal-insu.archives-ouvertes.fr/insu-01240481
DOI : 10.1007/s00126-015-0613-0

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Tarim and Junggar basins in central Asia are capped by a thick pile of conglomerates, called the Xiyu Formation, that are commonly linked to a change in climate and/or accelerated uplift near the Plio-Pleistocene boundary. In order to better understand their origin and significance, we carried out a combined structural and magnetostratigraphic study in the Quilitage syncline (southern Tianshan), where the base of the Xiyu conglomerates is observed at both sides of the syncline. A balanced cross-section shows that, even at a local-scale, the base of the Xiyu conglomerates cannot be regarded as a single continuous stratigraphic layer. On the southern flank of the Quilitage syncline, we collected 172 samples collected for magnetostratigraphic dating identify 17 polarity chrons that date the new section from 5.2 to ~ 1.7 Ma and constrain the base of the Xiyu conglomerate here at ~ 1.7 Ma. This is 4.2 Ma younger than the age of the Xiyu previously found on the northern limb of the same syncline. Together with other magnetostratigraphic studies carried out around the Tianshan, our study unambiguously demonstrates that the onset of deposition of the Xiyu conglomerates is diachronous, and that the conglomerates are systematically younger toward the basin. Consequently, the Xiyu Formation should not be considered as a chronostratigraphic marker related to any particular tectonic or climatic event, but is instead a prograding gravel wedge that has prograded over the underthrusting forelands. A synthesis of chronologic and structural results yields progradation rates over the last 10 Ma on the order of ~ 2.0 mm/yr and ~ 3.9 mm/yr south and north of the Tianshan Mountains respectively. These rates are comparable to the shortening rate across the Tianshan range, suggesting that underthrusting is the main factor governing the progradation rate of the Xiyu Formation.
ISSN: 0012-821X

insu-00414151
https://hal-insu.archives-ouvertes.fr/insu-00414151
https://hal-insu.archives-ouvertes.fr/insu-00414151/document
https://hal-insu.archives-ouvertes.fr/insu-00414151/file/Charreau-EPSL-2009.pdf
DOI : 10.1016/j.epsl.2009.07.035