Éditeur(s) : HAL CCSD
Résumé : The field campaign on the Sète coast deployed during the winter 2009 was used to understand the hydrodynamics on a double barred beach in the surf zone during storm periods. The large set of measurements collected at several position and depth were also useful to improve the 3D circulation model Symphonie that takes into account the atmospherics and wave forcings. Once implemented on the beach and supplemented with some additional parameterizations concerning the roller effects and the bottom friction, the model was tuned and validated in the surf zone. The role of the different processes was then analysed. Thus, the roller and the bottom friction are of primary importance in the dynamics of the circulation. Thanks to its 3D nature and once associated with a sediment transport model and a morphodynamic model, Symphonie will offer a good representation of the sediment transport.
Coastal Dynamics 2013
Arcachon, France

hal-00855035
https://hal.archives-ouvertes.fr/hal-00855035

Éditeur(s) : HAL CCSD
Résumé : International audience
o abstract
11e Congrès Français de Sédimentologie,
Unknown, Unknown or Invalid Region

hal-01426592
https://hal.archives-ouvertes.fr/hal-01426592

Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Vibrio metoecus is the closest relative of Vibrio cholerae, the causative agent of the potent diarrheal disease cholera. Although the pathogenic potential of this new species is yet to be studied in depth, it has been co-isolated with V. cholerae in coastal waters and found in clinical specimens in the USA. We used these two organisms to investigate the genetic interaction between closely related species in their natural environment. The genomes of twenty V. cholerae and four V. metoecus strains isolated from a brackish coastal pond on the US east coast, as well as four clinical V. metoecus strains were sequenced and compared to reference strains. Whole genome comparison shows 86-87% average nucleotide identity (ANI) in their core genes between the two species. On the other hand, the chromosomal integron, which occupies approximately 3% of their genomes, shows higher conservation in ANI between species than any other region of their genomes. The ANI of 93-94% observed in this region is not significantly greater within than between species, meaning that it does not follow species boundaries. V. metoecus does not encode toxigenic V. cholerae major virulence factors, the cholera toxin and toxin co-regulated pilus. However, some of the pathogenicity islands found in pandemic V. cholerae were either present in the common ancestor it shares with V. metoecus, or acquired by clinical and environmental V. metoecus in partial fragments. The virulence factors of V. cholerae are therefore both more ancient and more widespread than previously believed. There is high interspecies recombination in the core genome, which has been detected in 24% of the single-copy core genes, including genes involved in pathogenicity. V. metoecus was six times more often the recipient of DNA from V. cholerae as it was the donor, indicating a strong bias in the direction of gene transfer in the environment.
ISSN: 1759-6653

Droits : http://creativecommons.org/licenses/by/
hal-01264332
http://hal.upmc.fr/hal-01264332
http://hal.upmc.fr/hal-01264332/document
http://hal.upmc.fr/hal-01264332/file/Genome%20Biol%20Evol-2015-Orata-gbe_evv193.pdf
DOI : 10.1093/gbe/evv193

Éditeur(s) : HAL CCSD
Résumé : Quasi-3D model SHORECIRC simulates circulation on simple nearshore domains. It is modified in order to handle realistic bathymetries : beaches with complex shoreline and/or emerged structures. Added improvements are validated against other models and measurements on various configurations. New SHORECIRC version is then applied to the study of the circulation dynamics of Leucate, a sandy beach of Languedoc- Roussillon (France) with crescentic bars.
Le modèle numérique de circulation quasi-tridimensionnel SHORECIRC, initialement prévu pour fonctionner sur des bathymétries simples, a été modifié afin de pouvoir prendre en compte les caractéristiques complexes des bathymétries réalistes de la zone littorale : trait de côte irrégulier et présence d'objets émergés. Les modifications apportées ont ´été validées par comparaison avec des résultats d'autres modèles numériques et avec des données mesurées sur plusieurs configurations. Enfin, le modèle modifié a été appliqué à l'étude de la dynamique de la circulation sur une plage sableuse à barres en festons (Plage de Leucate, Languedoc-Roussillon, FR).
https://tel.archives-ouvertes.fr/tel-00438713

tel-00438713
https://tel.archives-ouvertes.fr/tel-00438713
https://tel.archives-ouvertes.fr/tel-00438713/document
https://tel.archives-ouvertes.fr/tel-00438713/file/thesebujan.pdf

Éditeur(s) : HAL CCSD Inter Research
Résumé : International audience
The main objective of the VULSACO (VULnerability of SAndy COasts to climate change and anthropic pressure) project was to investigate present day and potential future vulnerability of sandy coasts at the 2030 horizon, i.e. on a time scale related to climate variability. The method, based on a multidisciplinary approach bringing together geologists, geographers, physicists, social psychologists, engineers and stakeholders, was structured around 4 axes: field data analysis; numerical modelling; analysis of governance and stakeholder perceptions; and development of vulnerability indexes. This approach was designed to investigate vulnerability at a local scale and was applied to 4 contrasting beaches located in France: Sète Lido (Mediterranean Sea), Truc Vert and La Tresson beaches (Atlantic Ocean), and Dewulf (English Channel). The results focus on decadal and multi-annual beach trends at the Truc Vert beach site. There is almost no trend in beach volume at Truc Vert beach, although there is a variation in this parameter on a cycle of 2 to 3 yr, with variations related to wave energy and probably to indexes of climate variability. Numerical modelling identified the sensitivity of beach responses to changes in wave height and direction, especially in terms of subtidal morphology and the potential development of shoreline instability. Together with the observed offshore wave angle at the Biscay Buoy, these model results suggest that a potential change in wave angle due to climate variability could significantly modify the bars' morphology. The combination of data analysis and numerical modelling contributed to the development of vulnerability indexes designed for sandy coasts, which take into account climate-dependant variables such as waves. This allowed the differentiation of the sites in terms of vulnerability to erosion: Sète Lido and Truc Vert beach were the most and least vulnerable sites, respectively. These indexes help in identifying the dominant components of beach vulnerability, and provide potential for the study of how anthropogenic factors affect vulnerability. The study of stakeholder perceptions and decision-making with regard to climate-related risk also highlighted potential anthropogenic effects on beach vulnerability, and identified possible site-specific outcomes.
ISSN: 0936-577X

hal-00843946
https://hal-brgm.archives-ouvertes.fr/hal-00843946
DOI : 10.3354/cr01153