Éditeur(s) : HAL CCSD Taylor & Francis
Résumé :  
We compared floral odour profiles among populations of two Arum species which show different degrees of specificity for their fly pollinators. Insects were collected from inflorescences in four populations of Arum italicum and two populations of Arum maculaturn. In six Arum populations, we compared inflorescences odour profiles collected by Solid Phase Micro Extraction (SPME) and analysed by gas chromatography. We confirmed that from a pollination point of view, A. italicum is an opportunist species, as it is mainly pollinated by insects of the families Psychodidae, Chironomidae and Sciaridae, whereas A. maculatum is a specialist species, as it is 90% pollinated by Psychodidae. In all populations, Arum italicum was less attractive to pollinators than Arum maculatum. Floral odour profiles of A. italicum were not geographically structured among populations, suggesting a high gene flow or adaptation to a fluctuant guild of pollinators. On the contrary, odour profiles of A. maculatum varied between the two populations studied suggesting a lower gene flow or adaptation to different local pollinator preferences
ISSN: 0037-9271

hal-01019003
https://hal.archives-ouvertes.fr/hal-01019003

Éditeur(s) : HAL CCSD University of California, Los Angeles
Résumé : International audience
The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package
ISSN: 1548-7660

hal-01498361
https://hal-agroparistech.archives-ouvertes.fr/hal-01498361
DOI : 10.18637/jss.v067.c03

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In chemoautotrophic associations, sequence comparison of 16S rRNA has been the method of choice to study bacterial diversity in the context of host/symbiont coevolution. However, the relative low rate of evolution of 16S rRNA has been shown to result in a diminished capacity to discriminate between closely related bacterial strains or species. Within chemoautotrophic associations, as described in several studies, the use of other genetic markers may reveal previously unobserved strain diversity among gill endosymbionts. Herein, we conducted a survey of symbionts harbored by six species within the Lucinidae family using five genetic markers (dnaE, gyrB, aprA, cbbL genes and the 16S-23S internal transcribed spacer). Thus, within the already described SoLuc₁ bacterial species shared by six host species we observed an obvious bacterial strain diversity. This diversity is structured in function of the geographic location of the hosts and not in function of ecological parameters or host phylogeny. Interestingly at the local level (same seagrass bed environment), we observed an unexpected specificity in host species/bacterial strain association (i.e., all individuals of the same host species harbor the same symbiotic sequence type). This specificity of association implied that there was a control of symbiont strain acquisition by the host, which was confirmed by a cross-infection experiment of starved adults performed in our study. Based upon our results and other evidence from the literature, we hypothesize that this pattern may be due to a ``capture/escape'' type antagonist evolution of the two partners.
ISSN: 0025-3162

hal-01544753
https://hal.archives-ouvertes.fr/hal-01544753
DOI : 10.1007/s00227-016-2949-0

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Morphology can be misleading in the representation of phylogenetic relationships, especially in simple organisms like cnidarians and particularly in hydrozoans. These suspension feeders are widely distributed in many marine ecosystems, and the family Aglaopheniidae Marktanner-Turneretscher, 1890 is among the most diverse and visible, especially on tropical coral reefs. The taxonomy of this family is based on morphological characters with emphasis on reproductive structures for the identification of genera. This study is the most comprehensive molecular phylogeny of the Aglaopheniidae to date, including six genera and 38 species, of which 13 were investigated for the first time and sampled on tropical coral reefs throughout the Indo-Pacific region. For newly sampled individuals, we sequenced the 16S rRNA, the nuclear locus comprising the complete ITS1-5.8S rRNA gene-ITS2 and the first intron of the calmodulin nuclear gene. Phylogenetic analyses of the data revealed and confirmed a general polyphyly, or doubtful monophyly, of all sampled genera in tropical regions based on both the mitochondrial and nuclear markers. Our results revealed that several morphological characters used today are unsuited to resolve phylogenetic relationships between species and genera, as well as the high phyletic diversity within this family. Future revision of the classification of this family will require extensive geographic sampling and the use of an integrative approach.
ISSN: 0300-3256

hal-01253738
https://hal.archives-ouvertes.fr/hal-01253738
https://hal.archives-ouvertes.fr/hal-01253738/document
https://hal.archives-ouvertes.fr/hal-01253738/file/Phylogenetic%20relationships%20within%20Aglaopheniidae%20%28Cnidaria%2C._hal.pdf
DOI : 10.1111/zsc.12135

Éditeur(s) : HAL CCSD Elsevier
Résumé : Field isolates of Toxoplasma gondii in Europe and North America have been grouped into three clonal lineages that display different virulence in mice. Whether the genetic structure of the parasite is related to clinical expression in humans has not yet been demonstrated. We developed an enzyme-linked immunosorbent assay which uses lineage-specific, polymorphic polypeptides derived from the dense granule antigens, GRA5 and GRA6. Our goal was to compare serotypical patterns observed in asymptomatic versus symptomatic (ocular disease and severe infection in human immunodeficiency virus (HIV)-positive patients) infections among patients from Europe and South America. Independent of the clinical presentation of the disease, serotypes differed according to geographical origin, with a homogeneous distribution of serotype II in Europe and of serotypes I and III in South America. We conclude that GRA5-GRA6 serotyping is an interesting tool to study serotype prevalence in populations but it is not an accurate marker of pathogenicity of Toxoplasma infection in humans.
ISSN: 1286-4579

hal-00306841
https://hal.archives-ouvertes.fr/hal-00306841
DOI : 10.1016/j.micinf.2008.04.001
PUBMED : 18539501

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
A temporary network of 10 broad-band seismic stations has been installed in French Polynesia for the Polynesian Lithosphere and Upper Mantle Experiment (PLUME). All the seismic stations were installed either on volcanic islands or on atolls of the various archipelagos of French Polynesia in a manner which complements the geographic coverage provided by the regional permanent stations. The primary aim of PLUME is to image the upper mantle structures related to plate motion and hotspot activity. However, because of its proximity to all sites, the ocean is responsible for a high level of noise in the seismic data and we show that these data can also be used to analyse ocean wave activity. The power spectral density (PSD) analyses of the seismic data recorded in French Polynesia show clear peaks in the 0.05– 0.10 Hz band (periods between 10 and 20 s), which corresponds to swell frequencies. Clear peaks in this frequency band are also observed in infrasonic data recorded on Tahiti. Ground motion analysis shows that the swell-related seismic noise (SRSN) is linearly polarized in the horizontal plane and its amplitude decreases rapidly with the distance from the shore. The microseismic and the infrasonic 'noise' amplitudes show very similar variations from station to station and both are strongly correlated with the swell amplitudes predicted by the National Oceanic and Atmospheric Administration (NOAA), wind-forced, 'WaveWatch' models. The swell direction can be estimated from SRSN polarization analysis but this has to be done with care since, for some cases, the ground motions are strongly controlled by the islands' anisometric shapes and by swell refraction processes. We find cases, however, such as Tahiti or roughly circular Tuamotu atolls, where the azimuth of the swell is in good agreement with the seismic estimates. We, therefore, demonstrate that the SRSN and the infrasonic signal observed in French Polynesia can be used in such cases as a proxy for swell amplitude and azimuth. From the continuous analysis of the data recorded in 2003 at the permanent seismic station PPTL in Tahiti, transfer functions have been obtained. This could provide a way to quantify the swell activity during the last two decades and, therefore, assist in the investigation of climate changes.
ISSN: 0956-540X

hal-01323691
http://hal.univ-reunion.fr/hal-01323691
http://hal.univ-reunion.fr/hal-01323691/document
http://hal.univ-reunion.fr/hal-01323691/file/Barruol_et_al_2006.pdf
DOI : 10.1111/j.1365-246X.2006.02871.x

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Our understanding of the contribution of interspecific interactions to functional diversity in nature lags behind our knowledge of spatial and temporal patterns. Although two-species mutualisms are found in all types of ecosystems, the study of their ecological influences on other community members has mostly been limited to third species, while their influence on entire communities remains largely unexplored. 2. We hypothesized that mutualistic interactions between two respective ant species and an epiphyte mediate the biological traits composition of entire invertebrate communities that use the same host plant, thereby affecting food webs and functional diversity at the community level. 3. Aechmea mertensii (Bromeliaceae) is both a phytotelm ('plant-held water') and an ant-garden epiphyte. We sampled 111 bromeliads (111 aquatic invertebrate communities) associated with either the ant Pachycondyla goeldii or Camponotus femoratus. The relationships between ants, bromeliads and invertebrate abundance data were examined using a redundancy analysis. Biological traits information for invertebrates was structured using a fuzzy-coding technique, and a co-inertia analysis between traits and abundance data was used to interpret functional differences in bromeliad ecosystems. 4. The vegetative traits of A. mertensii depended on seed dispersion by C. femoratus and P. goeldii along a gradient of local conditions. The ant partner selected sets of invertebrates with traits that were best adapted to the bromeliads' morphology, and so the composition of the biological traits of invertebrate phytotelm communities depends on the identity of the ant partner. Biological traits suggest a bottom-up control of community structure in C. femoratus-associated phytotelmata and a greater structuring role for predatory invertebrates in P. goeldii-associated plants. 5. This study presents new information showing that two-species mutualisms affect the functional diversity of a much wider range of organisms. Most biological systems form complex networks where nodes (e. g. species) are more or less closely linked to each other, either directly or indirectly, through intermediate nodes. Our observations provide community-level information about biological interactions and functional diversity, and perspectives for further observations intended to examine whether large-scale changes in interacting species/community structure over broad geographical and anthropogenic gradients affect ecosystem functions.
ISSN: 0269-8463

hal-00817509
https://hal.archives-ouvertes.fr/hal-00817509

Éditeur(s) : HAL CCSD Wiley
Résumé : Over the past three decades, many small-scale floristic studies of white-sand forests across the Amazon basin have been published. Nonetheless, a basin-wide description of both taxonomic and phylogenetic alpha and beta diversity at regional scales has never been achieved. We present a complete floristic analysis of white-sand forests across the Amazon basin including both taxonomic and phylogenetic diversity. We found strong regional differences in the signal of phylogenetic community structure with both overall and regional Net Relatedness Index and Nearest Taxon Index values found to be significantly positive leading to a pattern of phylogenetic clustering. Additionally, we found high taxonomic dissimilarity but low phylogenetic dissimilarity in pairwise community comparisons. These results suggest that recent diversification has played an important role in the assembly of white-sand forests causing geographic neo-endemism patterns at the regional scale.
ISSN: 0006-3606

hal-01532549
https://hal.archives-ouvertes.fr/hal-01532549
DOI : 10.1111/btp.12298
PRODINRA : 353398

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The presence of two regional seismic networks in southeastern France provides us high-quality data to investigate upper mantle flow by measuring the splitting of teleseismic shear waves induced by seismic anisotropy. The 10 three-component and broadband stations installed in Corsica, Provence, and western Alps efficiently complete the geographic coverage of anisotropy measurements performed in southern France using temporary experiments deployed on geodynamic targets such as the Pyrenees and the Massif Central. Teleseismic shear waves (mainly SKS and SKKS) are used to determine the splitting parameters: the fast polarization direction and the delay time. Delay times ranging between 1.0 and 1.5 s have been observed at most sites, but some larger delay times, above 2.0 s, have been observed at some stations, such as in northern Alps or Corsica, suggesting the presence of high strain zones in the upper mantle. The azimuths of the fast split shear waves define a simple and smooth pattern, trending homogeneously WNW–ESE in the Nice area and progressively rotating to NW–SE and to NS for stations located further North in the Alps. This pattern is in continuity with the measurements performed in the southern Massif Central and could be related to a large asthenospheric flow induced by the rotation of the Corsica–Sardinia lithospheric block and the retreat of the Apenninic slab. We show that seismic anisotropy nicely maps the route of the slab from the initial rifting phase along the Gulf of Lion (30–22 Ma) to the drifting of the Corsica–Sardinia lithospheric block accompanied by the creation of new oceanic lithosphere in the Liguro–Provençal basin (22–17 Ma). In the external and internal Alps, the pattern of the azimuth of the fast split waves follows the bend of the alpine arc. We propose that the mantle flow beneath this area could be influenced or perhaps controlled by the Alpine deep penetrative structures and that the Alpine lithospheric roots may have deflected part of the horizontal asthenospheric flow around its southernmost tip.
ISSN: 0040-1951

hal-00109313
https://hal.archives-ouvertes.fr/hal-00109313
https://hal.archives-ouvertes.fr/hal-00109313/document
https://hal.archives-ouvertes.fr/hal-00109313/file/barruol_TGRS_Tphy2004_hal.pdf
DOI : 10.1016/j.tecto.2004.08.002

Éditeur(s) : HAL CCSD Presses universitaires de Bordeaux
Résumé : International audience
Il s'agit de montrer la structuration de l'espace par les villes, de comprendre le rôles des politiques de l’état, de la Régionalisation mais également les dynamiques internes qui renforcent la concentration des pouvoirs urbains.
ISSN: 0373-5834

hal-01174036
https://hal.archives-ouvertes.fr/hal-01174036