Éditeur(s) : HAL CCSD CNRS
Résumé : absent
Programme Environnement Géosphère intertropicale PEGI. Rapport d'activité 1994-1995 au conseil scientifique de PEGI
Paris, France

hal-01032366
https://hal.archives-ouvertes.fr/hal-01032366

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers (IEEE)/Optical Society of America(OSA)
Résumé : International audience
Nanometric displacement measurements by Extrinsic Fiber Fabry-Perot interferometers (EFPI) is extremely susceptible to external environmental changes. Temperature, in particular, has a remarkable influence on the optical power and wavelength of the laser diode in use, in addition to the thermal expansion of the mechanical structure. In this paper we propose an optimization of the EFPI sensor in order to use it for very long-term (more than one year) and for high-precision displacement measurements. For this purpose, a real time and adaptive estimation procedure based on a homodyne technique and a Kalman filter is established. During a sinusoidal laser diode current modulation, the Kalman filter provides a correction of the amplitude drift caused by the resultant optical power modulation and external perturbations. Besides, stationary temperature transfer operators are estimated via experimental measurements to reduce the additive thermal noise induced in the optical phase and mechanical components.
ISSN: 0733-8724

hal-00876339
https://hal.archives-ouvertes.fr/hal-00876339
DOI : 10.1109/JLT.2012.2194476

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project - and avert - future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups - including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - ). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.
ISSN: 2045-7758

hal-01204216
https://hal.archives-ouvertes.fr/hal-01204216
DOI : 10.1002/ece3.1303
PRODINRA : 280886

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Sensitive instruments like strainmeters and tiltmeters are necessary for measuring slowly varying low amplitude Earth deformations. Nonetheless, laser and fibre interferometers are particularly suitable for interrogating such instruments due to their extreme precision and accuracy. In this paper, a practical design of a simple pendulum borehole tiltmeter based on laser fibre interferometric displacement sensors is presented. A prototype instrument has been constructed using welded borosilicate with a pendulum length of 0.85 m resulting in a main resonance frequency of 0.6 Hz. By implementing three coplanar extrinsic fibre Fabry-Perot in-terferometric probes and appropriate signal filtering, our instrument provides tilt measurements that are insensitive to parasitic deformations caused by temperature and pressure variations. This prototype has been installed in an underground facility (Rustrel, France) where results show accurate measurements of Earth strains derived from Earth and ocean tides, local hydro-logic effects, as well as local and remote earthquakes. The large dynamic range and the high sensitivity of this tiltmeter render it an invaluable tool for numerous geophysical applications such as transient fault motion, volcanic strain and reservoir monitoring.
ISSN: 0956-540X

hal-01265967
https://hal.archives-ouvertes.fr/hal-01265967
https://hal.archives-ouvertes.fr/hal-01265967/document
https://hal.archives-ouvertes.fr/hal-01265967/file/HCS1.pdf
DOI : 10.1093/gji/ggv358

Éditeur(s) : HAL CCSD
Résumé : International audience
A fiber interferometer interfaced to 3 geo-mechanical elements is presented for applications in geophysics. The fiber sensor is based on an extrinsic fiber Fabry-Perot interferometer (EFFPI) which incorporates a modulation scheme to lock the interferometer at quadrature and to enable displacement measurements below a quarter of the interrogating wavelength. It operates over a relatively large frequency dynamic of ~500000 with a precision better than 2 nm. The fiber interferometer is next interfaced to a differential hydrostatic long baseline inclinometer, a 3-axis borehole tiltmeter and a single-axis seismometer, respectively. Results obtained demonstrate that the fiber interferometrically-interrogated instruments exhibit performances equivalent to or even surpassing those of the reference instruments employed for comparison during their deployment to an underground test site since March 2012. Keywords—modulation-based extrinsic fiber Fabry-Perot interferometer; fiber optique hydrostatic inclinometer; fiber optique borehole tiltmeter; fiber optique seismometer
IEEE SENSORS 2015
Busan, South Korea

hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963/document
https://hal.archives-ouvertes.fr/hal-01265963/file/HCS3.pdf
DOI : 10.1109/ICSENS.2015.7370316

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
ISSN: 0956-540X

hal-01187132
https://hal.archives-ouvertes.fr/hal-01187132

Éditeur(s) : HAL CCSD
Résumé : International audience
In two swordtail species of the genus Xiphophorus, the onset of puberty has been shown to be modulated at the P locus by sequence polymorphism and gene copy-number variation affecting the type 4 melanocortin hormone receptor Mc4r. The system works through the interaction of two allelic types, one encoding wild type and the other dominant-negative receptors. We have analyzed the structure and evolution of the P locus in the platyfish Xiphophorus maculatus, where as many as nine alleles of P determining the onset of sexual maturity in males and females, fecundity in females, and adult size in males are located on both the X and Y chromosomes in a region linked to the master sex-determining locus. In this species, mc4r has been amplified to up to 10 copies on both the X and Y chromosomes through recent large serial duplications. Subsequently, mc4r paralogues have diverged considerably into many different subtypes. Certain copies have acquired new untranslated regions through genomic rearrangements, and transposable element insertions and other mutations have accumulated in promoter regions, possibly explaining observed deviations from the classical mc4r transcriptional pattern. In the mc4r-coding sequence, in-frame insertions and deletions as well as nonsense and missense mutations have generated a high diversity of Mc4r-predicted proteins. Most of these variants are expressed in embryos, adults, and/or tumors. Functional receptor characterization demonstrated major divergence in pharmacological behavior for Mc4r receptors encoded by different copies of platyfish mc4r, with differences in constitutive activity as well as binding and stimulation by hormones. The high degree of allelic and copy-number variation observed between individuals can explain the high level of polymorphism for sexual maturation, fecundity, and body size in the platyfish: multiple combinations of Mc4r variants with different biochemical properties might interact to modulate the melanocortin signaling that regulates the hypothalamus-pituitary-gonadal axis.
GENETICS

hal-01544912
https://hal.archives-ouvertes.fr/hal-01544912
DOI : 10.1534/genetics.113.155952

Éditeur(s) : HAL CCSD Optical Society of America
Résumé : This Letter describes a dual-amplitude modulation technique incorporated into a double reflection extrinsic-type fiber Fabry-Perot interferometer to measure periodic, nonperiodic as well as quasi-static displacements. The modulation scheme simultaneously maintains the interference signal pair in quadrature and provides a reference signal for displacements inferior to a quarter of the source wavelength. The control and phase demodulation of the interferometer carried out via software enable quasi-real-time measurement and facilitates sensor alignment. The sensor system can be exploited in the low frequency range from 10−3 to ∼500 Hz and has a resolution better than 2.2 nm, targeting applications in geophysics.
ISSN: 0146-9592

hal-00758140
https://hal.archives-ouvertes.fr/hal-00758140
DOI : 10.1364/OL.37.002886