Éditeur(s) : HAL CCSD CNRS
Résumé : absent
Programme Environnement Géosphère intertropicale PEGI. Rapport d'activité 1994-1995 au conseil scientifique de PEGI
Paris, France

hal-01032366
https://hal.archives-ouvertes.fr/hal-01032366

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers (IEEE)/Optical Society of America(OSA)
Résumé : International audience
Nanometric displacement measurements by Extrinsic Fiber Fabry-Perot interferometers (EFPI) is extremely susceptible to external environmental changes. Temperature, in particular, has a remarkable influence on the optical power and wavelength of the laser diode in use, in addition to the thermal expansion of the mechanical structure. In this paper we propose an optimization of the EFPI sensor in order to use it for very long-term (more than one year) and for high-precision displacement measurements. For this purpose, a real time and adaptive estimation procedure based on a homodyne technique and a Kalman filter is established. During a sinusoidal laser diode current modulation, the Kalman filter provides a correction of the amplitude drift caused by the resultant optical power modulation and external perturbations. Besides, stationary temperature transfer operators are estimated via experimental measurements to reduce the additive thermal noise induced in the optical phase and mechanical components.
ISSN: 0733-8724

hal-00876339
https://hal.archives-ouvertes.fr/hal-00876339
DOI : 10.1109/JLT.2012.2194476

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project - and avert - future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups - including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - ). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.
ISSN: 2045-7758

hal-01204216
https://hal.archives-ouvertes.fr/hal-01204216
DOI : 10.1002/ece3.1303
PRODINRA : 280886

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The Nile delta sedimentation constitutes a continuous high resolution (1.6 mm/year) record of Ethiopian African monsoon regime intensity. Multiproxy analyses performed on core MS27PT recovered in hemipelagic Nile sediment margin (<90 km outward of the Rosetta mouth of the Nile) allow the quantification of the Saharan aeolian dust and the Blue/White Nile River suspended matter frequency fluctuations during the last 21 cal. ka BP. The radiogenic Sr and Nd isotopes, clay mineralogy, bulk elemental composition and palynological analyses reveal large changes in source components, oscillating between a dominant aeolian Saharan contribution during the LGM and the Late Holocene (~4 to 2 cal. ka BP), a dominant Blue/Atbara Nile River contribution during the early Holocene (15 to 8.4 cal. ka BP) and a probable White Nile River contribution during the Middle Holocene (8.4 to 4 cal. ka BP). The following main features are highlighted: 1. The rapid shift from the LGM arid conditions to the African Humid Period (AHP) started at about 15 cal. ka BP. AHP extends until 8.4 cal. ka BP, and we suggest that the Ethiopian African Monsoon maximum between 12 and 8 cal. ka BP is responsible for a larger Blue/Atbara Nile sediment load and freshwater input into the Eastern Mediterranean Sea. 2. The transition between the AHP and the arid Late Holocene is gradual and occurs in two main phases between 8.4 and 6.5 cal. ka BP and 6.5 to 3.2 cal. ka BP. We suggest that the main rain belt shifted southward from 8.4 to ~4 cal. ka BP and was responsible for progressively reduced sediment load and freshwater input into the eastern Mediterranean Sea. 3. The aridification along the Nile catchments occurred from ~4 to 2 cal. ka BP. A dry period, which culminates at 3.2 cal. ka BP, and seems to coincide with a re-establishment of increased oceanic primary productivity in the western Mediterranean Sea. We postulate that the decrease in thermo-haline water Mediterranean circulation could be part of a response to huge volumes of fresh-water delivered principally by the Nile River from 12 to 8.4 cal. ka BP in the eastern Mediterranean. We propose that the large hydrological change in Ethiopian latitude could be a trigger for the 8.2 ka cooling event recorded in high latitude. Revel R., Colin C., Bernasconi S., Combourieu-Nebout N., Ducassou E., Grousset F.E., Rolland Y., Migeon S., Brunet P., Zhaa Y., Bosch D., Mascle J.,. "21,000 years of Ethiopian African moonsoon variability recorded in sediments of the western Nile deep sea fan", Regional Environmental Change,
ISSN: 1436-3798

hal-00836300
https://hal.archives-ouvertes.fr/hal-00836300

Éditeur(s) : HAL CCSD Himalayan Association Advance Science
Résumé : The Himalayas and the Tibetan Plateau are considered as the classical case of continental collision.
ISSN: 1727-5210

hal-00854401
https://hal.archives-ouvertes.fr/hal-00854401
DOI : 10.3126/hjs.v5i7.1267

Éditeur(s) : HAL CCSD
Résumé : International audience
A fiber interferometer interfaced to 3 geo-mechanical elements is presented for applications in geophysics. The fiber sensor is based on an extrinsic fiber Fabry-Perot interferometer (EFFPI) which incorporates a modulation scheme to lock the interferometer at quadrature and to enable displacement measurements below a quarter of the interrogating wavelength. It operates over a relatively large frequency dynamic of ~500000 with a precision better than 2 nm. The fiber interferometer is next interfaced to a differential hydrostatic long baseline inclinometer, a 3-axis borehole tiltmeter and a single-axis seismometer, respectively. Results obtained demonstrate that the fiber interferometrically-interrogated instruments exhibit performances equivalent to or even surpassing those of the reference instruments employed for comparison during their deployment to an underground test site since March 2012. Keywords—modulation-based extrinsic fiber Fabry-Perot interferometer; fiber optique hydrostatic inclinometer; fiber optique borehole tiltmeter; fiber optique seismometer
IEEE SENSORS 2015
Busan, South Korea

hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963/document
https://hal.archives-ouvertes.fr/hal-01265963/file/HCS3.pdf
DOI : 10.1109/ICSENS.2015.7370316

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
ISSN: 0956-540X

hal-01187132
https://hal.archives-ouvertes.fr/hal-01187132

Éditeur(s) : HAL CCSD National Academy of Sciences
Résumé : International audience
ISSN: 0027-8424

halsde-00335837
https://hal.archives-ouvertes.fr/halsde-00335837
DOI : 10.1073/pnas.0708015105

Éditeur(s) : HAL CCSD Optical Society of America
Résumé : This Letter describes a dual-amplitude modulation technique incorporated into a double reflection extrinsic-type fiber Fabry-Perot interferometer to measure periodic, nonperiodic as well as quasi-static displacements. The modulation scheme simultaneously maintains the interference signal pair in quadrature and provides a reference signal for displacements inferior to a quarter of the source wavelength. The control and phase demodulation of the interferometer carried out via software enable quasi-real-time measurement and facilitates sensor alignment. The sensor system can be exploited in the low frequency range from 10−3 to ∼500 Hz and has a resolution better than 2.2 nm, targeting applications in geophysics.
ISSN: 0146-9592

hal-00758140
https://hal.archives-ouvertes.fr/hal-00758140
DOI : 10.1364/OL.37.002886

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The high proportion of crystallized apatite forming the bones and teeth should theoretically allow the use of fission track analysis to date vertebrate fossils when burying of the fossiliferous series did not subject them to temperatures exceeding 60 degrees C. However several major obstacles arise such as the complexity of fossils' internal structures, diagenetic modifications and substitutions of the hydroxyapatite by other minerals, and massive U uptake or loss during diagenesis. In this work, those various problems are addressed combining optical microscope observation of the fossils, a systematic fission track analysis of the best samples, alpha and gamma spectrometry and Secondary Ion Mass Spectrometry. Even if the problems caused by internal structures and mineral substitutions can be solved, U movements in and out of the fossils are generally too complex to allow fission track analysis dating of the fossils.
ISSN: 0009-2541

hal-00411880
https://hal.archives-ouvertes.fr/hal-00411880
DOI : 10.1016/j.chemgeo.2007.10.009

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The ‘International Intercomparison Exercise of fCO₂ Systems’ was carried out in 1996 during the R/V Meteor Cruise 36/1 from Bermuda/UK to Gran Canaria/Spain. Nine groups from six countries (Australia, Denmark, France, Germany, Japan, USA) participated in this exercise, bringing together 15 participants with seven underway fugacity of carbon dioxide (fCO₂) systems, one discrete fCO₂ system, and two underway pH systems, as well as systems for discrete measurement of total alkalinity and total dissolved inorganic carbon. Here, we compare surface seawater fCO₂ measured synchronously by all participating instruments. A common infrastructure (seawater and calibration gas supply), different quality checks (performance of calibration procedures for CO2, temperature measurements) and a common procedure for calculation of final fCO₂ were provided to reduce the largest possible amount of controllable sources of error. The results show that under such conditions underway measurements of the fCO₂ in surface seawater and overlying air can be made to a high degree of agreement (±1 μatm) with a variety of possible equilibrator and system designs. Also, discrete fCO₂ measurements can be made in good agreement (±3 μatm) with underway fCO₂ data sets. However, even well-designed systems, which are operated without any obvious sign of malfunction, can show significant differences of the order of 10 μatm. Based on our results, no “best choice” for the type of the equilibrator nor specifics on its dimensions and flow rates of seawater and air can be made in regard to the achievable accuracy of the fCO₂ system. Measurements of equilibrator temperature do not seem to be made with the required accuracy resulting in significant errors in fCO₂ results. Calculation of fCO₂ from high-quality total dissolved inorganic carbon (CT) and total alkalinity (AT) measurements does not yield results comparable in accuracy and precision to fCO₂ measurements.
ISSN: 0304-4203

hal-01245605
https://hal.archives-ouvertes.fr/hal-01245605
DOI : 10.1016/S0304-4203(00)00080-3