Éditeur(s) : HAL CCSD
Résumé : International audience
This article describes a previously unreported mutation at position 210 (C210T) of the mitochondrial large subunit ribosomal RNA (mtLSUrRNA) gene of Pneumocystis jirovecii, which led to a false-negative result of a real-time polymerase chain reaction (PCR) assay. Since the aforementioned real-time PCR assay is widely used in France, a French multicenter study was conducted to estimate the mutation frequency and its potential impact on the routine diagnosis of Pneumocystis pneumonia (PCP). Through analysis of data obtained from eight centers, the mutation frequency was estimated at 0.28%. This low frequency should not call into question the routine use of this PCR assay. Nonetheless, the occurrence of the false-negative PCR result provides arguments for maintaining microscopic techniques combined to PCR assays to achieve PCP diagnosis.
Medical Mycology

hal-01477200
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01477200
DOI : 10.1093/mmy/myw051
PUBMED : 27489302

Éditeur(s) : HAL CCSD Centers for Disease Control and Prevention
Résumé : International audience
To determine when risk for Buruli ulcer is highest, we examined seasonal patterns in a highly disease-endemic area of Cameroon during 2002-2012. Cases peaked in March, suggesting that risk is highest during the high rainy season. During and after this season, populations should increase protective behaviors, and case detection efforts should be intensified.
ISSN: 1080-6040

Droits : http://creativecommons.org/licenses/by-nc-nd/
hal-01307147
https://hal-amu.archives-ouvertes.fr/hal-01307147
https://hal-amu.archives-ouvertes.fr/hal-01307147/document
https://hal-amu.archives-ouvertes.fr/hal-01307147/file/14-1336.pdf
DOI : 10.3201/eid2108.141336

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
ISSN: 1198-743X

hal-01118417
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118417
DOI : 10.1016/j.cmi.2014.11.027
PUBMED : 25630459

Éditeur(s) : ICCAT, Madrid (Spain)
Résumé : Cette étude intègre simultanément les données de la pêcherie palangrière de l'Atlantique Nord Central (prises annuelles en nombre par classes d'âge à partir des échantillonnages de la pêcherie japonaise) et les données de la pêcherie de surface franco-espagnole de l'Atlantique Nord-Est (prises annuelles en nombre par classes d'âge à partir des échantillonnages de la pêcherie française). L'analyse des cohortes sur ces données conduit à des estimations de Fi et de tailles de cohortes au recrutement et la sortie de la pêche de surface, puis au recrutement de la pêcherie palangrière. Le recoupement et le recouvrement de ces résultats permettent de construire une série de Fi et, à partir des données de Mi extraites d'autres études, d'appliquer les modèles classiques de rendement pondéral par recrue. L'analyse est menée parallèlement sur le rendement pondéral par recrue et la fécondité du stock. Le développement et l'emploi de modèles et programmes originaux de gestion tenant des divers techniques et engins de pêche (multi-arts de pêche, "multi-gear") permettent de tirer des conclusions sur les effets respectifs des deux pêcheries : palangre sur les adultes et surface sur les jeunes. [OCR NON CONTRÔLE]
ICCAT/CICTA Recueil de Documents Scientifiques (ICCAT, Madrid (Spain)), 1974 , Vol. 4 , P. 619-651

Droits : ICCAT, Madrid (Spain)
http://archimer.ifremer.fr/doc/1974/publication-5469.pdf
http://archimer.ifremer.fr/doc/00000/5469/

Éditeur(s) : HAL CCSD Oxford University Press
Résumé : International audience
Chronic rhinosinusitis (CRS) rank second at chronic inflammatory diseases in industrialized countries and are an important public health concern. Diagnosis relies on a set of arguments including clinical signs, imaging, histopathologic and mycological analyses of sinus specimens, collected during nasal endoscopy. The sensitivity of fungal cultures is reported to be poor, even when direct examination is positive, thus the epidemiology of fungal chronic sinusitis is ill-known. This study evaluated the sensitivity of molecular diagnosis in 70 consecutive samples (61 patients with CRS) analysed at the University Hospital of Rennes during a 3-year period. DNA detection was performed using a conventional PCR method targeting the ITS1/ITS2 sequence and the resulting amplification products were sequenced. Fungal CRS was proven in 42 patients (69%), of which only 20 (48%) had a positive culture. 37/42 (88%) patients were diagnosed with a fungus ball, 3 with allergic fungal CRS and 2 with undetermined fungal CRS. PCR was positive in all 42 cases and direct sequencing allowed to identify fungi in all cases but one, and detected multiple infection in 3. Aspergillus fumigatus was present in 69% of patients; Cladosporium cladosporoides in 9.5%, Scedosporium sp., A. nidulans and A. flavus in 7% each. In 2/19 patients with negative direct examination, sequencing analysis revealed the presence of Capnobotryella sp. and C. cladosporoides, in clinical settings compatible with fungal sinusitis. In conclusion, ITS1/ITS2 PCR had a twice better sensitivity than culture, and combined sequencing provides accurate epidemiological data on fungal CRS.
ISSN: 1369-3786

hal-01383632
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632/file/Contribution%20of%20molecular%20tools%20for%20the%20diagnosis.pdf
DOI : 10.1093/mmy/myw041