Éditeur(s) : INRA : Institut National de la Recherche Agronomique CIRAD : Centre de Coopération Internationale en Recherche Agronomique pour le Développement Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Acknowledging the contribution of agriculture to global changes and its negative impacts on the environment, it is now seen as unavoidable for it to participate to the ecological transition. This research aims to understand the performativity of legal texts. This performativity does not only reveal the institutions? approach of the model to implement. It also aims to change, in the meantime, the reality (Ambroise et al., 2015). The objective of this research is to stress the importance of concepts? definitions in policies implementation when agricultural system reframing is at stake, and to highlight an uncertain use of words may produce. However, little attention is given to the choice of terms concerning the definition of a greener agriculture in official texts: terms are often mixed up without any clarification. Applying content analysis to official documents, we provide an analytical grid to grasp in what extent the unclear use of words and what they namely designate, lead to ambiguous policies eluding aspects of the concept of agroecology underlined by researchers or associations. We also shed light on the local appropriation process of the concept and its specification in the French Indies. Reconnaissant la contribution de l'agriculture aux changements globaux et à ses impacts négatifs sur l'environnement, on le voit maintenant comme inévitable pour qu'il participe à la transition écologique. Objectifs de ces recherches pour comprendre le performativity des textes juridiques. Ce performativity indique non seulement l'approche des établissements du modèle à l'instrument. Il vise également à changer, dans le même temps, la réalité (Ambroise et autres, 2015). L'objectif de cette recherche est de souligner l'importance des définitions des concepts dans l'exécution de politiques quand le système agricole reframing est en jeu, et accentuer une utilisation incertaine des mots peut produire. Cependant, peu d'attention est accordée au choix des termes au sujet de la définition d'une agriculture plus verte en textes officiels : des termes sont souvent mélangés sans n'importe quelle clarification. S'appliquant à l'analyse du contenu aux documents officiels, nous fournissons une grille analytique à la prise dans quelle ampleur l'utilisation peu claire des mots et ce qu'ils à savoir indiquent, mènent aux politiques ambiguës éludant des aspects du concept de l'agroécologie souligné par des chercheurs ou des associations. Nous avons également jeté la lumière sur le processus local d'appropriation du concept et de ses spécifications dans les Antilles françaises.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16255
V16255

Éditeur(s) : CRPLC : Centre de Recherche sur les Pouvoirs Locaux dans la Caraïbe
Extrait de : "Les entités infra-étatiques et les organisations de coopération et d'intégration régionales" : colloque international, les 25 et 26 mars 2013. Université des Antilles et de la Guyane
Description : "The Americas have a rich history of regional cooperation. In the Caribbean Basin, however, mechanisms for regional cooperation and/or integration have emerged which have sought to transcend the issues of legal status and to address common questions of socio-economic development, democratic institutions and functions. Three regional grouping fall into this category: the Caribbean Community (1937), the Organization of Eastern Caribbean States (1981) and the Association of Caribbean States (1994). This paper will do a comparative survey and analysis of the three organizations. The second part of the paper will examine the specific areas of greatest participation by the non-independent members in the activities of specific regional organizations. The conclusion addresses contemporary themes such as the dynamics of political/constitutional evolution which affect the membership of non-independent territories."
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V13127
V13127

Éditeur(s) : Kluwer
Résumé : We reviewed the literature concerning fish aggregation devices (FADs) to determine areas of relative research deficiency. Using specific searches of the Aquatic Sciences and Fisheries Abstracts ( ASFA) database from 1978 to December 2003 and a classical search of the pre-1978 literature, we collected 407 references on FADs. Publications before 1980 were predominantly peer-reviewed, although non-peer reviewed literature has dominated since 1980, due to the numerous technical reports produced as FADs became more widely used in artisinal and large-scale industrial. sheries in the 1980s. Most studies of the ecology of FAD-associated fish were descriptive, with few mensurative experimental studies and even fewer manipulative experimental studies that tested specific hypotheses, due to inherent difficulties in working in the open ocean on objects that are temporary in space and time. Research on the ecology of FAD-associated fish has focused on moored FADs, despite the major FAD-based. sheries being around drifting FADs. Publications presenting information on moored FADs outnumbered papers on drifting FADs by a ratio of 3.5: 1. We recommend that greater emphasis be placed by. sheries scientists and funding agencies on researching drifting FADs to provide better information for management of large-scale FAD-based industrial. sheries. Future research should focus on determining the patterns of use of drifting FADs by pelagic species, the underlying sensory processes of attraction and the ecological consequences for individual fish stocks and the wider pelagic ecosystem of the use of FADs as. sheries enhancement tools.
Reviews in Fish Biology and Fisheries (0960-3166) (Kluwer), 2004-03 , Vol. 14 , N. 1 , P. 21-42

Droits : 2004 Springer
http://archimer.ifremer.fr/doc/2004/publication-721.pdf
DOI:10.1007/s11160-004-3151-x
http://archimer.ifremer.fr/doc/00000/721/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
STUDY QUESTION: Is prenatal exposure to persistent organic pollutants (POPs) associated with variations of sex hormone levels in cord blood? SUMMARY ANSWER: Prenatal exposure to a number of POPs is associated with a disruption of hormone levels in cord blood, with sex specificities. WHAT IS KNOWN ALREADY: Epidemiological studies have reported disorders of reproductive health, in relation with POPs exposure during early life and the endocrine disruption properties of these chemicals have been suggested as possible mechanisms. STUDY DESIGN, SIZE, DURATION: A subset of 282 mother-child pairs was selected from the prospective population-based PELAGIE birth cohort (n = 3421, 2002-2006, Brittany, France). Pregnant women were recruited before 19 weeks of gestation and followed until delivery. PARTICIPANTS/MATERIALS, SETTING, METHODS: Sex hormone levels including sex hormone-binding globulin (SHBG), estradiol (E2), total testosterone (T), free testosterone (fT = T/SHBG) and the aromatase index (AI = T/E2) were measured in 282 cord blood samples. Anti-Müllerian hormone (AMH) was measured in male newborns only. Pesticide concentrations of α-endosulfan, β-hexachlorocyclohexane (β-HCH), γ-HCH, dieldrin, pp'-dichlorodiphenyldichloroethylene (p,p'-DDE), hexachlorobenzene (HCB), heptachlor epoxide (HCE), as well as PCBs (congeners 153, 187 and the sum of anti-estrogenic PCBs 118, 138, and 170) and decabrominated diphenyl ether (BDE209) were also measured in cord blood. Associations between sex hormones and POPs exposure were explored using multiple linear regressions adjusted for potential confounders. MAIN RESULTS AND THE ROLE OF CHANCE: High PCB levels were associated with an increase of SHBG (P-trend extless 0.01) and AMH (P-trend extless 0.05) and a decrease of fT (P-trend extless 0.05) and AI (P-trend extless 0.01). High pesticide levels, particularly α-endosulfan and HCE, were associated with an increase of SHBG (P extless 0.05) and E2 (P extless 0.01) and a decrease of fT (P extless 0.05) and AI (P extless 0.01). Several of these associations were stronger, or specific, among male or female newborns. The associations were not altered in the sensitivity analyses. LIMITATIONS, REASONS FOR CAUTION: The study population was of relatively small sample size, and some compounds rarely detected in cord blood. The high level of correlation between POPs makes it difficult to identify the most contributing POPs. Hormone measurements were performed at birth (in cord blood) and may not adequately represent the infant endocrine system. Multiple statistical testing may have led to false-positive associations. WIDER IMPLICATIONS OF THE FINDINGS: Our results are in discordance with those reported in the only published study of the kind but in accordance with studies about prenatal exposure to other endocrine disruptors such as phthalates. These findings may help understanding the pathways involved in adverse reproductive outcomes associated with POPs exposure. STUDY FUNDING/COMPETING INTERESTS: The PELAGIE cohort is funded by Inserm, French Ministry of Health, French Ministry of Labor, InVS, ANR, ANSES, and French Ministry of Ecology. None of the authors has any competing interest to declare
ISSN: 0268-1161

hal-01220641
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01220641
DOI : 10.1093/humrep/dev260
PUBMED : 26493407

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
BACKGROUND: Mammalian spermatogenesis is a process that involves a complex expression program in both somatic and germ cells present in the male gonad. A number of studies have attempted to define the transcriptome of male meiosis and gametogenesis in rodents and primates. Few human transcripts, however, have been associated with testicular somatic cells and germ cells at different post-natal developmental stages and little is known about their level of germline-specificity compared with non-testicular tissues. METHODS: We quantified human transcripts using GeneChips and a total of 47 biopsies from prepubertal children diagnosed with undescended testis, infertile adult patients whose spermatogenesis is arrested at consecutive stages and fertile control individuals. These results were integrated with data from enriched normal germ cells, non-testicular expression data, phenotype information, predicted regulatory DNA-binding motifs and interactome data. RESULTS: Among 3580 genes for which we found differential transcript concentrations in somatic and germ cells present in human testis, 933 were undetectable in 45 embryonic and adult non-testicular tissues, including many that were corroborated at protein level by published gene annotation data and histological high-throughput protein immunodetection assays. Using motif enrichment analyses, we identified regulatory promoter elements likely involved in germline development. Finally, we constructed a regulatory disease network for human fertility by integrating expression signals, interactome information, phenotypes and functional annotation data. CONCLUSIONS: Our results provide broad insight into the post-natal human testicular transcriptome at the level of cell populations and in a global somatic tissular context. Furthermore, they yield clues for genetic causes of male infertility and will facilitate the identification of novel cancer/testis genes as targets for cancer immunotherapies.
ISSN: 0268-1161

hal-00877243
https://hal.archives-ouvertes.fr/hal-00877243
DOI : 10.1093/humrep/des301
PUBMED : 22926843

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Sur fond de crise du tourisme au Nord, de la globalisation de l’économie et de l’accélération des mobilités, une évolution des formes de développement touristiques semble à l’œuvre dans les confins géographiques. Dans certains territoires touristiques du fait de conflits dans l’usage des ressources naturelles, des pratiques récréatives alternatives émergent qui combinent une logique économique avec des préoccupations socio-environnementales.Notre article analyse l’apparition du tourisme scientifique dans la région « non-touristique » de Aysén, en Patagonie chilienne. Des acteurs d’un territoire se mobilisent selon des pôles culturels et des axes thématiques autour de projets pilotes, de recherche expérientielle et de médiations scientifiques innovantes. Sur ce front pionnier, un réseau informel d’acteurs coordonne ses actions pour aborder les problématiques sociales et environnementales de leur territoire. Opérateurs et prestataires pour le tourisme scientifique créent de manière participative une offre originale. Un système touristique alternatif, axé sur la protection de l’environnement, de la culture et des dynamiques sociales de la communauté d’accueil, favorise l’acquisition et le partage de savoirs entre scientifiques, acteurs locaux et visiteurs.Le tourisme scientifique s’inscrit-il dans une évolution globale des pratiques touristiques ? En proposant de dépasser les frontières, entre activités récréatives et le travail, de lieux de vie et de loisir, il apparaît comme l’expression d’un « après-tourisme ». L’hybridation des pratiques, une approche scientifique associée à l’esprit de la découverte inhérent au voyage, semble pouvoir relever des défis sociétaux liés à l’essor d’un tourisme globalisé. Alors que le tourisme est pensé depuis longtemps en termes de transfert de compétences, de modèles et d’ingénierie du Nord vers le Sud, une périphérie propose de nouveaux cadres de pensée, d’action et de participation qui renouvellent le sens du voyage.
In the context of a tourism crisis in the north, a globalized economy and an increase of mobility, a change in the forms of tourism development seems to occur in peripheral areas. In some tourism areas and due to conflicts over the use of natural resources, alternative recreational practices arise that combine economic needs and socio-environmental concerns.Our article analyzes the appearance of scientific tourism in the "non-tourist" region of Aysén, in Chilean Patagonia. Actors of a territory unite according to specific cultural poles and thematic axes through experiential research and innovative scientific mediation pilot projects. On this pioneer front, an informal network of stakeholders coordinates its actions to address the social and environmental issues of their territory. Operators and service providers for scientific tourism create an innovative offer in a participatory process. An alternative tourism system, focused on protecting the environment, the culture and social dynamics of the host community, promotes the acquisition and sharing of knowledge between scientists, local actors and visitors.Is scientific tourism part of a global evolution of tourism practices? By proposing to go beyond established boundaries, of recreational activities and work, everyday places and leisure areas, it appears as the expression of an “After-Tourism”. The hybridization of practices, a scientific approach associated with the spirit of the discovery inherent of the travel experience, seems to respond to the challenges of the community confronted to the rise of a globalized tourism. While tourism has always been thought of in terms of transfer of skills, models and engineering from the North to the South, a periphery offers new frameworks of thought, action and participation that renew the meaning of travel.
En un escenario de crisis del turismo en los países desarrollados, de la globalización de la economía y del incremento de las movilidades, una evolución de las formas de desarrollo del turismo parece estar en marcha en los confines geográficos. En ciertos territorios turísticos, debido a los conflictos de uso de los recursos naturales, prácticas recreativas alternativas surgen que combinan una lógica económica con preocupaciones socio-ambientales.El presente artículo analiza el surgimiento del turismo científico en la región “no-turística” de Aysén en la Patagonia chilena. Actores del territorio se unen según polos y temáticas científicas, a través de proyectos pilotos, de investigación experiencial y mediaciones científicas innovadoras. En este frente pionero, una red informal se organiza para abordar las problemáticas sociales y ambientales de su territorio. Operadores y proveedores de servicios para el turismo científico crean de manera participativa una oferta novedosa. Un sistema turístico alternativo, basado en el cuidado del medio ambiente, de la cultura y de las dinámicas sociales del comunidad de acogida, favorece la adquisición y el intercambio de conocimientos entre científicos, actores locales y visitantes. ¿Será la aparición del turismo científico la expresión de una evolución global de las practicas turísticas? Al invitar a que sean sobrepasadas las fronteras, entre actividades recreativas y el trabajo, lugares de vida y sitios de esparcimiento, este se presenta como un “Pos-Turismo”. La hibridación de las prácticas, una aproximación científica asociada al espíritu de descubrimiento inherente del viaje, parece poder resolver los desafíos de nuestras sociedades vinculados al auge de un turismo globalizado. Cuando el turismo suele ser pensado desde hace mucho, como un proceso de transferencia de capacidades, de modelos y de ingenierías, del Norte hacia el Sur, una periferia propone nuevos marcos conceptuales, de acción y de participación, que renuevan el sentido del viaje.
Patagonie

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.11169
http://journals.openedition.org/etudescaribeennes/11169

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
EXOSC10 is a catalytic subunit of the exosome that processes biologically active transcripts, degrades aberrant mRNAs and targets certain long non-coding RNAs (lncRNAs). The yeast orthologue Rrp6 is required for efficient growth and gametogenesis, and becomes unstable during meiosis. However, nothing is known about the localization, stability and function of EXOSC10 in the rodent male germline. We detect the protein in nucleoli and the cytoplasm of mitotic and meiotic germ cells, and find that it transiently associates with the XY body, a structure targeted by meiotic sex chromosome inactivation (MSCI). Finally, EXOSC10 becomes unstable at later stages of gamete development. To determine Exosc10's meiotic function, we inactivated the gene specifically in male germ cells using cre recombinase controlled by Stra8 or Ddx4/Vasa promoters. Mutant mice have small testes, show impaired germ cell differentiation and are subfertile. Our results demonstrate that EXOSC10 is post-translationally regulated in germ cells, associate the protein with epigenetic chromosome silencing, and reveal its essential role in germ cell growth and development.
ISSN: 2045-2322

hal-01647082
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01647082
DOI : 10.1038/s41598-017-14643-y
PUBMED : 29118343

Éditeur(s) : Université de Paris 6 – Pierre et Marie Curie
Résumé : Since 1997, a new pathology seasonally occurs in new caledonian shrimp farms during the warm season and was named Summer Syndrome. Diseased Litopenaeus stylirostris shrimp suffer from a septicemic vibriosis which was attributed to V. nigripulchritudo. Preliminary studies based on a collection of V. nigripulchritudo strains have brought to light different virulence levels according to experimental infections results; three virulence statuses were defined: highly (HP), moderately (MP) and non pathogenic (NP). The aim of this work was to genetically characterize virulent V. nigripulchritudo strains. In a first step the genetic diversity of 58 V. nigripulchritudo strains was analyzed by MLST and AP-PCR, revealing a cluster of HP and MP strains, characterized by a low genetic variability and that includes all Summer Syndrome-associated isolates. This confirms the emergence of one cluster of pathogenic V. nigripulchritudo simultaneously with the emergence of the Summer Syndrome ; in a second step, 368 genetic markers of virulence were identified by a Suppressive Subtractive Hybridization performed between the genomes of a HP strain and a genetically close, NP isolate; the distribution of the screened SSH fragments was studied in 58 V. nigripulchritudo isolates by macro-array: 78 DNA fragments were selected, allowing to characterize clusters identified and pathogenic statuses; 13 are specific of the HP strains involved in Summer Syndrome. Interestingly, 10 of these markers are carried by a plasmid pSFn1 that contains sequences highly similar to those of a plasmid pAK1, detected in Vibrio shilonii, a coral pathogen. The origin and consequences of this plasmid acquisition are discussed.
Depuis 1997, les élevages de crevettes en Nouvelle-Calédonie sont confrontés à une nouvelle maladie, le Syndrome d'été, une vibriose septicémique dont l'agent étiologique est Vibrio nigripulchritudo. Les résultats d'infection expérimentale sur une collection de souches, ont montré l'existence de trois pathotypes distincts : hautement (HP), moyennement (MP) et non pathogène (NP). L'étude du polymorphisme génétique de 58 souches par typage moléculaire en MLST et AP-PCR, a mis en évidence un groupe phylogénétique particulier caractérisé par un très faible degré de variabilité génétique (confirmant l'émergence de ce groupe en parallèle à l'émergence du Syndrome d'été) et constitué uniquement de souches HP (dont toutes celles associées au Syndromed'été) et de souches MP. Afin d'identifier des marqueurs génétiques de la virulence des souches responsables du Syndrome d'été, et parmi ces marqueurs des gènes codant potentiellement pour des effecteurs de la virulence, une approche soustractive par SSH a été développée entre une souche HP de type Syndrome d'été et une souche NP : 368 marqueurs génétiques ont ainsi été mis en évidence ; la distribution de ces marqueurs a été étudiée chez les 58 souches de la collection par une approche en macroarray : 78 marqueurs ont été sélectionnés, qui permettent de caractériser les différents groupes phylogénétiques et les différents pathotypes, dont 13 fragments spécifiques des souches HP type Syndrome d'été. Parmi ces 13 fragments, 10 ont été localisés sur le plasmide pSFn1 qui a été entièrement séquencé. Ce même plasmide a été purifié uniquement des souches HP de type Syndrome d'été. Par ailleurs, une très forte homologie a été mise en évidence entre pSFn1 et pAK1, un autre plasmide également séquencé et retrouvé chez la souche V. shilonii AK1, responsable du blanchiment du corail Oculina patagonica en Méditerranée. Ces résultats ont ouvert la discussion sur le rôle de pSFn1 dans la virulence de V. nigripulchritudo.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-3906.pdf
http://archimer.ifremer.fr/doc/00000/3906/

Éditeur(s) : Wiley-blackwell
Résumé : 1. Approximately 300 pelagic fish species naturally aggregate around floating objects (FOBs) at the surface of the oceans. Currently, more than 50% of the world catch of tropical tuna comes from the industrial tuna fisheries around drifting FOBs. Greater understanding of the complex decision-making processes leading to this aggregation pattern and the impact of the massive release of artificial FOBs by fishermen on the spatial distribution and management of tuna is needed. 2. We analyse how the interplay between social (relationships between individuals) and non-social (responses to the environment) behaviours may affect the spatial distribution of a population in a multi-FOB environment. Taking the example of tropical tunas associating with FOBs and using differential equations and stochastic simulations, we examine how, when increasing the number of FOBs, fish aggregation dynamics and the distribution of the population among patches are affected by the population size, level of sociality and the natural retentive and/or attractive forces of FOBs on individual tuna. 3. Our model predicts that, depending on the species' level of sociality, fish will be scattered among FOBs or aggregated around a single FOB based on the number of FOBs deployed in a homogeneous oceanic region. 4. For social species, we demonstrated that the total fish catch is reduced with increasing FOBs number. Indeed, for each size of population, there are a number of FOBs minimizing the total population of fish associated with FOBs and another number of FOBs maximizing the total population of associated fish. 5. Synthesis and applications. In terms of fisheries management, the total catch volume is directly linked to the total number of floating objects (FOBs) for non-social species, and any limit on the number of sets would then result in a limit on the total catch. For social species (e.g. tuna), however, increasing the number of FOBs does not necessarily lead to an increase in the total catch, which is a non-intuitive result. Indeed, our model shows that, for specific values of the parameters, deploying a greater number of FOBs in the water (all other parameters being constant) does not necessarily help fishermen to catch more tuna, but does increase the level of fishing effort and bycatch.
Journal Of Applied Ecology (0021-8901) (Wiley-blackwell), 2013-10 , Vol. 50 , N. 5 , P. 1081-1092

Droits : 2013 The Authors. Journal of Applied Ecology, 2013 British Ecological Society
http://archimer.ifremer.fr/doc/00151/26275/24439.pdf
DOI:10.1111/1365-2664.12140
http://archimer.ifremer.fr/doc/00151/26275/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
AbstractBackground The intensive use of chlordecone (an organochlorine insecticide) in the French West Indies until 1993 resulted in a long-term soil and water contamination. Chlordecone has known hormonal properties and exposure through contaminated food during critical periods of development (gestation and early infancy) may affect growth. Objectives We aimed to assess the impact of prenatal and postnatal exposure to chlordecone on the growth of children from the TIMOUN mother–child cohort. Methods Chlordecone was determined in cord plasma at birth (N=222) and in breast milk samples (at 3 months). Dietary chlordecone intake was estimated at 7 and 18 months, with food-frequency questionnaires and food-specific contamination data. Anthropometric measurements were taken at the 3-, 7- and 18-month visits and measurements reported in the infants' health records were noted. Structured Jenss–Bayley growth models were fitted to individual height and weight growth trajectories. The impact of exposure on growth curve parameters was estimated directly with adjusted mixed non-linear models. Weight, height and body mass index (BMI), and instantaneous height and weight growth velocities at specific ages were also analyzed relative to exposure. Results Chlordecone in cord blood was associated with a higher BMI in boys at 3 months, due to greater weight and lower height, and in girls at 8 and 18 months, mostly due to lower height. Postnatal exposure was associated with lower height, weight and BMI at 3, 8 and 18 months, particularly in girls. Conclusion Chlordecone exposure may affect growth trajectories in children aged 0 to 18 months
ISSN: 0013-9351

hal-01169790
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169790
DOI : 10.1016/j.envres.2015.06.023
PUBMED : 26133809

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Myosin II (or Myosin Heavy Chain II, MHCII) is a family of molecular motors involved in the contractile activity of animal muscle cells but also in various other cellular processes in non-muscle cells. Previous phylogenetic analyses of bilaterian MHCII genes identified two main clades associated respectively with smooth/non-muscle cells (MHCIIa) and striated muscle cells (MHCIIb). Muscle cells are generally thought to have originated only once in ancient animal history, and decisive insights about their early evolution are expected to come from expression studies of Myosin II genes in the two non-bilaterian phyla that possess muscles, the Cnidaria and Ctenophora. Results: We have uncovered three MHCII paralogues in the ctenophore species Pleurobrachia pileus. Phylogenetic analyses indicate that the MHCIIa /MHCIIb duplication is more ancient than the divergence between extant metazoan lineages. The ctenophore MHCIIa gene (PpiMHCIIa) has an expression pattern akin to that of ``stem cell markers'' (Piwi, Vasa...) and is expressed in proliferating cells. We identified two MHCIIb genes that originated from a ctenophore-specific duplication. PpiMHCIIb1 represents the exclusively muscular form of myosin II in ctenophore, while PpiMHCIIb2 is expressed in non-muscle cells of various types. In parallel, our phalloidin staining and TEM observations highlight the structural complexity of ctenophore musculature and emphasize the experimental interest of the ctenophore tentacle root, in which myogenesis is spatially ordered and strikingly similar to striated muscle formation in vertebrates. Conclusion: MHCIIa expression in putative stem cells/proliferating cells probably represents an ancestral trait, while specific involvement of some MHCIIa genes in smooth muscle fibres is a uniquely derived feature of the vertebrates. That one ctenophore MHCIIb paralogue (PpiMHCIIb2) has retained MHCIIa-like expression features furthermore suggests that muscular expression of the other paralogue, PpiMHCIIb1, was the result of neofunctionalisation within the ctenophore lineage, making independent origin of ctenophore muscle cells a likely option.
ISSN: 1471-2148

hal-01544486
https://hal.archives-ouvertes.fr/hal-01544486
DOI : 10.1186/1471-2148-12-107

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The increased expression of the Disintegrin and Metalloprotease ADAM12 has been associated with human cancers, however its role remain unclear. We have previously reported that ADAM12 expression is induced by the transforming growth factor, TGF-β and promotes TGF-β-dependent signaling through interaction with the type II receptor of TGF-β. Here we explore the implication of ADAM12 in TGF-β-mediated epithelial to mesenchymal transition (EMT), a key process in cancer progression. We show that ADAM12 expression is correlated with EMT markers in human breast cancer cell lines and biopsies. Using a non-malignant breast epithelial cell line (MCF10A), we demonstrate that TGF-β-induced EMT increases expression of the membrane-anchored ADAM12L long form. Importantly, ADAM12L overexpression in MCF10A is sufficient to induce loss of cell-cell contact, reorganization of actin cytoskeleton, up-regulation of EMT markers and chemoresistance. These effects are independent of the proteolytic activity but require the cytoplasmic tail and are specific of ADAM12L since overexpression of ADAM12S failed to induce similar changes. We further demonstrate that ADAM12L-dependent EMT is associated with increased phosphorylation of Smad3, Akt and ERK proteins. Conversely, inhibition of TGF-β receptors or ERK activities reverses ADAM12L-induced mesenchymal phenotype. Together our data demonstrate that ADAM12L is associated with EMT and contributes to TGF-β-dependent EMT by favoring both Smad-dependent and Smad-independent pathways
ISSN: 1932-6203

hal-01207281
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01207281
DOI : 10.1371/journal.pone.0139179
PUBMED : 26407179

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study aimed to compare the relative survival of patients with invasive breast cancer between women from French Guiana (a French territory in South America) and metropolitan France. No study hadever compared survival of breast cancer on the basis of immigrant status in France. Our study underlined that access to care for migrants is challenging whichwgenerates health inequalities. Background The prognosis of breast cancer in French Guiana is worse than in France with 23 deaths per 100 incident cases against 17 per 100 in metropolitan France. This study aimed to compare relative survival of patients with invasive breast cancer (IBC) between women from French Guiana and metropolitan France and to determine risk factors influencing breast cancer survival in French Guiana.Materials and methods Data were collected from the Cancer registry of French Guiana. We comparedthe relative survival of women with IBC between French Guiana and metropolitan France. We used Cox's proportional hazard regression to evaluate the effect of prognostic factors on cancer-specific mortality in French Guiana. Results We included all 269 cases of IBC in women diagnosed in French Guiana between 2003 and 2009. The overall 5-year relative survival rate of patients with IBC was 79% in French Guiana and 86% in metropolitan France. The place of birth (foreign country versus French territory), the tumor stage at the time of diagnosis, the mode of diagnosis (symptoms versus screening), the presence of hormone receptors in the tumor and the histologic type were the variables associated with survival differences. None of the other study variables were significantly associated with prognosis. Conclusion Access to care for migrants is challenging,which leads to health inequalities. Early detection through prevention programs is crucial to increaseIBC survival notably for foreign-born patients.
ISSN: 1526-8209

hal-01288657
https://hal.archives-ouvertes.fr/hal-01288657
https://hal.archives-ouvertes.fr/hal-01288657/document
https://hal.archives-ouvertes.fr/hal-01288657/file/2016%2C%20Roue%20-%20Predictive%20factors%20of%20the%20survival%20of%20women%20with%20invasive%20breast%20cancer%20in%20French%20Guiana.pdf

Éditeur(s) : Elsevier Sci Ltd
Résumé : Many questions remain unanswered regarding RNAi-based mechanisms and dsRNA-induced antiviral immune responses in penaeid shrimp. In this study, we report the characterization in the white leg shrimp Litopenaeus vannamei of RNAi pathway associated proteins Lv-Ago 1 and Lv-Ago 2, two members of the Argonaute family of proteins, as well as Lv-sid 1, the first shrimp homologue of Sid-1, a membrane channel-forming protein implicated in the cellular import of dsRNA. To decipher their functional implication in RNAi-related phenomena, we monitored their relative expression following stimulation by specific and non-specific RNA duplexes of diverse length. The findings show that the length of small RNA duplexes plays a critical role in the activation of both RNAi-related and innate antiviral responses. They also suggest that these two mechanisms of antiviral response may activate the same pathway, requiring Lv-Sid 1 and Lv-Ago 2 induction. (C) 2010 Elsevier Ltd. All rights reserved.
Developmental And Comparative Immunology (0145-305X) (Elsevier Sci Ltd), 2010-11 , Vol. 34 , N. 11 , P. 1209-1218

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00015/12652/9587.pdf
DOI:10.1016/j.dci.2010.06.017
http://archimer.ifremer.fr/doc/00015/12652/

Éditeur(s) : Colloque IMBC - International Marine Biotechnology Conference
Résumé : Since 1997, a new pathology seasonally occurs in new caledonian shrimp farms during the warm season. Diseased Litopenaeus stylirostris shrimp suffer from a systemic vibriosis which was attributed to highly pathogenic Vibrio nigripulchritudo. At the present time, only two farms among 17 are affected by the so called "summer syndrome". In such a context it appears urgent to develop reliable diagnostic tools to detect V. nigripulchritudo strains and to differentiate highly virulent strains from non virulent ones in order to understand the mechanisms of infection and overcome disease spreading. Multilocus Sequencing Typing (MLST) analysis on 24 bacterial strains isolated in geographically distinct shrimp farms highlighted the existence of a cluster A containing only strains displaying moderate to high virulence. Since experimental infection procedure for virulence status determination is material intensive and time consuming, and MLST method not accurate enough to inform on the virulence status of strains, it appeared of great interest to develop other diagnostic tools. Two phylogenetically closed strains, one highly virulent SFn1 and the other non-virulent SFn118 were selected in order to characterize genes specific of the virulent strain by Substractive Suppression Hybridization (SSH). Firstly, a total of 622 DNA fragments specific of SFn1 were sequenced, characterized and further used as probes in a DNA macroarray. Testing 24 strains, hybridization profiles were found to be strongly correlated with both MLST genotypes and bacterial virulence status. A total of 96 representative probes were secondly selected to validate macroarray results on 34 more additionnal strains, allowing identification of genetic markers of virulence. Most of DNA fragments specific of highly virulent strains associated to summer syndrome were found to be bore by a plasmid successfully isolated in the laboratory. In next future, these results would permit the development of relevant diagnostic tools useful for accurate epidemiological survey of the summer syndrome.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/acte-3398.pdf
http://archimer.ifremer.fr/doc/00000/3398/

Éditeur(s) : HAL CCSD
Résumé : International audience
INTRODUCTION: The syndrome of combined pulmonary fibrosis and emphysema (CPFE) is characterized by imaging features consisting of the association of centrilobular and/or paraseptal emphysema and pulmonary fibrosis. Virtually all patients are smokers and thus at high risk of developing lung cancer. METHODS: This retrospective multicentre study was conducted by the Groupe d'Etudes et de Recherche sur les Maladies "Orphelines" Pulmonaires (GERM"O"P). RESULTS: A total of 47 patients presenting with lung cancer and CPFE syndrome were identified. All patients were smokers, with a mean of 47 pack-years. A pathological diagnosis of lung cancer was obtained for 38 (81%) patients. Histological type was squamous cell carcinoma in 17 (36%) patients, adenocarcinoma in 14 (30%), non-small-cell lung cancer not otherwise specified in three (6%), small-cell lung cancer in three (6%), and sarcomatoid carcinoma in one (2%). Overall, 20 of the 47 patients could not receive standard-of-care treatment for lung cancer, as per international recommendations or guidelines; this limitation was considered to be directly related to the CPFE syndrome in eight (40%) cases. CONCLUSION: Lung cancer in patients with CPFE syndrome represents a specific entity with a poor prognosis, that further represents the most characteristic and severe model of tobacco-related disease.
Journal of Thoracic Oncology: Official Publication of the International Association for the Study of Lung Cancer

hal-01063912
https://hal.archives-ouvertes.fr/hal-01063912
DOI : 10.1097/JTO.0000000000000209
PUBMED : 25157769

Éditeur(s) : Université de Bucarest - Université de Bretagne occidentale
Résumé : This study is focusing on the architecture and recent sedimentary evolution of the Danube channel, the youngest channel-levee system in the Danube deep-sea fan. The study was conducted as part of the BlaSON French-Romanian Project, and combined high-resolution seismic-reflection profiles and chirp profiles with multibeam bathymetry and piston cores. This data set was acquired in 1998 during a joint survey IFREMER-GeoEcoMar of the north-western Black Sea. Previous seismic and acoustic data were also used. The Danube deep-sea fan is a large passive-margin mud-rich fan. Like the other systems of this type (Amazon fan, Mississippi fan or Indus fan) the Danube fan consists of stacked channel-levee systems intercalated with mass-transport deposits. Seismic and sedimentary facies in the Danube fan are similar to those identified in most of the mud-rich systems. Nevertheless, the Danube fan is distinguished by a specific feature: its development in a freshwater environment. This is due to the peculiar water-level history of the Black Sea controlled by the link to the Mediterranean through the Strait of Bosphorus and the Sea of Marmara. This connexion was successively interrupted (during sea level lowstands) and re-established (when the sea level was rising above the Bosphorus). Temporary absence of marine water influx during lowstands together with large freshwater inputs from the Danube and other major rivers changed the Black Sea into a freshwater lake during times of fan activity. This peculiarity possibly favourised the development of hyperpycnal flow at the Danube mouth and the initiation of turbidity currents in the deep-sea fan. The Danube channel is directly connected to the large shelf-indenting Danube canyon (also known as Viteaz canyon). The Danube canyon is deeply incised into the shelf margin for 26 km landward of the shelfbreak. During lowstands this canyon acted as the most important path for sediment supply to the deep sea in this part of the continental margin. It consists of a main trough with steep flanks, and a meandering thalweg cut into the flat canyon floor, attesting for the development of the canyon by erosion in the entrenched axial thalweg. Sections with specific morphology, orientation and gradient identified along the canyon, are interpreted as phases of landward expansion of the canyon. Internal structure of the canyon shows several erosional surfaces, which indicate that the present morphology of the canyon is the result of its polyphasic evolution. Instability in the zone of the canyon is related to the important sediment supply at the Danube mouth, to the presence of the gas in the surficial sediment, and possibly under a structural control. The upper part of the Danube channel (between the Danube canyon and ~1400 m depth) consists in a single leveed-channel that has undergone significant overbank deposition, as attested by the well-developed levees. The levees are strongly asymmetrical, being higher and wider on the right-hand side looking downstream. This type of asymmetry is rather common in deep-sea fans, and is generally attributed to the Coriolis effect (Menard, 1955). The channel is slightly sinuous, partially filled and incised by an entrenched thalweg, connected to the axial thalweg of the Danube canyon. Detailed seismic investigation inside the channel trough documented several depositional phases within the channel fill, separated by erosional surfaces. These surfaces are associated with distinct terraces identified on the multibeam bathymetry, that can be followed downward along the main trough axis. The valley fill deposits (where not removed by the subsequent erosional event) show an axial HAR (High Amplitude Reflections) seismic facies with lateral lower amplitude continuous reflections consisting in a levee facies, as proved by sampling. This indicates that filling up was associated with flow within the channel, and not with interruption of fan activity. On the middle slope below 1400 m, this single channel bifurcates through repeated avulsions. As a result, several highly meandering channels developed. The onlap relationships between these channels indicate that only one channel was active at a time. Each phase of avulsion resulted in a depositional unit consisting in a basal unchannelized lobe defined as High Amplitude Reflection Packets (HARP, Flood et al., 1991) that underlies a channel-levee system. The deposition of HARPs was associated with the readjustment of the longitudinal profile of the channel after the breaching of a levee, which resulted in remobilization of upslope channel deposits and eroded levees. When this adjustment was complete, erosion ceased and levees began to develop above the HARPs (Pirmez et al., 1997). All the identified phases of avulsion followed the same pattern: (1) breaching of the lower and narrower left levee; (2) building of a unit of High Amplitude Reflector Packets (HARP) basinward of the bifurcation point by the unchannelized flow, while the former channel was abandoned; and (3) initiation of a new meandering leveed channel. The northward migration of the resulting units through repeated bifurcations is influenced by the asymmetry between levees (hence by the Coriolis effect), and confined between the high levees of the initial phase of the Danube channel (to the south) and the steep relief of the Dniepr fan (to the north). Structure of the fan valley fill indicate that the erosional surfaces inside the upper channel could be formed in response of successive avulsions, by the adjustment of the longitudinal profile of the channel following the breaching of a levee wall. Sediments removed by erosion formed the HARP lobes basinward of the avulsion point. When this adjustment was complete, a channel-levee system developed downward of the bifurcation, overlying the HARPs, but also upward of this point, as a confined channel-levee system inside the erosional trough of the fan valley. Fluvial incisions identified on the continental shelf, together with the coastline location during the last active period of the Danube channel, indicated that the paleo-Danube was directed towards the head of the Danube canyon. Paleo-Danube mouth was fairly close (ca. 10 km) to the Danube canyon, supplying sediment to the Danube channel. Furthermore, hyperpycnal flow probably prevailed in the freshwater environment that characterized the Black Sea during times of fan activity. These conditions would have enabled the development of a quasi-continuous river-canyon-deep-sea fan system, ensuring the effective transfer of the sediment between the coastal zone and the deep sea.
Ce travail est consacré à l'étude de l'architecture et de l'évolution sédimentaire récente de l'éventail profond du Danube, en particulier de son dernier système chenal-levée: le chenal du Danube. L'étude a été réalisée dans le cadre du projet de coopération franco-roumaine BlaSON, à partir des données sismiques, bathymétriques-acoustiques et sédimentologiques acquises en 1998 lors d'une campagne en mer Noire réalisée par IFREMER et GeoEcoMar. Des données sismiques et acoustiques antérieures ont été également utilisées. L'éventail profond du Danube s'enserre dans la catégorie des grands éventails vaseux. Comme les autres systèmes de ce genre (tel que les éventails de l'Amazone, du Mississippi ou de l'Indus) il est constitué d'une succession de systèmes chenaux-levées intercalés avec des dépôts de transport en masse. Le fonctionnement de l'éventail était conditionné par la baisse du niveau marin lors des périodes glaciaires. Ses faciès sismiques et sédimentaires s'apparentent aux faciès qui caractérisent la plupart des éventails de ce type. L'éventail du Danube constitue néanmoins un cas particulier parmi les autres systèmes étudiés, du fait de son fonctionnement dans un bassin lacustre. Ceci est dû à la situation spécifique de la mer Noire dont la connexion avec la Méditerranée, par le détroit de Bosphore et la mer de Marmara, a été successivement interrompue (au cours de périodes de bas niveau) et reprise (quand le niveau marin remontait en dépassant le seuil du Bosphore). L'absence de l'apport d'eau salée pendant les périodes glaciaires, associée avec l'augmentation de l'apport fluvial, ont déterminé l'installation d'un milieu d'eau douce dans la mer Noire à chaque fois que la baisse du niveau permettait la reprise du fonctionnement de l'éventail profond. Cette situation particulière aurait favorisé la formation des courants hyperpycnaux à l'embouchure d'un fleuve du débit du Danube qui déversait ses eaux turbides dans un bassin lacustre, et aurait donc influencé l'apparition de courants de turbidité dans l'éventail profond. Le chenal du Danube s'est développé sur la pente continentale en prolongation du canyon du Danube (ou Viteaz) auquel il est directement connecté. Le canyon est incisé de manière significative (26 km) dans la plate-forme continentale. Au cours de bas-niveaux marins il constituait la principale voie de transfert des sédiments terrigènes vers le bassin profond dans cette partie de la marge. Le canyon est constitué par une entaille avec des flancs abrupts et un talweg axial incisé, qui montre l'importance du processus d'érosion du fond pour le développement du canyon. Les segments qui ont été identifiés le long du canyon, avec des morphologies, des orientations et des pentes spécifiques, sont interprétés comme des phases d'avancement du canyon vers la côte. Plusieurs incisions sont visibles dans la structure interne du canyon et témoignent que la morphologie actuelle du canyon est le résultat de son évolution polyphasée. L'instabilité de la zone du canyon est en relation avec les apports sédimentaires importants à l'embouchure du Danube, avec la présence du gaz dans les sédiments superficiels, et possiblement sous un contrôle structural. Sur la pente supérieure (entre le canyon du Danube et environ 1400 m de profondeur) le chenal du Danube présente des levées bien développées et fortement asymétriques, avec la levée droite plus haute et plus large que la levée gauche. Ce type d'asymétrie, fréquemment décrit dans les éventails profonds est généralement attribué à l'effet Coriolis (Menard, 1955). Le chenal est légèrement sinueux, partiellement comblé et incisé par un talweg axial qui représente la continuation sur la pente du talweg incisé dans le canyon du Danube. L'analyse sismique détaillée du remplissage de la vallée montre plusieurs phases de dépôt, séparées par des discontinuités érosives. Ces surfaces d'érosion correspondent à des terrasses emboîtées, relativement parallèles le long de la vallée, visibles dans la bathymétrie. Les dépôts qui constituent le remplissage du chenal présentent un faciès sismique de type HAR (High Amplitude Reflections) dans l'axe du chenal, partiellement (ou parfois totalement) enlevé par les phases d'érosion subséquentes, qui continue latéralement avec des réflexions litées correspondant à un faciès sédimentaire de levée. Le remplissage de la vallée a été donc associé avec des écoulements dans le chenal, et non pas avec l'interruption de son fonctionnement. Sur la pente inférieure, le chenal unique bifurque plusieurs fois par avulsion et forme de nouveaux systèmes chenaux-levées méandriformes. Ces systèmes se succèdent verticalement en onlap, ce qui montre qu'un seul chenal a été actif à la fois. Chaque phase d'avulsion a eu comme résultat la mise en place d'une unité constituée par un lobe défini comme "High Amplitude Reflection Packets" (HARP, Flood et al., 1991) à la base, et un système chenal-levée au sommet. Le dépôt d'un lobe HARP est associé avec de l'érosion dans le chenal en amont du point d'avulsion pour l'ajustement de son profil après la rupture de la levée. Quand le chenal a retrouvé son profil d'équilibre, l'érosion a cessé et des levées ont commencé à se développer au-dessus des HARPs (Pirmez et al., 1997). Toutes les phases d'avulsion se sont développées d'après le même modèle: (1) la rupture de la levée gauche, plus étroite; (2) le dépôt d'un lobe HARP par les écoulements non-chenalisés en aval du point d'avulsion, et l'abandon de l'ancien chenal; (3) l'initiation d'un nouveau système chenal-levée. La migration systématique du chenal vers le nord est influencée par l'assymétrie des levées (donc par la force de Coriolis), et confinée entre les grandes levées de la phase initiale du chenal du Danube, au sud, et le relief abrupt de l'éventail du Dniepr au nord. La structure sédimentaire du chenal du Danube indique que les surfaces érosives à l'intérieur du remplissage du chenal se seraient formées en réponse aux avulsions, du fait de l'ajustement du profil du chenal après la rupture d'une levée. Les sédiments du chenal érodés au cours de ce processus ont formé les lobes HARP. Quand le chenal a retrouvé son profil d'équilibre, un système chenal-levée s'est développé en aval du point d'avulsion au dessus du lobe HARP, mais aussi en amont de ce point, où il se trouve confiné dans la vallée érosive. Les incisions fluviatiles identifiés sur la plate-forme continentale et la position de la ligne de côte pendant la dernière période d'activité du chenal du Danube montrent que le paléo-Danube se dirigeait directement vers la tête du canyon du Danube. Son embouchure était située à proximité du canyon, qui alimentait le chenal du Danube. Cependant, les courants hyperpycnaux devaient prévaloir dans le milieu de salinité réduite qui caractérisait la mer Noire lors des périodes actives de l'éventail. Ces conditions auraient favorisé la mise en place d'un système quasi-continu fleuve-canyon-éventail profond, qui contrôlait le transfert des sédiments entre la côte et le bassin profond.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2002/these-1206.pdf
http://archimer.ifremer.fr/doc/00000/1206/

Éditeur(s) : HAL CCSD
Résumé : International audience
Symbiosis is a widespread phenomenon in the biosphere. In marine benthic environments breakdown of symbiosis is responsible for coral bleaching and dramatically affects coral reef ecosystems functioning [1]. In the water column, planktonic organisms are key component of pelagic ecosystems and a number of species form mutualistic association with microalgae forming a photosymbiosis [2]. Here we intended to investigate the genetic basis of photosymbiosis, through a transcriptomic approach on marine plankton organisms. We focused more specifically on associations occurring between radiolarian host (protist, zooplankton) and dinoflagellates symbiont (protist, phytoplankton) living inside the host cell. It has recently been highlighted that these holobionts are widespread in oligotrophic open oceans and there are also evidences of their fundamental implication in biogeochemical carbon, silica and strontium cycles [3, 4, 5, 6]. RNA-seq technologies allow obtaining an unprecedented amount of data for unicellular organisms isolated from the environment [7]. The study of such non-model holobionts datasets requires de novo assembly, which implies considerable computational resources and the potential production of chimeric sequences [8, 9].We therefore developed an original strategy aiming at accelerating and improving de novo assembly for holobiont datasets. We chose SIMKA [10] a fast kmer-based method initially developed to estimate the similarity between numerous metagenomic datasets, and which has been recently adapted to extract their common sequences. As our symbionts are identified, we used SIMKA to compare our holobionts transcriptomes to publicly available dinoflagellates transcriptomes [11] generating two datasets, one composed of reads from the symbionts and another with reads from the host (for which no reference data are currently available). Independent assemblies were then performed in parallel, accelerating the study process, and minimizing the proportion of resulting chimeric sequences. Our strategy produced a unique and comprehensive genomic dataset for Radiolaria [12, 13], and offers a pragmatic, large scale, comparison strategy to assemble and study holobionts [9]. Our new sequences obtained from holobionts study will be used for phylogenomics investigation, as reference for environmental metagenomic studies and ultimately to understand and characterize the molecular basis of symbiotic relationships in the plankton.Bibliografic references :[1] Simon K. Davy, Denis Allemand, and Virginia M. Weis. “Cell Biology of Cnidarian-Dinoflagellate Symbiosis”. In: Microbiology and Molecular Biology Reviews 76.2 (June 1, 2012), pp. 229–261. issn: 1092-2172, 1098- 5557. doi: 10.1128/MMBR.05014-11.[2] Janouškovec, J. et al. “Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics”. in: PNAS 201614842 (2016). doi:10.1073/pnas.1614842114[3] Tristan Biard et al. “In situ imaging reveals the biomass of giant protists in the global ocean”. In: Nature advance online publication (Apr. 20, 2016). issn: 0028-0836. doi: 10.1038/nature17652.[4] Lionel Guidi et al. “Plankton networks driving carbon export in the olig- otrophic ocean”. In: Nature 532.7600 (Apr. 28, 2016), pp. 465–470. issn: 0028-0836. doi: 10.1038/nature16942.[5] Diane K. Stoecker et al. “Acquired phototrophy in aquatic protists”. In: Aquatic Microbial Ecology 57.3 (Nov. 24, 2009), pp. 279–310. doi: 10.3354/ame01340.[6] Johan Decelle et al. “An original mode of symbiosis in open ocean plankton”. In: Proceedings of the National Academy of Sciences 109.44 (Oct. 30, 2012), pp. 18000–18005. issn: 0027-8424, 1091-6490. doi: 10. 1073/pnas.1212303109.[7] Sergio Balzano et al. “Transcriptome analyses to investigate symbiotic relationships between marine protists”. In: Frontiers in Microbiology 6 (Mar. 17, 2015). issn: 1664-302X. doi: 10.3389/fmicb.2015.00098.[8] Li, B. et al. “Evaluation of de novo transcriptome assemblies from RNA-Seq data”. In: Genome Biology 15, 553 (2014).[9] Sangwan, N., Xia, F. & Gilbert, J. A. “Recovering complete and draft population genomes from metagenome datasets”. In: Microbiome 4, 8 (2016).[10] Gaëtan Benoit et al. “Multiple comparative metagenomics using mul- tiset k -mer counting”. In: PeerJ Computer Science 2 (Nov. 14, 2016). doi: 10.7717/peerj-cs.94.[11] Patrick J. Keeling et al. “The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing”. In: PLOS Biol 12.6 (June 2014), e1001889. issn: 1545-7885. doi: 10.1371/journal.pbio.1001889.[12] Burki, F. et al. “Evolution of Rhizaria: new insights from phylogenomic analysis of uncultured protists”. In BMC Evolutionary Biology 10, 377 (2010).
International Conference on Holobionts
Paris, France

hal-01575069
https://hal.inria.fr/hal-01575069

Éditeur(s) : HAL CCSD BMJ Publishing Group
Résumé : International audience
We read with interest the report by Desrosiers et al 1 on the association between maternal occupational exposure to organic solvents and some birth defects. Their case-control study examined occupational exposure to three classes of solvents (chlorinated, aromatic and Stoddard) and found one association--between neural tube defects (mainly spinal bifida) and maternal occupational exposure to chlorinated solvents, but no association with the other solvent classes or with oral clefts. In their discussion, the authors noted that previous findings on maternal occupational exposure to solvents and oral clefts were from European, mainly French, populations and they hypothesised that the inconsistency between their results and these previous studies might be due to different exposure profiles (eg, intensity and solvent formulation). Although this explanation is plausible, another explanation must be discussed: differences in the definition of exposure. Our research team conducted four of the five studies with positive results cited by Desrosiers et al.2-5 All four were population based and included, in addition to the solvent classes considered by Desrosiers et al, oxygenated solvents, for example, alcohols or glycol ethers. Exposure limited to only oxygenated solvents appears to be very frequent among working women: more than half of the solvent exposure group in Chevrier et al 4 were exposed only to that solvent class. Because previous studies found an increased risk of oral clefts to be associated principally with that specific exposure, failure to consider this association could explain the negative findings for oral clefts. Moreover, women who were exposed only to oxygenated solvents are included in the reference ('non-exposed') group here, which would result in underestimating associations with chlorinated and petroleum solvents. For both these reasons, we believe that the failure to consider oxygenated solvents led to underestimating the risk estimates for oral clefts.
ISSN: 1351-0711

hal-00875943
https://hal.archives-ouvertes.fr/hal-00875943
DOI : 10.1136/oemed-2012-100999
PUBMED : 22843438

Éditeur(s) : HAL CCSD Société Géologique de France
Résumé : The Udachnaya-East pipe in Yakutia in Siberia hosts a unique dry (serpentine-free) body of hypabyssal kimberlite (<0.64wt% H2O), associated with a less dry type of kimberlite and a serpentinized kimberlitic breccia. The dry kimberlite is anomalously rich in salts (Na2O and Cl both up to 6wt%) whereas the slightly less dry and the breccia kimberlite are salt free. Yet the Udachnaya kimberlite is a group-I kimberlite, as is the archetypical kimberlite from Kimberley, South Africa. Samples were studied from the three different types of kimberlite (dry-salty, n=8, non-salty, n=5 and breccia, n=3) regarding their mineralogy, geochemistry, and more specifically their sulfur content. Our results show the salty kimberlite is unprecedentedly rich in sulfur (0.13-0.57wt%) compared to the non-salty kimberlite (0.04-0.12wt%) and the breccia (0.29-0.33wt%). In the salty kimberlite, most of the sulfur is present as sulfates (up to 97% of Stotal) and is disseminated throughout the groundmass in close association with Na-K-bearing carbonates. Sulfates occur within the crystal structure of these Na-K-bearing carbonates as the replacement of (CO3) by (SO3) groups, or as Na- and K-rich sulfates (e.g. aphtitalite, (K,Na)3Na(SO4)2). The associated sulfides are djerfisherite; also Na- and K-rich species. The close association of sulfates and carbonates in these S-rich alkaline rocks suggests that the sulfates crystallized from a mantle-derived magma, a case that has strong implication for the oxygen fugacity of kimberlite magmatism and more generally for the global S budget of the mantle.
ISSN: 0037-9409

hal-01622633
https://hal.archives-ouvertes.fr/hal-01622633
DOI : 10.1051/bsgf/2017007